Wall clock time and date at job start Sat Apr 11 2020 05:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86793 * 120.00030 * 2 1 4 4 H 1.48501 * 109.47338 * 270.00303 * 3 2 1 5 5 H 1.48498 * 109.47310 * 30.00064 * 3 2 1 6 6 H 1.48498 * 109.47252 * 150.00175 * 3 2 1 7 7 C 1.39931 * 119.99784 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00006 * 174.43893 * 7 2 1 9 9 C 1.41441 * 120.00101 * 354.43361 * 7 2 1 10 10 C 1.40782 * 120.17813 * 145.79410 * 9 7 2 11 11 C 1.37710 * 120.04219 * 180.02562 * 10 9 7 12 12 C 1.38380 * 120.41201 * 359.97137 * 11 10 9 13 13 C 1.39881 * 120.35674 * 0.02562 * 12 11 10 14 14 C 1.47879 * 120.02628 * 180.02562 * 13 12 11 15 15 O 1.21547 * 120.00197 * 179.97438 * 14 13 12 16 16 N 1.34777 * 119.99928 * 359.97438 * 14 13 12 17 17 C 1.46505 * 120.00080 * 179.97438 * 16 14 13 18 18 C 1.50693 * 109.47100 * 180.02562 * 17 16 14 19 19 C 1.38291 * 119.92956 * 269.72146 * 18 17 16 20 20 C 1.38107 * 120.06989 * 179.76462 * 19 18 17 21 21 C 1.38869 * 119.93060 * 0.51563 * 20 19 18 22 22 N 1.39948 * 120.06816 * 179.72261 * 21 20 19 23 23 C 1.34780 * 119.99850 * 214.55262 * 22 21 20 24 24 N 1.34778 * 120.00183 * 185.71975 * 23 22 21 25 25 O 1.21589 * 119.99909 * 5.71671 * 23 22 21 26 26 C 1.38867 * 119.86091 * 359.74028 * 21 20 19 27 27 C 1.38115 * 119.92938 * 0.02562 * 26 21 20 28 28 C 1.39033 * 119.94851 * 0.02562 * 13 12 11 29 29 H 0.97008 * 119.99866 * 359.97438 * 1 2 3 30 30 H 1.08003 * 119.97865 * 0.02562 * 10 9 7 31 31 H 1.07993 * 119.79790 * 180.02562 * 11 10 9 32 32 H 1.07995 * 119.81951 * 179.97438 * 12 11 10 33 33 H 0.96998 * 119.99896 * 0.02562 * 16 14 13 34 34 H 1.09001 * 109.46916 * 300.00039 * 17 16 14 35 35 H 1.09000 * 109.46714 * 59.99872 * 17 16 14 36 36 H 1.07999 * 119.95687 * 0.02562 * 19 18 17 37 37 H 1.08004 * 120.03639 * 180.22981 * 20 19 18 38 38 H 0.96994 * 120.00348 * 34.55008 * 22 21 20 39 39 H 0.96993 * 119.99665 * 359.97438 * 24 23 22 40 40 H 0.96992 * 119.99884 * 179.97438 * 24 23 22 41 41 H 1.07994 * 120.03599 * 179.97438 * 26 21 20 42 42 H 1.07997 * 119.96340 * 179.97438 * 27 26 21 43 43 H 1.08000 * 120.20605 * 180.25489 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4398 2.6526 0.7000 6 1 3.5398 1.4401 0.7000 7 6 2.0079 -1.2119 -0.0005 8 1 3.0841 -1.2141 -0.0912 9 6 1.3057 -2.4339 0.1177 10 6 1.7664 -3.5827 -0.5531 11 6 1.0802 -4.7709 -0.4364 12 6 -0.0636 -4.8461 0.3388 13 6 -0.5364 -3.7152 1.0127 14 6 -1.7592 -3.8040 1.8396 15 8 -2.1694 -2.8212 2.4254 16 7 -2.4188 -4.9747 1.9437 17 6 -3.6299 -5.0628 2.7634 18 6 -4.1695 -6.4689 2.7127 19 6 -5.0871 -6.8212 1.7399 20 6 -5.5799 -8.1103 1.6878 21 6 -5.1611 -9.0504 2.6202 22 7 -5.6630 -10.3559 2.5736 23 6 -5.8665 -11.0408 3.7164 24 7 -6.2394 -12.3351 3.6692 25 8 -5.7135 -10.4911 4.7901 26 6 -4.2436 -8.6921 3.5991 27 6 -3.7509 -7.4026 3.6429 28 6 0.1441 -2.5077 0.9045 29 1 -0.4850 0.8401 0.0004 30 1 2.6586 -3.5320 -1.1596 31 1 1.4374 -5.6498 -0.9524 32 1 -0.5944 -5.7828 0.4233 33 1 -2.0912 -5.7591 1.4766 34 1 -3.3904 -4.8029 3.7945 35 1 -4.3797 -4.3714 2.3791 36 1 -5.4155 -6.0884 1.0177 37 1 -6.2937 -8.3858 0.9256 38 1 -5.8645 -10.7679 1.7189 39 1 -6.3617 -12.7735 2.8127 40 1 -6.3855 -12.8281 4.4916 41 1 -3.9163 -9.4208 4.3258 42 1 -3.0376 -7.1233 4.4042 43 1 -0.2150 -1.6330 1.4263 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000056325708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:59 Heat of formation + Delta-G solvation = -48.652375 kcal Electronic energy + Delta-G solvation = -27020.811402 eV Core-core repulsion = 23029.100811 eV Total energy + Delta-G solvation = -3991.710591 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.65463 -40.92679 -39.76484 -38.77474 -36.52690 -35.57085 -35.25296 -34.47218 -32.28718 -31.92540 -31.29601 -30.76900 -27.38507 -26.74099 -24.25154 -23.92800 -22.99085 -22.67868 -21.73490 -21.22118 -19.54833 -19.43211 -19.04614 -18.09815 -17.18684 -17.13902 -16.77451 -16.74681 -16.48845 -16.19806 -15.89795 -15.65230 -15.28907 -15.23727 -15.01029 -14.61359 -14.38895 -14.35361 -14.24049 -13.79163 -13.63936 -13.41306 -12.89006 -12.79708 -12.60835 -12.50838 -12.22077 -12.18661 -11.90180 -11.55999 -11.48140 -11.30941 -11.10546 -10.79445 -10.71529 -10.15389 -9.88711 -9.43337 -9.28974 -9.07940 -8.55587 -6.40088 0.16590 0.37849 0.45332 1.02430 1.38139 1.47102 1.52759 1.76619 1.98303 2.11668 2.23493 2.33805 2.84706 2.93044 3.50334 3.67366 3.69886 3.88815 4.05803 4.07206 4.28333 4.42107 4.44165 4.57726 4.58520 4.71738 4.73346 4.92012 5.08564 5.11597 5.18148 5.22645 5.27756 5.33765 5.42862 5.50370 5.54093 5.64888 5.84108 5.87100 5.91471 5.94960 6.04370 6.07356 6.30564 6.53615 6.69725 6.92862 6.95148 6.96126 7.31904 7.52609 8.41526 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027851 B = 0.001898 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.118800 B =14749.220183 C =15254.774603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.024 3.976 3 Si 0.986 3.014 4 H -0.259 1.259 5 H -0.275 1.275 6 H -0.256 1.256 7 C -0.503 4.503 8 H 0.082 0.918 9 C 0.064 3.936 10 C -0.202 4.202 11 C -0.102 4.102 12 C -0.182 4.182 13 C -0.144 4.144 14 C 0.561 3.439 15 O -0.589 6.589 16 N -0.707 5.707 17 C 0.165 3.835 18 C -0.125 4.125 19 C -0.079 4.079 20 C -0.138 4.138 21 C 0.166 3.834 22 N -0.672 5.672 23 C 0.698 3.302 24 N -0.838 5.838 25 O -0.626 6.626 26 C -0.136 4.136 27 C -0.085 4.085 28 C -0.115 4.115 29 H 0.283 0.717 30 H 0.111 0.889 31 H 0.141 0.859 32 H 0.137 0.863 33 H 0.412 0.588 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.142 0.858 37 H 0.159 0.841 38 H 0.427 0.573 39 H 0.418 0.582 40 H 0.424 0.576 41 H 0.121 0.879 42 H 0.127 0.873 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.269 -24.965 0.192 28.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.188 4.188 3 Si 0.807 3.193 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.179 1.179 7 C -0.534 4.534 8 H 0.100 0.900 9 C 0.062 3.938 10 C -0.222 4.222 11 C -0.120 4.120 12 C -0.202 4.202 13 C -0.147 4.147 14 C 0.350 3.650 15 O -0.471 6.471 16 N -0.360 5.360 17 C 0.043 3.957 18 C -0.126 4.126 19 C -0.098 4.098 20 C -0.158 4.158 21 C 0.070 3.930 22 N -0.322 5.322 23 C 0.396 3.604 24 N -0.408 5.408 25 O -0.506 6.506 26 C -0.156 4.156 27 C -0.105 4.105 28 C -0.135 4.135 29 H 0.093 0.907 30 H 0.129 0.871 31 H 0.159 0.841 32 H 0.155 0.845 33 H 0.250 0.750 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.160 0.840 37 H 0.177 0.823 38 H 0.266 0.734 39 H 0.249 0.751 40 H 0.258 0.742 41 H 0.139 0.861 42 H 0.145 0.855 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.644 -23.663 1.420 27.351 hybrid contribution 0.217 0.239 -0.360 0.483 sum -13.427 -23.424 1.060 27.020 Atomic orbital electron populations 1.69872 1.08948 1.30108 1.38118 1.26808 0.95611 1.04740 0.91654 0.85137 0.78822 0.75843 0.79482 1.18379 1.19970 1.17933 1.19796 0.95234 0.91040 1.47331 0.90012 1.17975 0.92189 0.93899 0.89712 1.21543 1.02991 0.94240 1.03423 1.20965 0.95142 0.97317 0.98588 1.20926 0.99581 0.96584 1.03096 1.19799 0.96452 0.96030 1.02396 1.18732 0.83610 0.82673 0.79941 1.90680 1.69369 1.38079 1.48943 1.45822 1.27507 1.11584 1.51086 1.20124 0.86214 0.93946 0.95458 1.19693 1.00465 0.94276 0.98204 1.21104 0.95214 0.96495 0.97027 1.21079 1.01949 0.91656 1.01165 1.17625 0.93829 0.84473 0.97039 1.42388 1.67481 1.13188 1.09155 1.16214 0.77746 0.82801 0.83637 1.42767 1.74496 1.09155 1.14368 1.91006 1.59892 1.69878 1.29845 1.21077 0.97440 0.97094 0.99997 1.21020 0.98874 0.92438 0.98131 1.21437 0.97540 0.95494 0.99058 0.90686 0.87087 0.84086 0.84494 0.75025 0.91771 0.91191 0.84034 0.82297 0.73354 0.75074 0.74219 0.86060 0.85549 0.88712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -48.23 10.96 21.82 0.24 -47.99 16 2 C 0.02 1.29 5.31 85.25 0.45 1.74 16 3 Si 0.99 40.73 29.56 68.60 2.03 42.76 16 4 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 5 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 6 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 7 C -0.50 -27.85 9.04 23.47 0.21 -27.64 16 8 H 0.08 4.26 7.85 -2.91 -0.02 4.24 16 9 C 0.06 3.52 5.50 -21.32 -0.12 3.40 16 10 C -0.20 -9.40 9.78 22.77 0.22 -9.17 16 11 C -0.10 -3.98 10.01 22.18 0.22 -3.76 16 12 C -0.18 -7.08 9.55 22.70 0.22 -6.87 16 13 C -0.14 -6.81 5.87 -20.14 -0.12 -6.93 16 14 C 0.56 24.89 7.77 86.80 0.67 25.56 16 15 O -0.59 -31.13 16.33 -3.86 -0.06 -31.19 16 16 N -0.71 -22.74 5.50 -469.68 -2.58 -25.33 16 17 C 0.17 4.64 5.80 85.63 0.50 5.14 16 18 C -0.13 -2.79 5.25 -19.84 -0.10 -2.89 16 19 C -0.08 -1.43 9.69 22.25 0.22 -1.22 16 20 C -0.14 -2.00 9.97 22.39 0.22 -1.77 16 21 C 0.17 2.86 6.25 38.15 0.24 3.10 16 22 N -0.67 -7.45 5.35 -317.16 -1.70 -9.15 16 23 C 0.70 10.50 8.56 179.05 1.53 12.03 16 24 N -0.84 -4.01 8.88 -184.74 -1.64 -5.65 16 25 O -0.63 -16.30 14.97 -4.00 -0.06 -16.36 16 26 C -0.14 -2.99 8.65 22.39 0.19 -2.79 16 27 C -0.09 -1.93 9.69 22.25 0.22 -1.71 16 28 C -0.11 -6.44 8.16 23.01 0.19 -6.25 16 29 H 0.28 14.98 8.30 -92.70 -0.77 14.21 16 30 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 31 H 0.14 4.21 8.06 -2.91 -0.02 4.19 16 32 H 0.14 4.02 6.38 -2.91 -0.02 4.00 16 33 H 0.41 11.00 6.48 -92.71 -0.60 10.40 16 34 H 0.06 1.92 8.08 -2.39 -0.02 1.90 16 35 H 0.07 2.03 8.08 -2.39 -0.02 2.01 16 36 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 37 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 38 H 0.43 1.11 8.84 -92.71 -0.82 0.30 16 39 H 0.42 -1.15 8.85 -92.71 -0.82 -1.97 16 40 H 0.42 1.56 8.93 -92.71 -0.83 0.73 16 41 H 0.12 2.98 6.52 -2.91 -0.02 2.96 16 42 H 0.13 2.79 8.06 -2.91 -0.02 2.76 16 43 H 0.09 5.99 6.05 -2.91 -0.02 5.97 16 Total: -1.00 -81.60 372.37 -0.76 -82.36 By element: Atomic # 1 Polarization: 32.52 SS G_CDS: -1.95 Total: 30.57 kcal Atomic # 6 Polarization: -24.99 SS G_CDS: 4.96 Total: -20.03 kcal Atomic # 7 Polarization: -82.43 SS G_CDS: -5.68 Total: -88.11 kcal Atomic # 8 Polarization: -47.43 SS G_CDS: -0.12 Total: -47.55 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.76 kcal Total: -81.60 -0.76 -82.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056325708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.710 kcal (2) G-P(sol) polarization free energy of solvation -81.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds