Wall clock time and date at job start Sat Apr 11 2020 05:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31421 * 1 3 3 Si 1.86798 * 120.00192 * 2 1 4 4 H 1.48507 * 109.47087 * 239.99900 * 3 2 1 5 5 H 1.48503 * 109.47067 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47645 * 119.99201 * 3 2 1 7 7 C 1.38888 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00315 * 185.47274 * 7 2 1 9 9 N 1.37136 * 120.00452 * 5.47249 * 7 2 1 10 10 C 1.34773 * 120.00297 * 233.62631 * 9 7 2 11 11 O 1.21284 * 119.99723 * 186.00112 * 10 9 7 12 12 C 1.50695 * 120.00221 * 5.99428 * 10 9 7 13 13 N 1.46494 * 109.47341 * 174.99568 * 12 10 9 14 14 C 1.34752 * 120.11393 * 270.02642 * 13 12 10 15 15 N 1.30513 * 121.54388 * 180.02562 * 14 13 12 16 16 C 1.33853 * 121.68196 * 359.97438 * 15 14 13 17 17 C 1.36046 * 119.56137 * 359.97438 * 16 15 14 18 18 C 1.35003 * 120.10916 * 90.00332 * 13 12 10 19 19 O 1.21980 * 120.68051 * 359.72677 * 18 13 12 20 20 C 1.51147 * 110.28903 * 179.97438 * 17 16 15 21 21 C 1.54450 * 105.03077 * 343.06117 * 20 17 16 22 22 C 1.51366 * 130.46136 * 180.02562 * 16 15 14 23 23 C 1.39792 * 119.99852 * 53.61812 * 9 7 2 24 24 C 1.38958 * 120.07875 * 188.28543 * 23 9 7 25 25 C 1.38087 * 119.91924 * 179.79574 * 24 23 9 26 26 C 1.38306 * 120.07928 * 0.46249 * 25 24 23 27 27 C 1.38308 * 120.15746 * 359.79040 * 26 25 24 28 28 C 1.38080 * 120.07627 * 359.97438 * 27 26 25 29 29 H 0.97003 * 120.00021 * 5.01279 * 1 2 3 30 30 H 1.09010 * 109.46738 * 55.00045 * 12 10 9 31 31 H 1.09000 * 109.47487 * 295.00304 * 12 10 9 32 32 H 1.08001 * 119.22779 * 359.97438 * 14 13 12 33 33 H 1.08999 * 110.33084 * 224.17225 * 20 17 16 34 34 H 1.08992 * 110.41836 * 101.98775 * 20 17 16 35 35 H 1.09002 * 110.90728 * 267.63682 * 21 20 17 36 36 H 1.08988 * 110.90982 * 144.02534 * 21 20 17 37 37 H 1.08996 * 110.31005 * 315.88340 * 22 16 15 38 38 H 1.09005 * 110.30955 * 78.06685 * 22 16 15 39 39 H 1.07996 * 120.04257 * 0.02562 * 24 23 9 40 40 H 1.08004 * 119.95897 * 180.25700 * 25 24 23 41 41 H 1.08001 * 119.92419 * 179.77088 * 26 25 24 42 42 H 1.07997 * 119.96562 * 179.97438 * 27 26 25 43 43 H 1.08000 * 120.04041 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 3.1021 1.6963 -1.2125 5 1 1.2833 2.7465 -0.0006 6 1 3.1019 1.6965 1.2125 7 6 2.0086 -1.2028 0.0005 8 1 3.0850 -1.2050 0.0897 9 7 1.3277 -2.3878 -0.1122 10 6 1.5136 -3.3614 0.8010 11 8 0.9968 -4.4473 0.6435 12 6 2.3635 -3.1008 2.0179 13 7 2.3125 -4.2638 2.9073 14 6 1.3664 -4.3426 3.8635 15 7 1.2955 -5.3653 4.6712 16 6 2.1575 -6.3861 4.5903 17 6 3.1352 -6.3656 3.6445 18 6 3.2131 -5.2603 2.7714 19 8 4.0732 -5.2085 1.9080 20 6 3.9840 -7.6125 3.7410 21 6 3.6771 -8.1990 5.1364 22 6 2.2585 -7.6539 5.4111 23 6 0.4407 -2.5859 -1.1743 24 6 -0.3766 -3.7095 -1.1988 25 6 -1.2546 -3.8998 -2.2475 26 6 -1.3144 -2.9786 -3.2773 27 6 -0.4987 -1.8618 -3.2589 28 6 0.3782 -1.6626 -2.2110 29 1 -0.4850 0.8369 -0.0734 30 1 1.9855 -2.2242 2.5441 31 1 3.3940 -2.9236 1.7102 32 1 0.6504 -3.5403 3.9644 33 1 5.0409 -7.3583 3.6612 34 1 3.7061 -8.3228 2.9623 35 1 4.3861 -7.8305 5.8778 36 1 3.6762 -9.2886 5.1088 37 1 2.1386 -7.4291 6.4708 38 1 1.5066 -8.3743 5.0887 39 1 -0.3278 -4.4312 -0.3969 40 1 -1.8931 -4.7707 -2.2651 41 1 -1.9994 -3.1317 -4.0981 42 1 -0.5477 -1.1446 -4.0649 43 1 1.0152 -0.7906 -2.1974 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184059056.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:07 Heat of formation + Delta-G solvation = 22.836167 kcal Electronic energy + Delta-G solvation = -29377.907915 eV Core-core repulsion = 25389.297300 eV Total energy + Delta-G solvation = -3988.610615 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.79400 -39.80534 -38.05606 -37.25258 -36.82961 -35.16087 -33.72310 -32.06749 -30.02689 -29.75419 -29.26268 -28.31217 -27.11213 -25.32601 -23.91918 -22.74567 -21.69302 -21.20291 -20.77286 -19.66429 -18.40696 -18.07974 -16.91805 -16.59394 -15.96000 -15.76387 -15.66105 -15.29369 -15.01857 -14.50360 -14.41154 -14.30173 -13.50415 -13.42708 -13.21722 -13.09454 -12.91151 -12.82843 -12.44749 -12.36215 -12.31876 -12.11575 -11.77286 -11.49759 -11.41132 -11.32931 -11.26242 -11.18351 -10.90518 -10.61207 -10.20133 -9.97983 -9.87823 -9.68535 -9.40303 -8.93975 -8.46943 -8.02016 -7.88294 -7.03999 -6.46336 -4.70076 0.80409 2.09945 2.29552 2.47631 2.60168 2.95304 3.04711 3.05155 3.51930 3.72373 3.84295 3.85484 4.32606 4.49736 4.53249 4.61488 4.81768 4.88977 4.96161 5.04399 5.43486 5.45052 5.50495 5.60193 5.66880 5.70150 5.75880 5.80311 5.81176 5.91526 5.95752 6.08170 6.08410 6.14268 6.52050 6.58152 6.63102 6.76662 6.78903 7.01456 7.11153 7.39793 7.51287 7.53774 7.63644 7.93864 7.95479 8.13029 8.27294 8.67715 9.00198 9.40869 10.33005 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013702 B = 0.003692 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.943900 B = 7582.015867 C = 8773.231945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.061 3.939 3 Si 0.917 3.083 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.382 4.382 8 H 0.096 0.904 9 N -0.375 5.375 10 C 0.479 3.521 11 O -0.558 6.558 12 C 0.090 3.910 13 N -0.500 5.500 14 C 0.390 3.610 15 N -0.542 5.542 16 C 0.158 3.842 17 C -0.273 4.273 18 C 0.537 3.463 19 O -0.536 6.536 20 C -0.051 4.051 21 C -0.118 4.118 22 C -0.069 4.069 23 C 0.193 3.807 24 C -0.179 4.179 25 C -0.117 4.117 26 C -0.171 4.171 27 C -0.120 4.120 28 C -0.104 4.104 29 H 0.278 0.722 30 H 0.130 0.870 31 H 0.125 0.875 32 H 0.205 0.795 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.163 0.837 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.106 0.894 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.336 -6.055 8.153 10.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.151 4.151 3 Si 0.742 3.258 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.509 4.509 8 H 0.113 0.887 9 N -0.083 5.083 10 C 0.269 3.731 11 O -0.442 6.442 12 C -0.035 4.035 13 N -0.215 5.215 14 C 0.106 3.894 15 N -0.264 5.264 16 C 0.038 3.962 17 C -0.281 4.281 18 C 0.337 3.663 19 O -0.414 6.414 20 C -0.090 4.090 21 C -0.156 4.156 22 C -0.107 4.107 23 C 0.097 3.903 24 C -0.199 4.199 25 C -0.136 4.136 26 C -0.190 4.190 27 C -0.139 4.139 28 C -0.125 4.125 29 H 0.088 0.912 30 H 0.147 0.853 31 H 0.143 0.857 32 H 0.221 0.779 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.111 0.889 39 H 0.179 0.821 40 H 0.123 0.877 41 H 0.120 0.880 42 H 0.124 0.876 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.005 -6.542 8.251 10.719 hybrid contribution 0.638 1.375 -0.903 1.764 sum 2.643 -5.167 7.348 9.364 Atomic orbital electron populations 1.69945 1.06147 1.29118 1.41444 1.25625 0.95344 1.00154 0.93937 0.86145 0.79399 0.80541 0.79723 1.19266 1.20473 1.19141 1.19381 0.91835 0.81983 1.57676 0.88684 1.40884 1.35676 1.13734 1.18001 1.20706 0.83041 0.84960 0.84420 1.90366 1.51523 1.25300 1.76989 1.21731 1.04591 0.86214 0.90977 1.46417 1.26309 1.20569 1.28199 1.24865 0.87630 0.95376 0.81497 1.67647 1.28524 1.02278 1.27905 1.21690 0.88554 0.92888 0.93024 1.21926 1.04876 0.99779 1.01470 1.16643 0.81904 0.82425 0.85361 1.90911 1.36099 1.78464 1.35880 1.20583 0.99073 0.92305 0.97014 1.22379 0.95582 1.00750 0.96849 1.21029 0.98299 0.91805 0.99585 1.18136 0.91118 0.93564 0.87502 1.22318 0.96752 0.99753 1.01047 1.20842 0.98958 0.98724 0.95092 1.20779 1.02019 0.96580 0.99635 1.20743 0.97431 0.97476 0.98205 1.20757 0.99911 0.99280 0.92522 0.91171 0.85257 0.85676 0.77912 0.90701 0.90459 0.90650 0.89923 0.89545 0.88949 0.82075 0.87659 0.88015 0.87619 0.85807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.10 11.62 55.49 0.64 -19.46 16 2 C 0.06 1.37 3.85 -17.49 -0.07 1.30 16 3 Si 0.92 17.38 29.56 -169.99 -5.02 12.35 16 4 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 5 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 6 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 7 C -0.38 -8.71 7.40 -14.94 -0.11 -8.82 16 8 H 0.10 2.07 7.78 -52.48 -0.41 1.66 16 9 N -0.37 -8.92 2.66 -58.98 -0.16 -9.08 16 10 C 0.48 10.76 7.59 -10.99 -0.08 10.68 16 11 O -0.56 -13.65 12.94 5.55 0.07 -13.58 16 12 C 0.09 1.62 4.68 -5.20 -0.02 1.60 16 13 N -0.50 -8.68 2.07 -122.43 -0.25 -8.93 16 14 C 0.39 5.76 11.47 -90.63 -1.04 4.72 16 15 N -0.54 -8.13 10.39 -10.48 -0.11 -8.24 16 16 C 0.16 2.29 7.32 -82.17 -0.60 1.69 16 17 C -0.27 -4.44 6.13 -104.12 -0.64 -5.08 16 18 C 0.54 10.39 7.42 -15.08 -0.11 10.28 16 19 O -0.54 -12.08 16.76 4.94 0.08 -11.99 16 20 C -0.05 -0.65 6.74 -26.90 -0.18 -0.84 16 21 C -0.12 -1.06 7.12 -25.22 -0.18 -1.24 16 22 C -0.07 -0.71 6.78 -26.81 -0.18 -0.89 16 23 C 0.19 4.70 5.71 -83.69 -0.48 4.23 16 24 C -0.18 -4.21 8.96 -39.37 -0.35 -4.57 16 25 C -0.12 -2.43 10.04 -39.61 -0.40 -2.83 16 26 C -0.17 -3.34 10.04 -39.53 -0.40 -3.74 16 27 C -0.12 -2.45 10.04 -39.61 -0.40 -2.84 16 28 C -0.10 -2.40 7.86 -39.37 -0.31 -2.71 16 29 H 0.28 6.39 8.32 -40.82 -0.34 6.05 16 30 H 0.13 1.98 7.93 -51.92 -0.41 1.57 16 31 H 0.13 2.29 7.40 -51.93 -0.38 1.91 16 32 H 0.20 2.29 8.03 -52.49 -0.42 1.86 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.56 8.14 -51.94 -0.42 0.14 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.16 3.98 4.76 -55.00 -0.26 3.71 16 40 H 0.11 1.89 8.06 -52.48 -0.42 1.47 16 41 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 42 H 0.11 1.86 8.06 -52.49 -0.42 1.43 16 43 H 0.12 2.91 6.03 -52.49 -0.32 2.59 16 LS Contribution 359.73 15.07 5.42 5.42 Total: -1.00 -31.06 359.73 -10.02 -41.08 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -5.14 Total: 11.48 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: -5.55 Total: 0.94 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: 0.13 Total: -45.71 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: 0.15 Total: -25.57 kcal Atomic # 14 Polarization: 17.38 SS G_CDS: -5.02 Total: 12.35 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.06 -10.02 -41.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184059056.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.912 kcal (2) G-P(sol) polarization free energy of solvation -31.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds