Wall clock time and date at job start Sat Apr 11 2020 05:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31421 * 1 3 3 Si 1.86798 * 120.00192 * 2 1 4 4 H 1.48507 * 109.47087 * 239.99900 * 3 2 1 5 5 H 1.48503 * 109.47067 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47645 * 119.99201 * 3 2 1 7 7 C 1.38888 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00315 * 185.47274 * 7 2 1 9 9 N 1.37136 * 120.00452 * 5.47249 * 7 2 1 10 10 C 1.34773 * 120.00297 * 233.62631 * 9 7 2 11 11 O 1.21284 * 119.99723 * 186.00112 * 10 9 7 12 12 C 1.50695 * 120.00221 * 5.99428 * 10 9 7 13 13 N 1.46494 * 109.47341 * 174.99568 * 12 10 9 14 14 C 1.34752 * 120.11393 * 270.02642 * 13 12 10 15 15 N 1.30513 * 121.54388 * 180.02562 * 14 13 12 16 16 C 1.33853 * 121.68196 * 359.97438 * 15 14 13 17 17 C 1.36046 * 119.56137 * 359.97438 * 16 15 14 18 18 C 1.35003 * 120.10916 * 90.00332 * 13 12 10 19 19 O 1.21980 * 120.68051 * 359.72677 * 18 13 12 20 20 C 1.51147 * 110.28903 * 179.97438 * 17 16 15 21 21 C 1.54450 * 105.03077 * 343.06117 * 20 17 16 22 22 C 1.51366 * 130.46136 * 180.02562 * 16 15 14 23 23 C 1.39792 * 119.99852 * 53.61812 * 9 7 2 24 24 C 1.38958 * 120.07875 * 188.28543 * 23 9 7 25 25 C 1.38087 * 119.91924 * 179.79574 * 24 23 9 26 26 C 1.38306 * 120.07928 * 0.46249 * 25 24 23 27 27 C 1.38308 * 120.15746 * 359.79040 * 26 25 24 28 28 C 1.38080 * 120.07627 * 359.97438 * 27 26 25 29 29 H 0.97003 * 120.00021 * 5.01279 * 1 2 3 30 30 H 1.09010 * 109.46738 * 55.00045 * 12 10 9 31 31 H 1.09000 * 109.47487 * 295.00304 * 12 10 9 32 32 H 1.08001 * 119.22779 * 359.97438 * 14 13 12 33 33 H 1.08999 * 110.33084 * 224.17225 * 20 17 16 34 34 H 1.08992 * 110.41836 * 101.98775 * 20 17 16 35 35 H 1.09002 * 110.90728 * 267.63682 * 21 20 17 36 36 H 1.08988 * 110.90982 * 144.02534 * 21 20 17 37 37 H 1.08996 * 110.31005 * 315.88340 * 22 16 15 38 38 H 1.09005 * 110.30955 * 78.06685 * 22 16 15 39 39 H 1.07996 * 120.04257 * 0.02562 * 24 23 9 40 40 H 1.08004 * 119.95897 * 180.25700 * 25 24 23 41 41 H 1.08001 * 119.92419 * 179.77088 * 26 25 24 42 42 H 1.07997 * 119.96562 * 179.97438 * 27 26 25 43 43 H 1.08000 * 120.04041 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 3.1021 1.6963 -1.2125 5 1 1.2833 2.7465 -0.0006 6 1 3.1019 1.6965 1.2125 7 6 2.0086 -1.2028 0.0005 8 1 3.0850 -1.2050 0.0897 9 7 1.3277 -2.3878 -0.1122 10 6 1.5136 -3.3614 0.8010 11 8 0.9968 -4.4473 0.6435 12 6 2.3635 -3.1008 2.0179 13 7 2.3125 -4.2638 2.9073 14 6 1.3664 -4.3426 3.8635 15 7 1.2955 -5.3653 4.6712 16 6 2.1575 -6.3861 4.5903 17 6 3.1352 -6.3656 3.6445 18 6 3.2131 -5.2603 2.7714 19 8 4.0732 -5.2085 1.9080 20 6 3.9840 -7.6125 3.7410 21 6 3.6771 -8.1990 5.1364 22 6 2.2585 -7.6539 5.4111 23 6 0.4407 -2.5859 -1.1743 24 6 -0.3766 -3.7095 -1.1988 25 6 -1.2546 -3.8998 -2.2475 26 6 -1.3144 -2.9786 -3.2773 27 6 -0.4987 -1.8618 -3.2589 28 6 0.3782 -1.6626 -2.2110 29 1 -0.4850 0.8369 -0.0734 30 1 1.9855 -2.2242 2.5441 31 1 3.3940 -2.9236 1.7102 32 1 0.6504 -3.5403 3.9644 33 1 5.0409 -7.3583 3.6612 34 1 3.7061 -8.3228 2.9623 35 1 4.3861 -7.8305 5.8778 36 1 3.6762 -9.2886 5.1088 37 1 2.1386 -7.4291 6.4708 38 1 1.5066 -8.3743 5.0887 39 1 -0.3278 -4.4312 -0.3969 40 1 -1.8931 -4.7707 -2.2651 41 1 -1.9994 -3.1317 -4.0981 42 1 -0.5477 -1.1446 -4.0649 43 1 1.0152 -0.7906 -2.1974 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184059056.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:05 Heat of formation + Delta-G solvation = 7.147727 kcal Electronic energy + Delta-G solvation = -29378.588217 eV Core-core repulsion = 25389.297300 eV Total energy + Delta-G solvation = -3989.290917 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.11347 -41.48404 -39.38508 -38.83126 -38.13828 -36.90278 -34.99863 -33.83162 -31.53033 -31.36789 -30.60410 -29.43153 -28.49153 -27.07840 -25.09832 -24.15745 -23.29911 -22.79455 -21.71986 -21.35339 -19.75633 -19.66659 -18.48944 -17.95708 -17.43565 -17.26425 -17.08269 -16.85518 -16.32868 -16.12243 -15.81217 -15.70815 -15.09547 -14.81570 -14.56427 -14.49910 -14.29196 -14.08099 -14.04977 -13.91931 -13.45123 -13.41237 -13.15584 -13.07763 -13.00656 -12.78978 -12.53034 -12.21479 -12.15246 -12.09626 -11.79708 -11.35445 -11.18259 -11.12218 -10.93823 -10.65475 -10.16548 -9.58233 -9.32649 -8.78306 -8.19794 -6.49503 -0.41069 0.60398 0.75901 0.76501 1.24541 1.43895 1.48805 1.56806 1.83965 2.21544 2.42683 2.75826 2.78445 2.90366 3.30100 3.37797 3.54705 3.67557 3.84556 3.93032 4.11402 4.16036 4.26042 4.27818 4.33090 4.51726 4.54635 4.60535 4.75108 4.79644 4.86046 4.92706 4.93086 5.06910 5.07628 5.13387 5.30642 5.31075 5.34124 5.36741 5.48618 5.73156 5.79921 5.83350 5.95550 6.20742 6.52785 6.68233 6.74906 6.92710 7.25024 7.66596 8.60883 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013702 B = 0.003692 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.943900 B = 7582.015867 C = 8773.231945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.035 3.965 3 Si 0.979 3.021 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.255 1.255 7 C -0.394 4.394 8 H 0.099 0.901 9 N -0.386 5.386 10 C 0.466 3.534 11 O -0.586 6.586 12 C 0.103 3.897 13 N -0.501 5.501 14 C 0.386 3.614 15 N -0.542 5.542 16 C 0.164 3.836 17 C -0.306 4.306 18 C 0.517 3.483 19 O -0.587 6.587 20 C -0.055 4.055 21 C -0.102 4.102 22 C -0.067 4.067 23 C 0.163 3.837 24 C -0.206 4.206 25 C -0.119 4.119 26 C -0.163 4.163 27 C -0.119 4.119 28 C -0.123 4.123 29 H 0.278 0.722 30 H 0.158 0.842 31 H 0.118 0.882 32 H 0.237 0.763 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.145 0.855 40 H 0.132 0.868 41 H 0.143 0.857 42 H 0.137 0.863 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.497 -6.211 9.099 11.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.174 4.174 3 Si 0.802 3.198 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.179 1.179 7 C -0.520 4.520 8 H 0.116 0.884 9 N -0.094 5.094 10 C 0.258 3.742 11 O -0.472 6.472 12 C -0.023 4.023 13 N -0.215 5.215 14 C 0.103 3.897 15 N -0.263 5.263 16 C 0.043 3.957 17 C -0.313 4.313 18 C 0.319 3.681 19 O -0.470 6.470 20 C -0.094 4.094 21 C -0.139 4.139 22 C -0.104 4.104 23 C 0.067 3.933 24 C -0.226 4.226 25 C -0.137 4.137 26 C -0.182 4.182 27 C -0.138 4.138 28 C -0.144 4.144 29 H 0.087 0.913 30 H 0.175 0.825 31 H 0.136 0.864 32 H 0.252 0.748 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.162 0.838 40 H 0.150 0.850 41 H 0.161 0.839 42 H 0.155 0.845 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.149 -6.701 9.231 11.465 hybrid contribution 0.798 1.379 -1.246 2.023 sum 1.946 -5.322 7.985 9.792 Atomic orbital electron populations 1.70053 1.07574 1.29718 1.42371 1.26267 0.95750 1.02543 0.92873 0.85200 0.78135 0.76582 0.79914 1.19451 1.20616 1.17866 1.19624 0.92087 0.82218 1.58046 0.88386 1.41131 1.35743 1.14238 1.18322 1.21367 0.83159 0.84413 0.85286 1.90340 1.52824 1.26215 1.77821 1.21615 1.03318 0.87430 0.89886 1.46438 1.26624 1.20061 1.28395 1.25624 0.87242 0.96300 0.80537 1.67772 1.28432 1.02450 1.27654 1.22492 0.86981 0.93694 0.92522 1.22270 1.06960 1.00264 1.01796 1.17308 0.81734 0.83495 0.85520 1.90857 1.38281 1.79681 1.38173 1.20722 0.98085 0.90970 0.99594 1.22403 0.94940 1.02326 0.94245 1.21250 0.99422 0.89648 1.00098 1.18504 0.91991 0.94423 0.88389 1.22326 0.98396 0.99746 1.02099 1.21201 0.98271 0.99891 0.94388 1.21206 1.01688 0.95307 1.00002 1.21154 0.96275 0.98343 0.97991 1.20817 1.01087 0.98977 0.93505 0.91255 0.82496 0.86384 0.74757 0.91492 0.90952 0.89293 0.86924 0.87189 0.87403 0.83843 0.84965 0.83907 0.84521 0.86999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -42.06 11.62 21.65 0.25 -41.81 16 2 C 0.03 1.55 3.85 84.91 0.33 1.88 16 3 Si 0.98 35.41 29.56 68.60 2.03 37.43 16 4 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16 5 H -0.28 -10.16 7.11 99.48 0.71 -9.45 16 6 H -0.25 -8.67 7.11 99.48 0.71 -7.96 16 7 C -0.39 -18.38 7.40 84.02 0.62 -17.76 16 8 H 0.10 4.39 7.78 -2.91 -0.02 4.37 16 9 N -0.39 -19.09 2.66 -458.90 -1.22 -20.31 16 10 C 0.47 21.96 7.59 87.66 0.67 22.63 16 11 O -0.59 -30.24 12.94 -3.04 -0.04 -30.28 16 12 C 0.10 3.85 4.68 85.63 0.40 4.25 16 13 N -0.50 -17.95 2.07 -659.22 -1.37 -19.32 16 14 C 0.39 11.29 11.47 180.35 2.07 13.36 16 15 N -0.54 -15.68 10.39 -187.07 -1.94 -17.63 16 16 C 0.16 4.56 7.32 41.95 0.31 4.87 16 17 C -0.31 -10.11 6.13 -19.54 -0.12 -10.23 16 18 C 0.52 20.98 7.42 84.90 0.63 21.61 16 19 O -0.59 -28.32 16.76 -5.25 -0.09 -28.41 16 20 C -0.06 -1.40 6.74 30.48 0.21 -1.19 16 21 C -0.10 -1.53 7.12 31.57 0.22 -1.31 16 22 C -0.07 -1.16 6.78 30.55 0.21 -0.95 16 23 C 0.16 8.19 5.71 38.22 0.22 8.41 16 24 C -0.21 -9.96 8.96 22.41 0.20 -9.76 16 25 C -0.12 -4.82 10.04 22.25 0.22 -4.60 16 26 C -0.16 -5.99 10.04 22.30 0.22 -5.76 16 27 C -0.12 -4.69 10.04 22.25 0.22 -4.47 16 28 C -0.12 -5.75 7.86 22.41 0.18 -5.58 16 29 H 0.28 12.84 8.32 -92.71 -0.77 12.07 16 30 H 0.16 4.86 7.93 -2.38 -0.02 4.84 16 31 H 0.12 4.59 7.40 -2.39 -0.02 4.58 16 32 H 0.24 5.04 8.03 -2.91 -0.02 5.02 16 33 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.11 1.63 8.14 -2.38 -0.02 1.61 16 39 H 0.14 7.44 4.76 -42.73 -0.20 7.24 16 40 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 41 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 42 H 0.14 4.44 8.06 -2.91 -0.02 4.41 16 43 H 0.11 5.38 6.03 -2.91 -0.02 5.36 16 Total: -1.00 -71.50 359.73 5.29 -66.21 By element: Atomic # 1 Polarization: 37.86 SS G_CDS: 0.86 Total: 38.72 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: 6.81 Total: 15.40 kcal Atomic # 7 Polarization: -94.79 SS G_CDS: -4.28 Total: -99.07 kcal Atomic # 8 Polarization: -58.56 SS G_CDS: -0.13 Total: -58.69 kcal Atomic # 14 Polarization: 35.41 SS G_CDS: 2.03 Total: 37.43 kcal Total: -71.50 5.29 -66.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184059056.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.356 kcal (2) G-P(sol) polarization free energy of solvation -71.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds