Wall clock time and date at job start Sat Apr 11 2020 05:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00374 * 2 1 4 4 H 1.48505 * 109.46958 * 239.99392 * 3 2 1 5 5 H 1.48494 * 109.47270 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46979 * 119.99699 * 3 2 1 7 7 C 1.37880 * 119.99670 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99961 * 180.02562 * 7 2 1 9 9 C 1.50710 * 119.99979 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47157 * 179.97438 * 9 7 2 11 11 C 1.46500 * 119.99775 * 270.00429 * 10 9 7 12 12 C 1.50709 * 109.46804 * 269.99665 * 11 10 9 13 13 C 1.38669 * 120.41689 * 269.72686 * 12 11 10 14 14 C 1.38625 * 118.41842 * 179.78690 * 13 12 11 15 15 C 1.38233 * 119.16097 * 0.50330 * 14 13 12 16 16 N 1.31855 * 120.76070 * 359.73284 * 15 14 13 17 17 C 1.31881 * 121.72854 * 0.02562 * 16 15 14 18 18 C 1.34770 * 119.99744 * 90.00028 * 10 9 7 19 19 O 1.21699 * 119.99856 * 180.02562 * 18 10 9 20 20 C 1.46427 * 120.00489 * 0.27537 * 18 10 9 21 21 C 1.34798 * 120.00103 * 172.93607 * 20 18 10 22 22 C 1.47220 * 120.00221 * 349.08296 * 21 20 18 23 23 C 1.39849 * 120.55816 * 136.52771 * 22 21 20 24 24 N 1.31617 * 120.64811 * 180.02562 * 23 22 21 25 25 C 1.31928 * 121.96533 * 359.97438 * 24 23 22 26 26 C 1.38850 * 121.05842 * 359.97438 * 25 24 23 27 27 O 1.35924 * 120.39001 * 180.02562 * 26 25 24 28 28 C 1.38810 * 119.22393 * 359.76934 * 26 25 24 29 29 H 0.97007 * 119.99583 * 0.02562 * 1 2 3 30 30 H 1.09006 * 109.46845 * 59.99993 * 9 7 2 31 31 H 1.08998 * 109.46905 * 300.00308 * 9 7 2 32 32 H 1.08995 * 109.47172 * 29.99564 * 11 10 9 33 33 H 1.09001 * 109.47216 * 150.00001 * 11 10 9 34 34 H 1.07998 * 120.79441 * 0.02562 * 13 12 11 35 35 H 1.08004 * 120.42208 * 180.22121 * 14 13 12 36 36 H 1.08000 * 119.62074 * 179.74747 * 15 14 13 37 37 H 1.08003 * 119.61907 * 180.02562 * 17 16 15 38 38 H 1.08003 * 119.99627 * 352.93172 * 20 18 10 39 39 H 1.08003 * 120.00010 * 169.08600 * 21 20 18 40 40 H 1.07998 * 119.67434 * 359.97426 * 23 22 21 41 41 H 1.08001 * 119.47133 * 180.02562 * 25 24 23 42 42 H 0.96702 * 114.00329 * 89.99445 * 27 26 25 43 43 H 1.08004 * 120.89277 * 180.25952 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6961 -1.2125 5 1 1.2844 2.7464 -0.0006 6 1 3.1029 1.6962 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4993 0.0005 10 7 2.2028 -3.6128 0.0005 11 6 2.6788 -4.1695 -1.2682 12 6 1.7620 -5.2837 -1.7033 13 6 2.0110 -6.5908 -1.3127 14 6 1.1383 -7.5825 -1.7330 15 6 0.0625 -7.2396 -2.5303 16 7 -0.1405 -5.9863 -2.8865 17 6 0.6661 -5.0166 -2.5015 18 6 2.6406 -4.1250 1.1677 19 8 3.4317 -5.0498 1.1677 20 6 2.1603 -3.5725 2.4358 21 6 2.4845 -4.1728 3.5984 22 6 3.1113 -5.5048 3.5894 23 6 4.1912 -5.7882 4.4317 24 7 4.7532 -6.9783 4.4247 25 6 4.3298 -7.9460 3.6343 26 6 3.2627 -7.7484 2.7682 27 8 2.8374 -8.7551 1.9601 28 6 2.6319 -6.5122 2.7412 29 1 -0.4850 0.8401 -0.0004 30 1 0.6245 -2.5571 -0.8897 31 1 0.6238 -2.5567 0.8903 32 1 2.6866 -3.3879 -2.0278 33 1 3.6882 -4.5596 -1.1379 34 1 2.8623 -6.8299 -0.6927 35 1 1.2995 -8.6109 -1.4448 36 1 -0.6197 -8.0069 -2.8653 37 1 0.4673 -4.0017 -2.8129 38 1 1.5463 -2.6840 2.4396 39 1 2.2844 -3.6765 4.5366 40 1 4.5681 -5.0227 5.0938 41 1 4.8206 -8.9077 3.6619 42 1 2.1545 -9.3146 2.3549 43 1 1.7966 -6.3302 2.0810 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000254979942.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:21 Heat of formation + Delta-G solvation = 7.142939 kcal Electronic energy + Delta-G solvation = -29282.108421 eV Core-core repulsion = 25292.817297 eV Total energy + Delta-G solvation = -3989.291125 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.64580 -41.14719 -40.30704 -38.15044 -37.03948 -35.33782 -34.68783 -33.61593 -32.64588 -31.76069 -30.71940 -29.36856 -27.70782 -25.47822 -24.97016 -24.38962 -24.15138 -23.40661 -21.96904 -19.80865 -19.04929 -18.58789 -18.24164 -17.98935 -17.83556 -17.56910 -17.09544 -16.98465 -16.48575 -16.28403 -15.96770 -15.41826 -15.10231 -14.82180 -14.48850 -14.34343 -14.24081 -14.14782 -13.95908 -13.88917 -13.85520 -13.46957 -13.21094 -13.15014 -12.78023 -12.68186 -12.45526 -12.28185 -12.05998 -11.75485 -11.51302 -10.86089 -10.71495 -10.53976 -10.47006 -10.33981 -10.02367 -9.93310 -9.44234 -9.31815 -8.20252 -6.35195 -0.37278 0.10991 0.26928 0.32831 0.84831 1.43182 1.44740 1.51881 2.26541 2.41484 2.46119 2.80693 2.95626 3.10451 3.15101 3.52888 3.61131 3.73633 3.81068 3.87406 3.93493 3.98212 4.03884 4.08761 4.10352 4.39406 4.47681 4.64020 4.66043 4.71829 4.73267 4.83438 4.88186 5.03927 5.09178 5.17095 5.20558 5.31630 5.35507 5.44519 5.63882 5.67869 5.76762 5.81176 6.04381 6.53831 6.77611 6.80176 7.00008 7.01093 7.29722 7.40393 8.84741 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008637 B = 0.004833 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3241.065893 B = 5791.937108 C = 8495.927262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.026 3.974 3 Si 0.954 3.046 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.546 4.546 8 H 0.052 0.948 9 C 0.255 3.745 10 N -0.586 5.586 11 C 0.163 3.837 12 C -0.155 4.155 13 C -0.058 4.058 14 C -0.165 4.165 15 C 0.090 3.910 16 N -0.510 5.510 17 C 0.100 3.900 18 C 0.536 3.464 19 O -0.570 6.570 20 C -0.202 4.202 21 C -0.029 4.029 22 C -0.101 4.101 23 C 0.096 3.904 24 N -0.494 5.494 25 C 0.074 3.926 26 C 0.045 3.955 27 O -0.496 6.496 28 C -0.032 4.032 29 H 0.268 0.732 30 H 0.020 0.980 31 H 0.029 0.971 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.128 0.872 35 H 0.164 0.836 36 H 0.186 0.814 37 H 0.148 0.852 38 H 0.136 0.864 39 H 0.175 0.825 40 H 0.179 0.821 41 H 0.177 0.823 42 H 0.407 0.593 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.055 -15.314 5.013 16.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.175 4.175 3 Si 0.779 3.221 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.584 4.584 8 H 0.070 0.930 9 C 0.135 3.865 10 N -0.314 5.314 11 C 0.040 3.960 12 C -0.158 4.158 13 C -0.084 4.084 14 C -0.184 4.184 15 C -0.067 4.067 16 N -0.219 5.219 17 C -0.056 4.056 18 C 0.328 3.672 19 O -0.454 6.454 20 C -0.222 4.222 21 C -0.049 4.049 22 C -0.104 4.104 23 C -0.060 4.060 24 N -0.203 5.203 25 C -0.084 4.084 26 C -0.001 4.001 27 O -0.307 6.307 28 C -0.058 4.058 29 H 0.077 0.923 30 H 0.038 0.962 31 H 0.047 0.953 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.146 0.854 35 H 0.181 0.819 36 H 0.203 0.797 37 H 0.165 0.835 38 H 0.154 0.846 39 H 0.192 0.808 40 H 0.196 0.804 41 H 0.194 0.806 42 H 0.266 0.734 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.654 -15.368 4.580 16.254 hybrid contribution -0.192 1.280 -0.178 1.306 sum 2.462 -14.088 4.402 14.964 Atomic orbital electron populations 1.70005 1.07167 1.28251 1.50258 1.25585 0.95468 1.02086 0.94315 0.85674 0.78433 0.79121 0.78858 1.19984 1.20782 1.19586 1.21613 0.93219 0.91490 1.52085 0.92968 1.19089 0.87424 0.82681 0.97350 1.48170 1.44605 1.33786 1.04859 1.20110 0.96074 0.93704 0.86137 1.21237 0.98678 0.96130 0.99725 1.21656 0.98902 0.92073 0.95800 1.22422 0.95509 1.01511 0.99000 1.23337 0.96273 0.93211 0.93863 1.67711 1.29225 1.01895 1.23055 1.22691 0.90186 0.98640 0.94107 1.18717 0.81156 0.82074 0.85233 1.90747 1.36821 1.30085 1.87731 1.23287 1.03459 1.03308 0.92179 1.22546 0.92316 0.91523 0.98556 1.19992 0.98206 0.94354 0.97802 1.23197 0.91747 0.94245 0.96828 1.67607 1.29022 1.01473 1.22238 1.23389 0.94544 0.99375 0.91108 1.19272 0.97360 0.89103 0.94394 1.84824 1.61110 1.42668 1.42101 1.21825 0.98372 0.92486 0.93157 0.92304 0.96170 0.95295 0.89537 0.90108 0.85360 0.81866 0.79684 0.83501 0.84606 0.80764 0.80399 0.80626 0.73441 0.87024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.30 13.29 21.45 0.28 -49.02 16 2 C 0.03 1.34 5.46 84.66 0.46 1.80 16 3 Si 0.95 40.84 29.54 68.60 2.03 42.87 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 6 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.55 -27.44 9.39 25.60 0.24 -27.20 16 8 H 0.05 2.68 7.81 -2.91 -0.02 2.66 16 9 C 0.26 11.79 4.83 85.64 0.41 12.20 16 10 N -0.59 -23.67 2.44 -835.50 -2.04 -25.70 16 11 C 0.16 5.93 5.56 85.64 0.48 6.40 16 12 C -0.15 -5.15 5.48 -19.77 -0.11 -5.26 16 13 C -0.06 -1.73 9.86 22.47 0.22 -1.51 16 14 C -0.17 -3.97 10.11 22.36 0.23 -3.74 16 15 C 0.09 2.26 11.18 84.69 0.95 3.20 16 16 N -0.51 -16.28 10.36 -195.84 -2.03 -18.31 16 17 C 0.10 3.40 10.86 84.67 0.92 4.32 16 18 C 0.54 20.86 6.69 86.38 0.58 21.44 16 19 O -0.57 -22.62 11.37 -4.34 -0.05 -22.67 16 20 C -0.20 -6.99 9.06 23.61 0.21 -6.77 16 21 C -0.03 -0.80 9.84 23.84 0.23 -0.56 16 22 C -0.10 -2.86 4.54 -20.06 -0.09 -2.95 16 23 C 0.10 2.50 10.96 85.12 0.93 3.43 16 24 N -0.49 -13.46 10.34 -194.15 -2.01 -15.46 16 25 C 0.07 1.82 11.13 84.82 0.94 2.77 16 26 C 0.05 1.17 6.73 22.55 0.15 1.32 16 27 O -0.50 -10.46 13.52 -92.69 -1.25 -11.71 16 28 C -0.03 -0.94 6.68 22.87 0.15 -0.79 16 29 H 0.27 13.74 8.31 -92.70 -0.77 12.97 16 30 H 0.02 1.00 8.07 -2.38 -0.02 0.98 16 31 H 0.03 1.40 6.19 -2.39 -0.01 1.38 16 32 H 0.09 3.13 8.02 -2.39 -0.02 3.11 16 33 H 0.08 2.94 7.37 -2.39 -0.02 2.92 16 34 H 0.13 4.11 7.71 -2.91 -0.02 4.09 16 35 H 0.16 2.81 8.06 -2.91 -0.02 2.78 16 36 H 0.19 3.17 8.06 -2.91 -0.02 3.14 16 37 H 0.15 5.07 8.06 -2.91 -0.02 5.05 16 38 H 0.14 5.06 6.34 -2.91 -0.02 5.04 16 39 H 0.18 3.34 8.06 -2.91 -0.02 3.31 16 40 H 0.18 3.61 8.06 -2.91 -0.02 3.58 16 41 H 0.18 3.33 8.06 -2.91 -0.02 3.30 16 42 H 0.41 4.20 9.06 -74.06 -0.67 3.52 16 43 H 0.11 3.62 7.11 -2.91 -0.02 3.60 16 Total: -1.00 -65.44 374.85 2.23 -63.21 By element: Atomic # 1 Polarization: 28.31 SS G_CDS: 0.38 Total: 28.69 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: 6.91 Total: 8.11 kcal Atomic # 7 Polarization: -102.71 SS G_CDS: -5.79 Total: -108.50 kcal Atomic # 8 Polarization: -33.08 SS G_CDS: -1.30 Total: -34.38 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.87 kcal Total: -65.44 2.23 -63.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254979942.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.350 kcal (2) G-P(sol) polarization free energy of solvation -65.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds