Wall clock time and date at job start Sat Apr 11 2020 05:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00344 * 2 1 4 4 H 1.48507 * 109.46907 * 269.99607 * 3 2 1 5 5 H 1.48500 * 109.47007 * 29.99286 * 3 2 1 6 6 H 1.48496 * 109.47198 * 149.99829 * 3 2 1 7 7 C 1.37881 * 119.99516 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99956 * 181.79881 * 7 2 1 9 9 C 1.50697 * 120.00032 * 1.79983 * 7 2 1 10 10 C 1.53006 * 115.55323 * 265.37663 * 9 7 2 11 11 S 1.81398 * 109.46566 * 29.22980 * 10 9 7 12 12 O 1.42096 * 110.54435 * 75.15973 * 11 10 9 13 13 O 1.42103 * 110.54602 * 298.40115 * 11 10 9 14 14 N 1.65609 * 104.44775 * 186.78034 * 11 10 9 15 15 C 1.46952 * 120.65306 * 264.45477 * 14 11 10 16 16 C 1.53188 * 108.88968 * 126.46266 * 15 14 11 17 17 C 1.53038 * 109.31384 * 54.55242 * 16 15 14 18 18 C 1.53031 * 109.54107 * 298.63799 * 17 16 15 19 19 C 1.46921 * 120.62794 * 84.26555 * 14 11 10 20 20 H 1.09009 * 109.58412 * 113.68266 * 19 14 11 21 21 C 1.50697 * 109.59104 * 353.40141 * 19 14 11 22 22 N 1.30501 * 125.64970 * 323.77294 * 21 19 14 23 23 C 1.34124 * 109.26091 * 179.89295 * 22 21 19 24 24 C 1.34673 * 108.01797 * 0.36984 * 23 22 21 25 25 N 1.35047 * 125.65304 * 144.08097 * 21 19 14 26 26 H 0.96996 * 126.39769 * 359.94396 * 25 21 19 27 27 C 1.52997 * 117.52003 * 51.08136 * 9 7 2 28 28 C 1.53004 * 60.00247 * 107.47958 * 27 9 7 29 29 H 0.96998 * 119.99433 * 5.03226 * 1 2 3 30 30 H 1.08997 * 109.46935 * 269.23373 * 10 9 7 31 31 H 1.08994 * 109.46869 * 149.23132 * 10 9 7 32 32 H 1.09004 * 109.59732 * 6.59787 * 15 14 11 33 33 H 1.09003 * 109.46701 * 246.24761 * 15 14 11 34 34 H 1.09004 * 109.49682 * 294.60165 * 16 15 14 35 35 H 1.09000 * 109.52616 * 174.52039 * 16 15 14 36 36 H 1.08998 * 109.45883 * 178.61227 * 17 16 15 37 37 H 1.09002 * 109.44864 * 58.65313 * 17 16 15 38 38 H 1.09000 * 109.49713 * 301.41395 * 18 17 16 39 39 H 1.09000 * 109.52815 * 181.33118 * 18 17 16 40 40 H 1.07994 * 125.99378 * 180.11784 * 23 22 21 41 41 H 1.08004 * 126.59315 * 179.81304 * 24 23 22 42 42 H 1.09003 * 117.50351 * 214.96870 * 27 9 7 43 43 H 1.09003 * 117.49806 * 359.97438 * 27 9 7 44 44 H 1.08999 * 117.49829 * 252.51366 * 28 27 9 45 45 H 1.09000 * 117.49636 * 107.49139 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4969 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0841 -1.1944 0.0299 9 6 1.2515 -2.4989 -0.0399 10 6 0.9806 -3.1469 1.3194 11 16 0.8513 -1.8575 2.5888 12 8 -0.3946 -1.1817 2.4881 13 8 2.0706 -1.1350 2.6917 14 7 0.7493 -2.6915 4.0160 15 6 -0.5577 -2.9870 4.6192 16 6 -0.6518 -4.4925 4.8861 17 6 0.5451 -4.9323 5.7323 18 6 1.8416 -4.6575 4.9672 19 6 1.9639 -3.1538 4.7013 20 1 2.0742 -2.6232 5.6471 21 6 3.1660 -2.8907 3.8314 22 7 3.1983 -2.9840 2.5301 23 6 4.4291 -2.6764 2.0949 24 6 5.1907 -2.3892 3.1679 25 7 4.3899 -2.5250 4.2697 26 1 4.6524 -2.3845 5.1928 27 6 0.1889 -2.6684 -1.1276 28 6 1.5129 -3.4290 -1.2263 29 1 -0.4849 0.8368 -0.0737 30 1 1.7988 -3.8222 1.5695 31 1 0.0471 -3.7079 1.2749 32 1 -1.3521 -2.6866 3.9359 33 1 -0.6557 -2.4426 5.5585 34 1 -0.6448 -5.0311 3.9384 35 1 -1.5757 -4.7106 5.4216 36 1 0.4676 -5.9987 5.9444 37 1 0.5513 -4.3754 6.6693 38 1 1.8251 -5.1944 4.0188 39 1 2.6926 -4.9925 5.5602 40 1 4.7538 -2.6653 1.0650 41 1 6.2328 -2.1056 3.1604 42 1 -0.7031 -3.2416 -0.8749 43 1 0.0341 -1.8360 -1.8140 44 1 2.2292 -3.0969 -1.9778 45 1 1.4918 -4.5025 -1.0385 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000329638548.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:52 Heat of formation + Delta-G solvation = 57.580363 kcal Electronic energy + Delta-G solvation = -30856.544191 eV Core-core repulsion = 27004.884148 eV Total energy + Delta-G solvation = -3851.660043 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.63838 -38.24037 -36.42391 -35.55866 -34.21517 -32.40765 -32.06720 -31.72924 -31.57313 -28.18747 -27.64809 -25.19789 -24.28627 -23.39307 -21.15381 -20.89779 -20.48287 -20.10014 -19.07176 -18.35961 -17.16106 -16.29699 -15.99037 -15.38835 -14.83030 -14.71146 -14.42168 -14.30526 -14.02614 -13.89053 -13.58680 -13.49162 -13.29896 -12.99773 -12.78633 -12.64986 -12.35692 -11.96122 -11.50385 -11.29574 -11.17689 -10.89321 -10.81321 -10.72524 -10.61973 -10.47493 -10.33093 -10.29799 -10.14000 -9.99657 -9.65261 -9.43952 -9.07840 -8.99165 -8.73052 -8.45071 -8.12987 -7.75375 -7.71757 -5.85108 -3.94114 1.77950 2.51325 3.35033 3.45377 3.53627 3.62041 3.73362 4.05277 4.51658 4.61898 4.80833 4.88008 5.06840 5.13953 5.26823 5.36800 5.43477 5.44800 5.53768 5.56715 5.71420 5.73274 5.74565 5.87750 5.97506 6.00581 6.03943 6.10012 6.17179 6.24677 6.38404 6.41022 6.49948 6.63467 6.70075 6.83204 6.92292 6.98417 7.20737 7.28244 7.42831 7.57881 7.76403 7.83306 8.08990 8.55266 8.58078 9.11579 9.71448 11.15950 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012856 B = 0.006816 C = 0.005912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.408781 B = 4106.719681 C = 4734.624483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.062 3.938 3 Si 0.889 3.111 4 H -0.284 1.284 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.503 4.503 8 H 0.071 0.929 9 C 0.063 3.937 10 C -0.556 4.556 11 S 2.649 3.351 12 O -0.959 6.959 13 O -0.939 6.939 14 N -1.013 6.013 15 C 0.120 3.880 16 C -0.139 4.139 17 C -0.114 4.114 18 C -0.126 4.126 19 C 0.251 3.749 20 H 0.078 0.922 21 C 0.193 3.807 22 N -0.460 5.460 23 C 0.026 3.974 24 C -0.069 4.069 25 N -0.556 5.556 26 H 0.410 0.590 27 C -0.153 4.153 28 C -0.201 4.201 29 H 0.265 0.735 30 H 0.145 0.855 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.166 0.834 41 H 0.169 0.831 42 H 0.059 0.941 43 H 0.089 0.911 44 H 0.077 0.923 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.712 -10.621 12.822 17.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.144 4.144 3 Si 0.717 3.283 4 H -0.210 1.210 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.542 4.542 8 H 0.089 0.911 9 C 0.061 3.939 10 C -0.688 4.688 11 S 2.747 3.253 12 O -0.950 6.950 13 O -0.928 6.928 14 N -0.848 5.848 15 C -0.005 4.005 16 C -0.178 4.178 17 C -0.151 4.151 18 C -0.166 4.166 19 C 0.142 3.858 20 H 0.096 0.904 21 C -0.070 4.070 22 N -0.182 5.182 23 C -0.122 4.122 24 C -0.201 4.201 25 N -0.159 5.159 26 H 0.247 0.753 27 C -0.190 4.190 28 C -0.239 4.239 29 H 0.075 0.925 30 H 0.163 0.837 31 H 0.091 0.909 32 H 0.113 0.887 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.184 0.816 41 H 0.186 0.814 42 H 0.077 0.923 43 H 0.107 0.893 44 H 0.095 0.905 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.836 -9.730 12.312 16.155 hybrid contribution 1.225 0.700 0.613 1.539 sum 5.061 -9.030 12.926 16.560 Atomic orbital electron populations 1.70048 1.05265 1.27360 1.46637 1.25099 0.94950 0.99380 0.94996 0.86588 0.80810 0.83547 0.77389 1.21027 1.21422 1.19097 1.20507 0.93511 0.87587 1.52633 0.91094 1.18115 0.98574 0.93796 0.83447 1.30300 1.06929 1.16791 1.14823 1.04075 0.73601 0.75292 0.72295 1.93478 1.45665 1.70527 1.85285 1.93515 1.46165 1.69087 1.84049 1.58761 1.08971 1.75184 1.41879 1.21319 0.84960 0.94858 0.99384 1.21969 0.98163 0.96819 1.00801 1.21454 0.94347 1.00955 0.98379 1.21970 0.97975 0.94873 1.01743 1.18693 0.79845 0.94873 0.92415 0.90414 1.22780 0.87676 1.04852 0.91735 1.70052 1.22175 1.19905 1.06081 1.21970 0.88618 1.03010 0.98615 1.22500 0.98161 1.12974 0.86509 1.42729 1.10009 1.53812 1.09350 0.75325 1.22607 0.90330 1.00754 1.05304 1.22984 1.00974 0.95462 1.04519 0.92548 0.83712 0.90914 0.88665 0.92008 0.91246 0.90993 0.91686 0.91911 0.90401 0.91285 0.81636 0.81366 0.92285 0.89282 0.90457 0.92074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.95 10.65 55.43 0.59 -25.36 16 2 C 0.06 1.80 4.36 -17.82 -0.08 1.72 16 3 Si 0.89 23.58 29.54 -169.99 -5.02 18.56 16 4 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 5 H -0.29 -7.72 7.11 56.52 0.40 -7.31 16 6 H -0.27 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.50 -14.12 6.43 -34.44 -0.22 -14.35 16 8 H 0.07 2.00 7.71 -52.48 -0.40 1.60 16 9 C 0.06 1.60 1.97 -155.66 -0.31 1.30 16 10 C -0.56 -12.83 5.49 37.16 0.20 -12.63 16 11 S 2.65 63.56 3.51 -107.50 -0.38 63.18 16 12 O -0.96 -26.58 15.18 -57.54 -0.87 -27.45 16 13 O -0.94 -24.38 11.34 -57.54 -0.65 -25.04 16 14 N -1.01 -18.08 3.23 -107.68 -0.35 -18.43 16 15 C 0.12 1.79 6.34 -3.70 -0.02 1.77 16 16 C -0.14 -1.57 6.08 -26.61 -0.16 -1.73 16 17 C -0.11 -1.10 5.88 -26.70 -0.16 -1.26 16 18 C -0.13 -1.43 5.35 -26.62 -0.14 -1.57 16 19 C 0.25 3.67 3.40 -68.75 -0.23 3.44 16 20 H 0.08 0.97 8.14 -51.92 -0.42 0.55 16 21 C 0.19 3.23 5.07 -155.41 -0.79 2.45 16 22 N -0.46 -9.00 4.21 -10.82 -0.05 -9.05 16 23 C 0.03 0.48 11.45 -17.81 -0.20 0.28 16 24 C -0.07 -1.01 12.04 -16.56 -0.20 -1.21 16 25 N -0.56 -7.63 6.15 -10.22 -0.06 -7.69 16 26 H 0.41 3.94 8.96 -40.82 -0.37 3.57 16 27 C -0.15 -3.83 8.83 -26.73 -0.24 -4.06 16 28 C -0.20 -4.60 9.95 -26.73 -0.27 -4.86 16 29 H 0.26 7.81 8.32 -40.82 -0.34 7.47 16 30 H 0.15 3.11 5.55 -51.93 -0.29 2.82 16 31 H 0.07 1.58 7.87 -51.93 -0.41 1.17 16 32 H 0.10 1.57 6.94 -51.93 -0.36 1.21 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.17 2.92 8.06 -52.49 -0.42 2.49 16 41 H 0.17 1.83 8.06 -52.48 -0.42 1.40 16 42 H 0.06 1.40 8.03 -51.93 -0.42 0.98 16 43 H 0.09 2.38 7.77 -51.93 -0.40 1.98 16 44 H 0.08 1.74 8.14 -51.93 -0.42 1.31 16 45 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 356.46 15.07 5.37 5.37 Total: -1.00 -36.92 356.46 -11.09 -48.01 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -6.86 Total: 8.62 kcal Atomic # 6 Polarization: -27.91 SS G_CDS: -2.81 Total: -30.72 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: 0.13 Total: -60.53 kcal Atomic # 8 Polarization: -50.96 SS G_CDS: -1.53 Total: -52.49 kcal Atomic # 14 Polarization: 23.58 SS G_CDS: -5.02 Total: 18.56 kcal Atomic # 16 Polarization: 63.56 SS G_CDS: -0.38 Total: 63.18 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -36.92 -11.09 -48.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329638548.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.591 kcal (2) G-P(sol) polarization free energy of solvation -36.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds