Wall clock time and date at job start Sat Apr 11 2020 05:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47229 * 119.19752 * 3 2 1 5 5 N 1.46501 * 109.47287 * 179.97438 * 4 3 2 6 6 C 1.46498 * 120.00042 * 275.00239 * 5 4 3 7 7 C 1.50698 * 109.47066 * 274.99607 * 6 5 4 8 8 H 1.08002 * 120.00025 * 0.02562 * 7 6 5 9 9 C 1.37877 * 119.99735 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00161 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 119.99746 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46942 * 90.00012 * 11 9 7 13 13 H 1.48501 * 109.46955 * 209.99823 * 11 9 7 14 14 H 1.48493 * 109.46959 * 330.00071 * 11 9 7 15 15 S 1.65601 * 119.99709 * 95.00129 * 5 4 3 16 16 O 1.42096 * 104.27550 * 153.93243 * 15 5 4 17 17 O 1.42097 * 104.27967 * 26.07087 * 15 5 4 18 18 C 1.81409 * 104.44942 * 270.00128 * 15 5 4 19 19 C 1.52999 * 109.46814 * 180.02562 * 18 15 5 20 20 C 1.47202 * 109.46993 * 299.99496 * 19 18 15 21 21 N 6.52451 * 126.77179 * 41.83671 * 2 1 3 22 22 C 1.53006 * 109.46623 * 179.97438 * 19 18 15 23 23 C 1.52999 * 109.46626 * 179.97438 * 22 19 18 24 24 C 1.52997 * 109.46991 * 60.00378 * 23 22 19 25 25 C 1.52996 * 109.47131 * 299.99311 * 24 23 22 26 26 C 1.52997 * 109.47317 * 60.00042 * 19 18 15 27 27 H 1.09000 * 109.47702 * 359.19540 * 3 2 1 28 28 H 1.09003 * 109.46873 * 239.19740 * 3 2 1 29 29 H 1.09001 * 109.47076 * 59.99868 * 4 3 2 30 30 H 1.08997 * 109.47043 * 300.00187 * 4 3 2 31 31 H 1.08995 * 109.47048 * 35.00313 * 6 5 4 32 32 H 1.09000 * 109.46693 * 155.00045 * 6 5 4 33 33 H 0.97004 * 119.99636 * 179.97438 * 10 9 7 34 34 H 1.09000 * 109.47067 * 60.00006 * 18 15 5 35 35 H 1.09001 * 109.46593 * 300.00012 * 18 15 5 36 36 H 1.08993 * 109.46955 * 300.00075 * 22 19 18 37 37 H 1.09000 * 109.47050 * 59.99904 * 22 19 18 38 38 H 1.09002 * 109.46719 * 180.02562 * 23 22 19 39 39 H 1.08993 * 109.47839 * 299.99931 * 23 22 19 40 40 H 1.09001 * 109.47289 * 179.97438 * 24 23 22 41 41 H 1.09000 * 109.47611 * 59.99933 * 24 23 22 42 42 H 1.08996 * 109.47452 * 300.00000 * 25 24 23 43 43 H 1.09000 * 109.47054 * 180.02562 * 25 24 23 44 44 H 1.09002 * 109.47153 * 299.99641 * 26 19 18 45 45 H 1.08996 * 109.46952 * 59.99813 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1177 0.7046 -1.2592 5 7 4.5827 0.7058 -1.2589 6 6 5.3142 1.7558 -0.5458 7 6 5.4574 2.9623 -1.4373 8 1 5.0444 2.9485 -2.4352 9 6 6.1156 4.0838 -0.9791 10 7 6.6189 4.1004 0.2358 11 14 6.2925 5.5797 -2.0840 12 1 5.1314 6.4834 -1.8832 13 1 7.5455 6.3006 -1.7441 14 1 6.3412 5.1441 -3.5027 15 16 5.4117 -0.4799 -2.0647 16 8 6.6578 0.1218 -2.3880 17 8 4.5163 -0.9031 -3.0836 18 6 5.6389 -1.7911 -0.8319 19 6 6.4025 -2.9573 -1.4626 20 6 5.6374 -3.4845 -2.6043 21 7 5.0418 -3.8939 -3.4860 22 6 6.5946 -4.0630 -0.4225 23 6 7.3576 -5.2294 -1.0534 24 6 8.7246 -4.7420 -1.5380 25 6 8.5325 -3.6364 -2.5779 26 6 7.7696 -2.4697 -1.9462 27 1 2.9719 -1.0267 0.0144 28 1 2.9710 0.5271 0.8827 29 1 2.7539 1.7320 -1.2736 30 1 2.7546 0.1782 -2.1419 31 1 4.7665 2.0325 0.3550 32 1 6.3027 1.3875 -0.2713 33 1 7.0824 4.8894 0.5580 34 1 4.6648 -2.1382 -0.4870 35 1 6.2057 -1.4008 0.0134 36 1 7.1612 -3.6723 0.4226 37 1 5.6207 -4.4105 -0.0776 38 1 7.4941 -6.0173 -0.3126 39 1 6.7907 -5.6200 -1.8984 40 1 9.2684 -5.5731 -1.9870 41 1 9.2916 -4.3515 -0.6930 42 1 7.9655 -4.0269 -3.4230 43 1 9.5063 -3.2895 -2.9235 44 1 7.6332 -1.6818 -2.6870 45 1 8.3361 -2.0793 -1.1007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331085810.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:55 Heat of formation + Delta-G solvation = -32.038464 kcal Electronic energy + Delta-G solvation = -28478.811527 eV Core-core repulsion = 24623.265320 eV Total energy + Delta-G solvation = -3855.546207 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.93494 -37.29503 -36.72310 -35.83046 -35.77132 -35.44638 -33.30672 -32.80947 -31.16462 -30.78219 -27.32246 -26.96648 -23.91142 -23.21865 -23.08429 -22.14974 -20.96815 -18.41958 -17.77604 -17.19302 -16.94209 -16.62913 -15.95683 -15.74483 -15.45179 -14.89507 -14.77776 -14.69211 -14.57095 -14.01779 -13.82936 -13.61457 -13.44066 -13.28331 -12.90057 -12.64793 -12.55760 -12.45897 -12.32228 -12.25574 -12.13165 -12.02067 -11.84526 -11.74960 -11.54433 -11.51257 -11.38412 -11.16350 -10.98573 -10.95364 -10.80095 -10.63937 -10.61923 -10.45332 -10.14715 -10.02688 -9.81410 -8.51243 -8.30613 -6.13979 -4.16969 0.54345 2.59275 2.62278 2.74089 2.84215 3.10887 3.28966 3.35987 3.42362 3.53095 3.98246 4.12377 4.24568 4.31237 4.39702 4.44267 4.50577 4.75502 4.88315 4.89573 4.98032 5.09446 5.14524 5.16590 5.21658 5.22316 5.34474 5.37555 5.48657 5.54269 5.62344 5.68311 5.74991 5.83164 5.85718 5.97526 6.03247 6.13434 6.13863 6.29234 6.99807 7.20410 7.38054 7.44125 7.61081 7.84221 8.10517 8.85528 9.48994 10.94668 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010323 B = 0.004499 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2711.650416 B = 6222.535251 C = 7936.348120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.218 3.782 3 C -0.055 4.055 4 C 0.123 3.877 5 N -0.979 5.979 6 C 0.252 3.748 7 C -0.527 4.527 8 H 0.062 0.938 9 C 0.065 3.935 10 N -0.896 5.896 11 Si 0.894 3.106 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.272 1.272 15 S 2.594 3.406 16 O -0.922 6.922 17 O -0.960 6.960 18 C -0.647 4.647 19 C 0.064 3.936 20 C 0.182 3.818 21 N -0.390 5.390 22 C -0.099 4.099 23 C -0.127 4.127 24 C -0.121 4.121 25 C -0.123 4.123 26 C -0.143 4.143 27 H 0.099 0.901 28 H 0.122 0.878 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.041 0.959 32 H 0.043 0.957 33 H 0.264 0.736 34 H 0.136 0.864 35 H 0.156 0.844 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.061 0.939 43 H 0.077 0.923 44 H 0.091 0.909 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.810 -16.100 3.841 16.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.121 5.121 2 C -0.101 4.101 3 C -0.097 4.097 4 C -0.006 4.006 5 N -0.817 5.817 6 C 0.130 3.870 7 C -0.567 4.567 8 H 0.080 0.920 9 C -0.138 4.138 10 N -0.535 5.535 11 Si 0.721 3.279 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.197 1.197 15 S 2.684 3.316 16 O -0.912 6.912 17 O -0.950 6.950 18 C -0.773 4.773 19 C 0.060 3.940 20 C -0.138 4.138 21 N -0.064 5.064 22 C -0.138 4.138 23 C -0.164 4.164 24 C -0.159 4.159 25 C -0.160 4.160 26 C -0.181 4.181 27 H 0.117 0.883 28 H 0.140 0.860 29 H 0.119 0.881 30 H 0.109 0.891 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.154 0.846 35 H 0.174 0.826 36 H 0.110 0.890 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.080 0.920 43 H 0.096 0.904 44 H 0.110 0.890 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.593 -16.566 1.744 16.734 hybrid contribution 0.636 0.855 0.605 1.226 sum 2.229 -15.711 2.349 16.041 Atomic orbital electron populations 1.81200 1.13028 1.09014 1.08830 1.29002 0.95047 0.92964 0.93041 1.19976 0.81810 1.03963 1.03993 1.21125 0.80832 1.03426 0.95195 1.57514 1.12882 1.40176 1.71133 1.19205 0.91155 0.84390 0.92205 1.21437 1.36215 0.98275 1.00726 0.92002 1.24880 0.95036 0.98698 0.95155 1.69892 1.37333 1.29843 1.16418 0.86554 0.77569 0.82489 0.81239 1.20635 1.21059 1.19661 1.05626 0.75073 0.74937 0.75933 1.93646 1.43491 1.72776 1.81288 1.93582 1.64859 1.83376 1.53171 1.31154 1.09822 1.15407 1.20904 1.17865 0.92945 0.94599 0.88638 1.29125 0.94327 0.95549 0.94759 1.81351 1.07906 1.07467 1.09660 1.21634 1.01868 0.93759 0.96585 1.21636 0.96522 0.97502 1.00789 1.21580 0.96841 0.98306 0.99160 1.21584 1.00993 0.95185 0.98267 1.22220 0.92736 0.99371 1.03764 0.88275 0.85993 0.88106 0.89073 0.94135 0.93895 0.92636 0.84583 0.82614 0.89015 0.90639 0.90978 0.92033 0.91699 0.91091 0.92019 0.90446 0.89020 0.87988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.89 18.54 42.15 0.78 -6.10 16 2 C 0.22 2.79 15.43 -20.76 -0.32 2.47 16 3 C -0.06 -0.57 6.02 -29.52 -0.18 -0.75 16 4 C 0.12 1.74 5.61 -4.04 -0.02 1.72 16 5 N -0.98 -16.46 2.70 -115.67 -0.31 -16.77 16 6 C 0.25 5.26 5.01 -5.20 -0.03 5.24 16 7 C -0.53 -13.39 9.38 -34.44 -0.32 -13.72 16 8 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 10 N -0.90 -24.01 13.29 55.43 0.74 -23.27 16 11 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 15 S 2.59 42.54 4.56 -107.50 -0.49 42.05 16 16 O -0.92 -18.39 14.60 -57.54 -0.84 -19.23 16 17 O -0.96 -17.95 15.23 -57.54 -0.88 -18.83 16 18 C -0.65 -6.65 5.15 37.16 0.19 -6.46 16 19 C 0.06 0.68 0.50 -157.29 -0.08 0.60 16 20 C 0.18 2.48 9.55 -20.63 -0.20 2.28 16 21 N -0.39 -6.33 18.56 42.32 0.79 -5.54 16 22 C -0.10 -0.72 4.71 -26.73 -0.13 -0.85 16 23 C -0.13 -0.92 5.70 -26.73 -0.15 -1.07 16 24 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 25 C -0.12 -1.14 5.70 -26.71 -0.15 -1.29 16 26 C -0.14 -1.54 4.23 -26.71 -0.11 -1.66 16 27 H 0.10 0.73 6.96 -51.93 -0.36 0.37 16 28 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.10 1.50 8.11 -51.93 -0.42 1.08 16 30 H 0.09 1.29 6.82 -51.93 -0.35 0.94 16 31 H 0.04 0.83 8.11 -51.93 -0.42 0.41 16 32 H 0.04 0.93 7.61 -51.93 -0.40 0.53 16 33 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 34 H 0.14 1.01 6.96 -51.92 -0.36 0.64 16 35 H 0.16 1.18 8.14 -51.92 -0.42 0.76 16 36 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.54 7.23 -51.93 -0.38 0.16 16 40 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.64 7.22 -51.93 -0.38 0.27 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.09 1.23 5.46 -51.93 -0.28 0.95 16 45 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 380.61 15.07 5.74 5.74 Total: -1.00 -34.08 380.61 -7.95 -42.03 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -6.70 Total: -2.86 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: -1.75 Total: -12.92 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: 1.99 Total: -51.69 kcal Atomic # 8 Polarization: -36.34 SS G_CDS: -1.72 Total: -38.06 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 42.54 SS G_CDS: -0.49 Total: 42.05 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.08 -7.95 -42.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331085810.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.990 kcal (2) G-P(sol) polarization free energy of solvation -34.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds