Wall clock time and date at job start Sat Apr 11 2020 05:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47229 * 119.19752 * 3 2 1 5 5 N 1.46501 * 109.47287 * 179.97438 * 4 3 2 6 6 C 1.46498 * 120.00042 * 275.00239 * 5 4 3 7 7 C 1.50698 * 109.47066 * 274.99607 * 6 5 4 8 8 H 1.08002 * 120.00025 * 0.02562 * 7 6 5 9 9 C 1.37877 * 119.99735 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00161 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 119.99746 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46942 * 90.00012 * 11 9 7 13 13 H 1.48501 * 109.46955 * 209.99823 * 11 9 7 14 14 H 1.48493 * 109.46959 * 330.00071 * 11 9 7 15 15 S 1.65601 * 119.99709 * 95.00129 * 5 4 3 16 16 O 1.42096 * 104.27550 * 153.93243 * 15 5 4 17 17 O 1.42097 * 104.27967 * 26.07087 * 15 5 4 18 18 C 1.81409 * 104.44942 * 270.00128 * 15 5 4 19 19 C 1.52999 * 109.46814 * 180.02562 * 18 15 5 20 20 C 1.47202 * 109.46993 * 299.99496 * 19 18 15 21 21 N 6.52451 * 126.77179 * 41.83671 * 2 1 3 22 22 C 1.53006 * 109.46623 * 179.97438 * 19 18 15 23 23 C 1.52999 * 109.46626 * 179.97438 * 22 19 18 24 24 C 1.52997 * 109.46991 * 60.00378 * 23 22 19 25 25 C 1.52996 * 109.47131 * 299.99311 * 24 23 22 26 26 C 1.52997 * 109.47317 * 60.00042 * 19 18 15 27 27 H 1.09000 * 109.47702 * 359.19540 * 3 2 1 28 28 H 1.09003 * 109.46873 * 239.19740 * 3 2 1 29 29 H 1.09001 * 109.47076 * 59.99868 * 4 3 2 30 30 H 1.08997 * 109.47043 * 300.00187 * 4 3 2 31 31 H 1.08995 * 109.47048 * 35.00313 * 6 5 4 32 32 H 1.09000 * 109.46693 * 155.00045 * 6 5 4 33 33 H 0.97004 * 119.99636 * 179.97438 * 10 9 7 34 34 H 1.09000 * 109.47067 * 60.00006 * 18 15 5 35 35 H 1.09001 * 109.46593 * 300.00012 * 18 15 5 36 36 H 1.08993 * 109.46955 * 300.00075 * 22 19 18 37 37 H 1.09000 * 109.47050 * 59.99904 * 22 19 18 38 38 H 1.09002 * 109.46719 * 180.02562 * 23 22 19 39 39 H 1.08993 * 109.47839 * 299.99931 * 23 22 19 40 40 H 1.09001 * 109.47289 * 179.97438 * 24 23 22 41 41 H 1.09000 * 109.47611 * 59.99933 * 24 23 22 42 42 H 1.08996 * 109.47452 * 300.00000 * 25 24 23 43 43 H 1.09000 * 109.47054 * 180.02562 * 25 24 23 44 44 H 1.09002 * 109.47153 * 299.99641 * 26 19 18 45 45 H 1.08996 * 109.46952 * 59.99813 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1177 0.7046 -1.2592 5 7 4.5827 0.7058 -1.2589 6 6 5.3142 1.7558 -0.5458 7 6 5.4574 2.9623 -1.4373 8 1 5.0444 2.9485 -2.4352 9 6 6.1156 4.0838 -0.9791 10 7 6.6189 4.1004 0.2358 11 14 6.2925 5.5797 -2.0840 12 1 5.1314 6.4834 -1.8832 13 1 7.5455 6.3006 -1.7441 14 1 6.3412 5.1441 -3.5027 15 16 5.4117 -0.4799 -2.0647 16 8 6.6578 0.1218 -2.3880 17 8 4.5163 -0.9031 -3.0836 18 6 5.6389 -1.7911 -0.8319 19 6 6.4025 -2.9573 -1.4626 20 6 5.6374 -3.4845 -2.6043 21 7 5.0418 -3.8939 -3.4860 22 6 6.5946 -4.0630 -0.4225 23 6 7.3576 -5.2294 -1.0534 24 6 8.7246 -4.7420 -1.5380 25 6 8.5325 -3.6364 -2.5779 26 6 7.7696 -2.4697 -1.9462 27 1 2.9719 -1.0267 0.0144 28 1 2.9710 0.5271 0.8827 29 1 2.7539 1.7320 -1.2736 30 1 2.7546 0.1782 -2.1419 31 1 4.7665 2.0325 0.3550 32 1 6.3027 1.3875 -0.2713 33 1 7.0824 4.8894 0.5580 34 1 4.6648 -2.1382 -0.4870 35 1 6.2057 -1.4008 0.0134 36 1 7.1612 -3.6723 0.4226 37 1 5.6207 -4.4105 -0.0776 38 1 7.4941 -6.0173 -0.3126 39 1 6.7907 -5.6200 -1.8984 40 1 9.2684 -5.5731 -1.9870 41 1 9.2916 -4.3515 -0.6930 42 1 7.9655 -4.0269 -3.4230 43 1 9.5063 -3.2895 -2.9235 44 1 7.6332 -1.6818 -2.6870 45 1 8.3361 -2.0793 -1.1007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331085810.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:54 Heat of formation + Delta-G solvation = -54.700357 kcal Electronic energy + Delta-G solvation = -28479.794220 eV Core-core repulsion = 24623.265320 eV Total energy + Delta-G solvation = -3856.528900 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.71168 -38.45298 -38.06827 -37.09157 -36.83952 -36.76815 -34.63964 -34.07953 -32.05652 -31.77600 -28.70147 -28.04337 -25.30825 -24.17480 -23.79917 -23.47734 -21.65505 -19.70559 -18.91935 -18.38498 -18.28944 -17.89818 -17.21105 -16.95505 -16.40722 -16.25223 -15.80006 -15.65660 -15.43202 -15.26570 -14.91090 -14.68911 -14.35619 -14.30660 -14.08940 -13.90288 -13.68201 -13.55839 -13.46008 -13.22149 -13.14334 -13.12752 -12.93202 -12.90568 -12.80333 -12.75169 -12.60600 -12.55030 -12.24950 -12.09925 -12.04035 -11.84988 -11.66578 -11.61047 -11.41009 -11.10173 -10.85758 -10.46988 -9.74731 -8.11555 -6.17792 -0.67069 1.42040 1.45609 1.52370 1.54907 1.60029 1.66441 1.84972 1.93596 2.47881 2.62549 2.97086 3.10216 3.22050 3.30333 3.36375 3.56205 3.74988 3.96957 4.10905 4.14321 4.16770 4.29152 4.30923 4.46881 4.52091 4.57655 4.58063 4.71733 4.76670 4.93809 5.08065 5.08797 5.13413 5.15247 5.24893 5.26353 5.37702 5.38299 5.41002 5.55884 5.58716 5.79767 5.97836 6.25877 6.42151 6.62163 6.88942 7.49522 8.95073 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010323 B = 0.004499 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2711.650416 B = 6222.535251 C = 7936.348120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C 0.242 3.758 3 C -0.045 4.045 4 C 0.116 3.884 5 N -0.983 5.983 6 C 0.264 3.736 7 C -0.543 4.543 8 H 0.041 0.959 9 C 0.024 3.976 10 N -0.915 5.915 11 Si 0.934 3.066 12 H -0.272 1.272 13 H -0.279 1.279 14 H -0.283 1.283 15 S 2.575 3.425 16 O -0.973 6.973 17 O -0.997 6.997 18 C -0.613 4.613 19 C 0.060 3.940 20 C 0.199 3.801 21 N -0.447 5.447 22 C -0.096 4.096 23 C -0.129 4.129 24 C -0.118 4.118 25 C -0.126 4.126 26 C -0.151 4.151 27 H 0.141 0.859 28 H 0.146 0.854 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.051 0.949 32 H 0.039 0.961 33 H 0.266 0.734 34 H 0.179 0.821 35 H 0.200 0.800 36 H 0.127 0.873 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.038 0.962 40 H 0.069 0.931 41 H 0.092 0.908 42 H 0.038 0.962 43 H 0.081 0.919 44 H 0.056 0.944 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.667 -17.932 7.069 19.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.173 5.173 2 C -0.075 4.075 3 C -0.087 4.087 4 C -0.012 4.012 5 N -0.819 5.819 6 C 0.142 3.858 7 C -0.582 4.582 8 H 0.059 0.941 9 C -0.176 4.176 10 N -0.555 5.555 11 Si 0.761 3.239 12 H -0.198 1.198 13 H -0.204 1.204 14 H -0.208 1.208 15 S 2.674 3.326 16 O -0.963 6.963 17 O -0.987 6.987 18 C -0.746 4.746 19 C 0.055 3.945 20 C -0.120 4.120 21 N -0.122 5.122 22 C -0.135 4.135 23 C -0.167 4.167 24 C -0.155 4.155 25 C -0.163 4.163 26 C -0.189 4.189 27 H 0.159 0.841 28 H 0.164 0.836 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.197 0.803 35 H 0.217 0.783 36 H 0.145 0.855 37 H 0.112 0.888 38 H 0.115 0.885 39 H 0.057 0.943 40 H 0.088 0.912 41 H 0.111 0.889 42 H 0.056 0.944 43 H 0.099 0.901 44 H 0.075 0.925 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.417 -18.336 4.914 19.136 hybrid contribution 0.439 1.347 -0.487 1.499 sum 2.856 -16.989 4.427 17.787 Atomic orbital electron populations 1.81230 1.14713 1.10925 1.10456 1.29360 0.95312 0.91329 0.91499 1.20061 0.79880 1.06250 1.02496 1.21162 0.79625 1.03131 0.97241 1.57233 1.13597 1.40394 1.70717 1.18843 0.91588 0.83777 0.91642 1.21832 1.35483 1.00352 1.00549 0.94095 1.25419 0.95353 1.00671 0.96197 1.69925 1.38142 1.30398 1.17081 0.85924 0.77943 0.80633 0.79398 1.19802 1.20416 1.20820 1.05777 0.73749 0.76132 0.76990 1.93593 1.44842 1.74854 1.82995 1.93541 1.65425 1.83816 1.55966 1.30898 1.13304 1.11651 1.18721 1.18286 0.91962 0.95720 0.88537 1.29885 0.93316 0.94151 0.94618 1.81354 1.09892 1.09625 1.11308 1.21793 1.03598 0.92146 0.95961 1.21679 0.96036 0.98271 1.00688 1.21592 0.97392 0.97501 0.99038 1.21615 1.00619 0.95673 0.98408 1.22324 0.93629 0.98946 1.04026 0.84095 0.83616 0.89808 0.89709 0.93141 0.94293 0.92528 0.80314 0.78260 0.85473 0.88791 0.88515 0.94331 0.91235 0.88919 0.94360 0.90058 0.92500 0.85324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -14.91 18.54 20.00 0.37 -14.54 16 2 C 0.24 5.72 15.43 89.44 1.38 7.10 16 3 C -0.05 -0.79 6.02 28.79 0.17 -0.61 16 4 C 0.12 3.18 5.61 86.38 0.48 3.66 16 5 N -0.98 -31.96 2.70 -519.86 -1.40 -33.36 16 6 C 0.26 10.80 5.01 85.63 0.43 11.23 16 7 C -0.54 -27.91 9.38 25.60 0.24 -27.67 16 8 H 0.04 2.21 7.81 -2.91 -0.02 2.19 16 9 C 0.02 1.24 5.46 84.65 0.46 1.70 16 10 N -0.92 -48.61 13.29 21.45 0.28 -48.33 16 11 Si 0.93 42.79 29.54 68.60 2.03 44.82 16 12 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 13 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 14 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 15 S 2.58 82.50 4.56 -56.49 -0.26 82.24 16 16 O -0.97 -39.61 14.60 -127.65 -1.86 -41.47 16 17 O -1.00 -37.99 15.23 -127.65 -1.94 -39.93 16 18 C -0.61 -9.79 5.15 71.98 0.37 -9.42 16 19 C 0.06 1.06 0.50 -53.99 -0.03 1.03 16 20 C 0.20 5.21 9.55 89.40 0.85 6.07 16 21 N -0.45 -14.69 18.56 20.06 0.37 -14.32 16 22 C -0.10 -0.86 4.71 30.60 0.14 -0.72 16 23 C -0.13 -1.37 5.70 30.59 0.17 -1.19 16 24 C -0.12 -1.30 5.92 30.59 0.18 -1.12 16 25 C -0.13 -2.18 5.70 30.61 0.17 -2.01 16 26 C -0.15 -2.97 4.23 30.61 0.13 -2.84 16 27 H 0.14 1.28 6.96 -2.39 -0.02 1.27 16 28 H 0.15 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.08 2.52 8.11 -2.39 -0.02 2.50 16 30 H 0.08 2.41 6.82 -2.39 -0.02 2.40 16 31 H 0.05 1.97 8.11 -2.39 -0.02 1.95 16 32 H 0.04 1.63 7.61 -2.39 -0.02 1.62 16 33 H 0.27 13.48 8.31 -92.71 -0.77 12.71 16 34 H 0.18 1.45 6.96 -2.39 -0.02 1.43 16 35 H 0.20 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.13 0.37 8.14 -2.39 -0.02 0.35 16 37 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.04 0.59 7.23 -2.39 -0.02 0.57 16 40 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.04 0.82 7.22 -2.39 -0.02 0.80 16 43 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.06 1.55 5.46 -2.39 -0.01 1.54 16 45 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -80.58 380.61 3.75 -76.83 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: 1.00 Total: 2.86 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: 5.17 Total: -14.80 kcal Atomic # 7 Polarization: -110.17 SS G_CDS: -0.37 Total: -110.55 kcal Atomic # 8 Polarization: -77.60 SS G_CDS: -3.81 Total: -81.40 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 16 Polarization: 82.50 SS G_CDS: -0.26 Total: 82.24 kcal Total: -80.58 3.75 -76.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331085810.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.126 kcal (2) G-P(sol) polarization free energy of solvation -80.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds