Wall clock time and date at job start Sat Apr 11 2020 05:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38612 * 120.45180 * 2 1 4 4 C 1.38580 * 118.40073 * 179.97438 * 3 2 1 5 5 N 1.32353 * 119.10337 * 0.02562 * 4 3 2 6 6 C 1.31773 * 120.82052 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.12470 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.47243 * 194.99948 * 7 6 5 9 9 N 1.46506 * 109.46937 * 315.00299 * 7 6 5 10 10 S 1.65597 * 119.99791 * 215.00116 * 9 7 6 11 11 O 1.42101 * 104.27612 * 181.07220 * 10 9 7 12 12 O 1.42101 * 104.27805 * 308.92463 * 10 9 7 13 13 C 1.81397 * 104.45432 * 64.99519 * 10 9 7 14 14 C 1.52999 * 109.47238 * 179.97438 * 13 10 9 15 15 C 1.53004 * 109.46697 * 180.02562 * 14 13 10 16 16 C 1.50700 * 109.46889 * 179.97438 * 15 14 13 17 17 H 1.08008 * 119.99751 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00174 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99918 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 119.99885 * 0.02562 * 18 16 15 21 21 H 1.48511 * 109.46903 * 89.99625 * 20 18 16 22 22 H 1.48493 * 109.47345 * 209.99373 * 20 18 16 23 23 H 1.48498 * 109.47461 * 329.99956 * 20 18 16 24 24 C 1.52997 * 109.47095 * 74.99641 * 7 6 5 25 25 C 1.53002 * 117.49786 * 128.74723 * 24 7 6 26 26 C 1.53009 * 117.49795 * 60.09069 * 24 7 6 27 27 N 1.31811 * 121.75694 * 0.27775 * 6 5 4 28 28 H 1.09005 * 109.46758 * 89.99935 * 1 2 3 29 29 H 1.08998 * 109.47294 * 209.99965 * 1 2 3 30 30 H 1.09003 * 109.46502 * 330.00278 * 1 2 3 31 31 H 1.08003 * 120.80092 * 0.02562 * 3 2 1 32 32 H 1.08005 * 120.44605 * 180.02562 * 4 3 2 33 33 H 0.96995 * 120.00050 * 34.72200 * 9 7 6 34 34 H 1.09000 * 109.46873 * 300.00475 * 13 10 9 35 35 H 1.09004 * 109.46684 * 59.99917 * 13 10 9 36 36 H 1.09002 * 109.47112 * 300.00009 * 14 13 10 37 37 H 1.08998 * 109.46926 * 60.00162 * 14 13 10 38 38 H 1.09002 * 109.47138 * 299.99737 * 15 14 13 39 39 H 1.08998 * 109.47509 * 60.00264 * 15 14 13 40 40 H 0.97003 * 119.99964 * 179.97438 * 19 18 16 41 41 H 1.08999 * 115.55776 * 274.41864 * 24 7 6 42 42 H 1.09000 * 117.49677 * 0.02562 * 25 24 7 43 43 H 1.09007 * 117.49874 * 145.02018 * 25 24 7 44 44 H 1.08997 * 117.50003 * 214.98024 * 26 24 7 45 45 H 1.08994 * 117.49322 * 359.97438 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2095 1.1949 0.0000 4 6 3.5944 1.1453 0.0005 5 7 4.1964 -0.0334 0.0005 6 6 3.4956 -1.1493 0.0005 7 6 4.2204 -2.4706 0.0011 8 1 3.5250 -3.2666 -0.2650 9 7 5.3120 -2.4291 -0.9752 10 16 5.7090 -3.7898 -1.8315 11 8 6.8038 -3.3863 -2.6427 12 8 5.8638 -4.7954 -0.8396 13 6 4.2482 -4.1237 -2.8538 14 6 4.4943 -5.3727 -3.7025 15 6 3.2623 -5.6538 -4.5652 16 6 3.5049 -6.8837 -5.4016 17 1 4.4437 -7.4122 -5.3251 18 6 2.5280 -7.3349 -6.2636 19 7 2.7396 -8.4085 -6.9932 20 14 0.9041 -6.4212 -6.3953 21 1 1.0055 -5.3810 -7.4504 22 1 -0.1755 -7.3785 -6.7463 23 1 0.5913 -5.7776 -5.0942 24 6 4.7926 -2.7378 1.3946 25 6 4.4813 -4.0903 2.0387 26 6 3.8046 -2.8201 2.5601 27 7 2.1775 -1.1408 -0.0049 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3632 0.8901 0.5138 31 1 1.6901 2.1418 0.0004 32 1 4.1747 2.0563 0.0010 33 1 5.7995 -1.6037 -1.1229 34 1 3.3837 -4.2857 -2.2101 35 1 4.0599 -3.2719 -3.5075 36 1 5.3588 -5.2101 -4.3462 37 1 4.6829 -6.2245 -3.0491 38 1 2.3976 -5.8163 -3.9218 39 1 3.0742 -4.8019 -5.2186 40 1 2.0521 -8.7261 -7.5994 41 1 5.7701 -2.2988 1.5937 42 1 3.8692 -4.7899 1.4694 43 1 5.2540 -4.5409 2.6617 44 1 4.1323 -2.4355 3.5259 45 1 2.7472 -2.6835 2.3339 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349451077.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:35 Heat of formation + Delta-G solvation = -8.647677 kcal Electronic energy + Delta-G solvation = -27416.902300 eV Core-core repulsion = 23562.370394 eV Total energy + Delta-G solvation = -3854.531906 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.56781 -38.26496 -36.85295 -35.76289 -35.09146 -34.80283 -34.38647 -32.71267 -32.20612 -28.98381 -28.37489 -27.36342 -23.99872 -23.61943 -23.10317 -22.38452 -20.70789 -20.52244 -19.36516 -18.11736 -17.58907 -17.05542 -16.84103 -16.43641 -15.92674 -15.82778 -15.50612 -15.39961 -14.69296 -14.50073 -14.21520 -14.17582 -13.62217 -13.40149 -13.24935 -12.92062 -12.77322 -12.39768 -12.25398 -12.12470 -11.94125 -11.88605 -11.81448 -11.61098 -11.55693 -11.42343 -10.98098 -10.94290 -10.91701 -10.62319 -10.27730 -10.09003 -9.99903 -9.84977 -9.79062 -9.61976 -9.40682 -9.24161 -8.57836 -6.07543 -4.06621 0.34045 0.51205 0.69574 2.68616 3.18768 3.27087 3.34589 3.35537 3.37174 3.70971 3.78188 3.93387 4.07763 4.32317 4.41231 4.49912 4.51753 4.61095 4.67561 4.77129 4.86571 4.97084 5.01206 5.06235 5.09549 5.10967 5.20377 5.26436 5.32741 5.50163 5.51662 5.64950 5.76785 5.84763 5.97935 6.01636 6.10341 6.15404 6.27881 6.63899 6.68185 6.86665 7.14147 7.28035 7.71967 7.72067 8.48692 8.97032 9.53736 11.05782 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010468 B = 0.003451 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2674.262261 B = 8110.941085 C = 9510.066136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.180 3.820 3 C -0.232 4.232 4 C 0.153 3.847 5 N -0.510 5.510 6 C 0.327 3.673 7 C 0.258 3.742 8 H 0.110 0.890 9 N -1.110 6.110 10 S 2.600 3.400 11 O -0.957 6.957 12 O -0.946 6.946 13 C -0.619 4.619 14 C -0.096 4.096 15 C -0.005 4.005 16 C -0.526 4.526 17 H 0.075 0.925 18 C 0.068 3.932 19 N -0.900 5.900 20 Si 0.879 3.121 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.266 1.266 24 C -0.163 4.163 25 C -0.152 4.152 26 C -0.182 4.182 27 N -0.511 5.511 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.148 0.852 32 H 0.170 0.830 33 H 0.422 0.578 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.020 0.980 39 H 0.015 0.985 40 H 0.264 0.736 41 H 0.117 0.883 42 H 0.102 0.898 43 H 0.100 0.900 44 H 0.093 0.907 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.720 22.243 19.852 29.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.033 3.967 3 C -0.254 4.254 4 C -0.012 4.012 5 N -0.225 5.225 6 C 0.058 3.942 7 C 0.148 3.852 8 H 0.127 0.873 9 N -0.867 5.867 10 S 2.695 3.305 11 O -0.948 6.948 12 O -0.936 6.936 13 C -0.751 4.751 14 C -0.135 4.135 15 C -0.043 4.043 16 C -0.564 4.564 17 H 0.093 0.907 18 C -0.134 4.134 19 N -0.539 5.539 20 Si 0.706 3.294 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.190 1.190 24 C -0.184 4.184 25 C -0.189 4.189 26 C -0.219 4.219 27 N -0.226 5.226 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.165 0.835 32 H 0.187 0.813 33 H 0.258 0.742 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.039 0.961 39 H 0.033 0.967 40 H 0.074 0.926 41 H 0.135 0.865 42 H 0.121 0.879 43 H 0.118 0.882 44 H 0.112 0.888 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.581 20.639 19.806 28.648 hybrid contribution -1.832 2.025 -0.511 2.778 sum -3.413 22.664 19.295 29.960 Atomic orbital electron populations 1.20830 0.87577 1.04213 1.04035 1.21786 0.97728 0.88053 0.89102 1.22781 0.96676 1.00556 1.05360 1.23263 0.92191 0.96107 0.89686 1.68068 1.41751 0.98619 1.14044 1.23018 0.86581 0.94261 0.90386 1.18804 0.86555 0.91109 0.88705 0.87268 1.55826 1.46515 1.31039 1.53340 1.05414 0.76812 0.73305 0.74956 1.93595 1.49500 1.81359 1.70313 1.93602 1.85336 1.57757 1.56907 1.30650 1.20280 1.09722 1.14406 1.21305 1.02500 0.91928 0.97803 1.19532 0.92718 0.97332 0.94733 1.21139 1.03416 1.09815 1.22064 0.90678 1.25015 0.98451 0.94778 0.95118 1.69911 1.34592 1.23399 1.25994 0.86791 0.83843 0.79860 0.78879 1.20262 1.21234 1.19027 1.22570 1.00779 1.03419 0.91593 1.23020 1.02931 0.90252 1.02672 1.23020 0.98291 1.03123 0.97514 1.68065 1.09249 1.30758 1.14569 0.89375 0.89642 0.90038 0.83450 0.81252 0.74222 0.85524 0.85454 0.90990 0.90804 0.96133 0.96694 0.92634 0.86526 0.87932 0.88202 0.88816 0.88619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.60 10.22 36.01 0.37 -0.23 16 2 C 0.18 1.51 6.82 -82.24 -0.56 0.95 16 3 C -0.23 -1.52 9.86 -39.32 -0.39 -1.91 16 4 C 0.15 1.14 11.30 -17.20 -0.19 0.95 16 5 N -0.51 -5.25 9.65 -10.73 -0.10 -5.35 16 6 C 0.33 3.66 6.25 -157.20 -0.98 2.68 16 7 C 0.26 2.96 2.70 -69.08 -0.19 2.78 16 8 H 0.11 1.21 6.88 -51.93 -0.36 0.85 16 9 N -1.11 -13.25 5.35 -5.88 -0.03 -13.28 16 10 S 2.60 38.40 5.38 -107.50 -0.58 37.82 16 11 O -0.96 -17.00 18.08 -57.54 -1.04 -18.04 16 12 O -0.95 -15.83 17.82 -57.54 -1.03 -16.85 16 13 C -0.62 -9.38 5.96 37.16 0.22 -9.16 16 14 C -0.10 -1.90 5.16 -26.73 -0.14 -2.04 16 15 C 0.00 -0.11 4.04 -27.88 -0.11 -0.22 16 16 C -0.53 -15.10 9.66 -34.44 -0.33 -15.43 16 17 H 0.08 2.30 7.99 -52.48 -0.42 1.88 16 18 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 19 N -0.90 -27.84 13.96 55.43 0.77 -27.07 16 20 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 24 C -0.16 -1.77 5.44 -90.62 -0.49 -2.26 16 25 C -0.15 -1.60 10.18 -26.69 -0.27 -1.87 16 26 C -0.18 -1.71 9.87 -26.69 -0.26 -1.98 16 27 N -0.51 -5.58 10.26 -6.99 -0.07 -5.66 16 28 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.26 8.10 -51.93 -0.42 -0.16 16 31 H 0.15 0.50 8.06 -52.48 -0.42 0.07 16 32 H 0.17 0.70 8.06 -52.48 -0.42 0.27 16 33 H 0.42 4.63 8.23 -34.47 -0.28 4.35 16 34 H 0.13 1.68 7.44 -51.92 -0.39 1.29 16 35 H 0.13 1.73 8.14 -51.92 -0.42 1.31 16 36 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 37 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.02 0.48 7.20 -51.93 -0.37 0.10 16 39 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 40 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 41 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.10 1.12 8.05 -51.93 -0.42 0.70 16 43 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 44 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 390.81 15.07 5.89 5.89 Total: -1.00 -36.72 390.81 -11.16 -47.88 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -6.87 Total: 3.60 kcal Atomic # 6 Polarization: -22.43 SS G_CDS: -3.43 Total: -25.86 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: 0.57 Total: -51.36 kcal Atomic # 8 Polarization: -32.83 SS G_CDS: -2.07 Total: -34.89 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Atomic # 16 Polarization: 38.40 SS G_CDS: -0.58 Total: 37.82 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.72 -11.16 -47.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349451077.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.234 kcal (2) G-P(sol) polarization free energy of solvation -36.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds