Wall clock time and date at job start Sat Apr 11 2020 05:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38612 * 120.45180 * 2 1 4 4 C 1.38580 * 118.40073 * 179.97438 * 3 2 1 5 5 N 1.32353 * 119.10337 * 0.02562 * 4 3 2 6 6 C 1.31773 * 120.82052 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.12470 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.47243 * 194.99948 * 7 6 5 9 9 N 1.46506 * 109.46937 * 315.00299 * 7 6 5 10 10 S 1.65597 * 119.99791 * 215.00116 * 9 7 6 11 11 O 1.42101 * 104.27612 * 181.07220 * 10 9 7 12 12 O 1.42101 * 104.27805 * 308.92463 * 10 9 7 13 13 C 1.81397 * 104.45432 * 64.99519 * 10 9 7 14 14 C 1.52999 * 109.47238 * 179.97438 * 13 10 9 15 15 C 1.53004 * 109.46697 * 180.02562 * 14 13 10 16 16 C 1.50700 * 109.46889 * 179.97438 * 15 14 13 17 17 H 1.08008 * 119.99751 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00174 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99918 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 119.99885 * 0.02562 * 18 16 15 21 21 H 1.48511 * 109.46903 * 89.99625 * 20 18 16 22 22 H 1.48493 * 109.47345 * 209.99373 * 20 18 16 23 23 H 1.48498 * 109.47461 * 329.99956 * 20 18 16 24 24 C 1.52997 * 109.47095 * 74.99641 * 7 6 5 25 25 C 1.53002 * 117.49786 * 128.74723 * 24 7 6 26 26 C 1.53009 * 117.49795 * 60.09069 * 24 7 6 27 27 N 1.31811 * 121.75694 * 0.27775 * 6 5 4 28 28 H 1.09005 * 109.46758 * 89.99935 * 1 2 3 29 29 H 1.08998 * 109.47294 * 209.99965 * 1 2 3 30 30 H 1.09003 * 109.46502 * 330.00278 * 1 2 3 31 31 H 1.08003 * 120.80092 * 0.02562 * 3 2 1 32 32 H 1.08005 * 120.44605 * 180.02562 * 4 3 2 33 33 H 0.96995 * 120.00050 * 34.72200 * 9 7 6 34 34 H 1.09000 * 109.46873 * 300.00475 * 13 10 9 35 35 H 1.09004 * 109.46684 * 59.99917 * 13 10 9 36 36 H 1.09002 * 109.47112 * 300.00009 * 14 13 10 37 37 H 1.08998 * 109.46926 * 60.00162 * 14 13 10 38 38 H 1.09002 * 109.47138 * 299.99737 * 15 14 13 39 39 H 1.08998 * 109.47509 * 60.00264 * 15 14 13 40 40 H 0.97003 * 119.99964 * 179.97438 * 19 18 16 41 41 H 1.08999 * 115.55776 * 274.41864 * 24 7 6 42 42 H 1.09000 * 117.49677 * 0.02562 * 25 24 7 43 43 H 1.09007 * 117.49874 * 145.02018 * 25 24 7 44 44 H 1.08997 * 117.50003 * 214.98024 * 26 24 7 45 45 H 1.08994 * 117.49322 * 359.97438 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2095 1.1949 0.0000 4 6 3.5944 1.1453 0.0005 5 7 4.1964 -0.0334 0.0005 6 6 3.4956 -1.1493 0.0005 7 6 4.2204 -2.4706 0.0011 8 1 3.5250 -3.2666 -0.2650 9 7 5.3120 -2.4291 -0.9752 10 16 5.7090 -3.7898 -1.8315 11 8 6.8038 -3.3863 -2.6427 12 8 5.8638 -4.7954 -0.8396 13 6 4.2482 -4.1237 -2.8538 14 6 4.4943 -5.3727 -3.7025 15 6 3.2623 -5.6538 -4.5652 16 6 3.5049 -6.8837 -5.4016 17 1 4.4437 -7.4122 -5.3251 18 6 2.5280 -7.3349 -6.2636 19 7 2.7396 -8.4085 -6.9932 20 14 0.9041 -6.4212 -6.3953 21 1 1.0055 -5.3810 -7.4504 22 1 -0.1755 -7.3785 -6.7463 23 1 0.5913 -5.7776 -5.0942 24 6 4.7926 -2.7378 1.3946 25 6 4.4813 -4.0903 2.0387 26 6 3.8046 -2.8201 2.5601 27 7 2.1775 -1.1408 -0.0049 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3632 0.8901 0.5138 31 1 1.6901 2.1418 0.0004 32 1 4.1747 2.0563 0.0010 33 1 5.7995 -1.6037 -1.1229 34 1 3.3837 -4.2857 -2.2101 35 1 4.0599 -3.2719 -3.5075 36 1 5.3588 -5.2101 -4.3462 37 1 4.6829 -6.2245 -3.0491 38 1 2.3976 -5.8163 -3.9218 39 1 3.0742 -4.8019 -5.2186 40 1 2.0521 -8.7261 -7.5994 41 1 5.7701 -2.2988 1.5937 42 1 3.8692 -4.7899 1.4694 43 1 5.2540 -4.5409 2.6617 44 1 4.1323 -2.4355 3.5259 45 1 2.7472 -2.6835 2.3339 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349451077.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:34 Heat of formation + Delta-G solvation = -35.446656 kcal Electronic energy + Delta-G solvation = -27418.064391 eV Core-core repulsion = 23562.370394 eV Total energy + Delta-G solvation = -3855.693997 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.18800 -39.08060 -38.13570 -37.06602 -36.54091 -35.83087 -35.08967 -34.27277 -33.36593 -30.20147 -29.47494 -28.15731 -25.44131 -24.58838 -23.75553 -23.16155 -22.29249 -21.51010 -20.50078 -19.08203 -18.95393 -18.39429 -17.98059 -17.25255 -17.11481 -16.77368 -16.35580 -16.22542 -16.13741 -15.78705 -15.27876 -15.16721 -14.88382 -14.15191 -14.10128 -14.07162 -13.88172 -13.68989 -13.33341 -13.27351 -13.18812 -13.13649 -13.09940 -12.91519 -12.72521 -12.59183 -12.39147 -12.05186 -11.86653 -11.67467 -11.56859 -11.47931 -11.41857 -11.32494 -11.04591 -10.78862 -10.61246 -10.34556 -10.24491 -8.31048 -6.36846 -0.83445 -0.12734 0.13002 1.34841 1.37333 1.49130 1.62162 2.34892 2.46833 2.64223 2.79000 3.03843 3.04445 3.10171 3.22382 3.60295 3.62799 3.71792 3.73773 3.87182 3.97303 4.05803 4.16234 4.19510 4.27546 4.31282 4.45743 4.56177 4.63522 4.69351 4.74970 4.77696 4.78817 4.92955 4.95886 5.04245 5.11652 5.23530 5.26519 5.30942 5.42805 5.48620 5.60711 5.94578 6.07356 6.24089 6.71035 7.08977 7.27738 8.85921 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010468 B = 0.003451 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2674.262261 B = 8110.941085 C = 9510.066136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.160 3.840 3 C -0.218 4.218 4 C 0.142 3.858 5 N -0.529 5.529 6 C 0.311 3.689 7 C 0.253 3.747 8 H 0.109 0.891 9 N -1.097 6.097 10 S 2.624 3.376 11 O -0.989 6.989 12 O -0.968 6.968 13 C -0.615 4.615 14 C -0.101 4.101 15 C -0.005 4.005 16 C -0.544 4.544 17 H 0.032 0.968 18 C 0.003 3.997 19 N -0.951 5.951 20 Si 0.952 3.048 21 H -0.265 1.265 22 H -0.283 1.283 23 H -0.241 1.241 24 C -0.172 4.172 25 C -0.164 4.164 26 C -0.163 4.163 27 N -0.534 5.534 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.108 0.892 31 H 0.184 0.816 32 H 0.201 0.799 33 H 0.428 0.572 34 H 0.150 0.850 35 H 0.148 0.852 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.032 0.968 39 H 0.027 0.973 40 H 0.267 0.733 41 H 0.115 0.885 42 H 0.096 0.904 43 H 0.103 0.897 44 H 0.107 0.893 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.935 25.732 21.144 33.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.014 3.986 3 C -0.239 4.239 4 C -0.022 4.022 5 N -0.244 5.244 6 C 0.041 3.959 7 C 0.143 3.857 8 H 0.127 0.873 9 N -0.856 5.856 10 S 2.719 3.281 11 O -0.979 6.979 12 O -0.957 6.957 13 C -0.746 4.746 14 C -0.140 4.140 15 C -0.043 4.043 16 C -0.582 4.582 17 H 0.050 0.950 18 C -0.194 4.194 19 N -0.591 5.591 20 Si 0.775 3.225 21 H -0.190 1.190 22 H -0.208 1.208 23 H -0.164 1.164 24 C -0.193 4.193 25 C -0.201 4.201 26 C -0.201 4.201 27 N -0.250 5.250 28 H 0.110 0.890 29 H 0.095 0.905 30 H 0.126 0.874 31 H 0.201 0.799 32 H 0.218 0.782 33 H 0.265 0.735 34 H 0.168 0.832 35 H 0.166 0.834 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.050 0.950 39 H 0.046 0.954 40 H 0.076 0.924 41 H 0.133 0.867 42 H 0.114 0.886 43 H 0.121 0.879 44 H 0.125 0.875 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.784 24.146 21.113 32.297 hybrid contribution -1.101 0.969 -0.880 1.711 sum -4.885 25.116 20.233 32.619 Atomic orbital electron populations 1.20908 0.85789 1.05158 1.04492 1.22356 0.99042 0.88136 0.89033 1.23170 0.96386 1.01412 1.02927 1.23889 0.93201 0.96208 0.88936 1.68049 1.42364 0.99311 1.14713 1.22779 0.86888 0.94183 0.92092 1.18895 0.86239 0.92014 0.88519 0.87297 1.55444 1.46942 1.30300 1.52939 1.04512 0.76064 0.73218 0.74340 1.93550 1.51129 1.81975 1.71243 1.93573 1.85603 1.59071 1.57491 1.30564 1.21467 1.08080 1.14512 1.21172 1.00678 0.94228 0.97944 1.19500 0.94732 0.95240 0.94867 1.21539 1.01979 1.11511 1.23139 0.94950 1.26072 1.03084 0.95696 0.94528 1.70077 1.36334 1.25528 1.27172 0.85630 0.78047 0.78632 0.80206 1.19027 1.20836 1.16430 1.22575 1.01180 1.03540 0.91968 1.23072 1.03397 0.90480 1.03133 1.23006 0.97889 1.01707 0.97487 1.68029 1.09209 1.32336 1.15457 0.89011 0.90467 0.87373 0.79864 0.78183 0.73499 0.83232 0.83394 0.91781 0.91290 0.95006 0.95445 0.92376 0.86730 0.88600 0.87869 0.87477 0.88753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.22 71.24 0.73 -0.14 16 2 C 0.16 2.27 6.82 42.57 0.29 2.56 16 3 C -0.22 -2.09 9.86 22.44 0.22 -1.87 16 4 C 0.14 1.70 11.30 84.70 0.96 2.66 16 5 N -0.53 -9.89 9.65 -187.85 -1.81 -11.70 16 6 C 0.31 6.49 6.25 138.75 0.87 7.35 16 7 C 0.25 5.56 2.70 44.24 0.12 5.68 16 8 H 0.11 2.32 6.88 -2.39 -0.02 2.31 16 9 N -1.10 -25.23 5.35 -172.52 -0.92 -26.15 16 10 S 2.62 76.36 5.38 -56.49 -0.30 76.05 16 11 O -0.99 -35.06 18.08 -127.65 -2.31 -37.37 16 12 O -0.97 -32.40 17.82 -127.65 -2.27 -34.67 16 13 C -0.62 -17.73 5.96 71.98 0.43 -17.30 16 14 C -0.10 -3.99 5.16 30.60 0.16 -3.83 16 15 C 0.00 -0.22 4.04 29.85 0.12 -0.10 16 16 C -0.54 -31.93 9.66 25.60 0.25 -31.68 16 17 H 0.03 2.09 7.99 -2.91 -0.02 2.07 16 18 C 0.00 0.18 5.47 84.66 0.46 0.64 16 19 N -0.95 -60.39 13.96 21.45 0.30 -60.09 16 20 Si 0.95 43.80 27.47 68.60 1.88 45.68 16 21 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 22 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 23 H -0.24 -10.06 6.54 99.48 0.65 -9.41 16 24 C -0.17 -3.60 5.44 -10.79 -0.06 -3.66 16 25 C -0.16 -3.38 10.18 30.62 0.31 -3.07 16 26 C -0.16 -2.89 9.87 30.62 0.30 -2.59 16 27 N -0.53 -10.75 10.26 -176.02 -1.81 -12.56 16 28 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.11 0.27 8.10 -2.39 -0.02 0.25 16 31 H 0.18 0.32 8.06 -2.91 -0.02 0.30 16 32 H 0.20 0.92 8.06 -2.91 -0.02 0.89 16 33 H 0.43 9.02 8.23 -96.75 -0.80 8.23 16 34 H 0.15 3.63 7.44 -2.39 -0.02 3.61 16 35 H 0.15 3.67 8.14 -2.39 -0.02 3.65 16 36 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 37 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 38 H 0.03 1.40 7.20 -2.39 -0.02 1.39 16 39 H 0.03 1.20 7.57 -2.39 -0.02 1.19 16 40 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 41 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 42 H 0.10 2.08 8.05 -2.39 -0.02 2.06 16 43 H 0.10 2.01 8.14 -2.38 -0.02 1.99 16 44 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -81.37 390.81 -1.94 -83.31 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: 0.14 Total: 22.85 kcal Atomic # 6 Polarization: -50.51 SS G_CDS: 5.16 Total: -45.36 kcal Atomic # 7 Polarization: -106.25 SS G_CDS: -4.24 Total: -110.50 kcal Atomic # 8 Polarization: -67.46 SS G_CDS: -4.58 Total: -72.04 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.88 Total: 45.68 kcal Atomic # 16 Polarization: 76.36 SS G_CDS: -0.30 Total: 76.05 kcal Total: -81.37 -1.94 -83.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349451077.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.867 kcal (2) G-P(sol) polarization free energy of solvation -81.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds