Wall clock time and date at job start Sat Apr 11 2020 05:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99816 * 2 1 4 4 H 1.48500 * 109.47264 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47361 * 300.00417 * 3 2 1 6 6 H 1.48508 * 109.46860 * 60.00119 * 3 2 1 7 7 C 1.37878 * 120.00437 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00352 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99810 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46994 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46891 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.46947 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.47238 * 179.97438 * 12 11 10 14 14 N 1.31128 * 126.54788 * 89.99940 * 13 12 11 15 15 C 1.34491 * 105.61248 * 180.02562 * 14 13 12 16 16 C 1.50706 * 126.28604 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.46764 * 90.00329 * 16 15 14 18 18 O 1.21278 * 120.00047 * 0.02562 * 17 16 15 19 19 N 1.34778 * 119.99883 * 179.97438 * 17 16 15 20 20 C 1.46372 * 119.64654 * 359.73034 * 19 17 16 21 21 C 1.53760 * 109.20693 * 114.91119 * 20 19 17 22 22 S 1.81738 * 108.75117 * 57.82943 * 21 20 19 23 23 C 1.81739 * 102.30988 * 305.34645 * 22 21 20 24 24 C 1.46374 * 119.64630 * 180.02562 * 19 17 16 25 25 N 1.29946 * 107.42970 * 0.02562 * 15 14 13 26 26 O 1.21309 * 110.24521 * 359.70291 * 25 15 14 27 27 H 0.96999 * 120.00397 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.46836 * 59.99719 * 9 7 2 29 29 H 1.09001 * 109.46547 * 300.00073 * 9 7 2 30 30 H 1.08992 * 109.47056 * 59.99637 * 10 9 7 31 31 H 1.08996 * 109.46698 * 299.99753 * 10 9 7 32 32 H 1.09001 * 109.47372 * 59.99964 * 11 10 9 33 33 H 1.09004 * 109.47108 * 299.99708 * 11 10 9 34 34 H 1.09001 * 109.46832 * 59.99979 * 12 11 10 35 35 H 1.09000 * 109.47611 * 300.00276 * 12 11 10 36 36 H 1.08996 * 109.47178 * 210.00408 * 16 15 14 37 37 H 1.08999 * 109.47523 * 330.00517 * 16 15 14 38 38 H 1.09000 * 109.47075 * 234.91909 * 20 19 17 39 39 H 1.08996 * 109.47070 * 354.90575 * 20 19 17 40 40 H 1.08999 * 109.69328 * 297.99674 * 21 20 19 41 41 H 1.08996 * 109.51067 * 177.55735 * 21 20 19 42 42 H 1.08995 * 109.58548 * 294.75102 * 23 22 21 43 43 H 1.09000 * 109.69686 * 174.40347 * 23 22 21 44 44 H 1.08997 * 109.47129 * 5.09091 * 24 19 17 45 45 H 1.09000 * 109.47157 * 125.08402 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2455 -3.6621 -0.0005 11 6 1.4805 -4.9871 0.0001 12 6 2.4748 -6.1499 -0.0005 13 6 1.7214 -7.4551 0.0007 14 7 1.3299 -8.1318 -1.0520 15 6 0.7019 -9.2192 -0.5704 16 6 0.0678 -10.3170 -1.3853 17 6 1.0869 -11.3935 -1.6569 18 8 2.2166 -11.2806 -1.2303 19 7 0.7426 -12.4822 -2.3729 20 6 -0.6249 -12.6139 -2.8779 21 6 -0.6022 -12.5780 -4.4149 22 16 0.4688 -13.9181 -5.0148 23 6 2.0258 -13.5928 -4.1356 24 6 1.7384 -13.5233 -2.6316 25 7 0.7423 -9.1495 0.7265 26 8 1.3285 -8.1462 1.0750 27 1 -0.4851 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6249 -2.5571 0.8897 30 1 2.8721 -3.6042 0.8894 31 1 2.8720 -3.6042 -0.8905 32 1 0.8536 -5.0451 -0.8896 33 1 0.8542 -5.0446 0.8904 34 1 3.1021 -6.0920 0.8890 35 1 3.1009 -6.0922 -0.8909 36 1 -0.7706 -10.7414 -0.8331 37 1 -0.2893 -9.9081 -2.3304 38 1 -1.0474 -13.5602 -2.5403 39 1 -1.2320 -11.7904 -2.5018 40 1 -0.2116 -11.6186 -4.7542 41 1 -1.6130 -12.7191 -4.7974 42 1 2.4440 -12.6441 -4.4720 43 1 2.7352 -14.3960 -4.3353 44 1 2.6581 -13.2874 -2.0964 45 1 1.3558 -14.4851 -2.2899 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350256850.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:37 Heat of formation + Delta-G solvation = 16.657904 kcal Electronic energy + Delta-G solvation = -25966.811731 eV Core-core repulsion = 22113.377157 eV Total energy + Delta-G solvation = -3853.434574 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.59314 -40.69642 -37.11074 -36.22433 -35.64772 -33.63196 -32.84906 -32.10354 -31.09071 -29.83708 -29.20480 -25.79419 -24.57284 -24.25276 -23.52250 -22.60058 -21.29917 -20.19084 -19.91407 -18.48328 -17.77116 -17.49036 -16.76740 -16.65851 -16.22519 -15.91778 -15.24846 -15.05133 -15.01851 -14.64471 -14.44449 -14.36121 -14.08323 -13.90788 -13.46769 -13.07634 -13.01422 -12.87678 -12.69868 -12.35253 -12.16338 -12.08776 -11.72113 -11.67326 -11.58407 -11.08945 -11.02517 -10.66564 -10.58888 -10.55659 -10.46204 -10.39313 -9.93290 -9.71722 -9.57102 -9.31395 -9.04025 -8.35445 -8.26897 -6.00301 -4.02650 1.08722 1.13682 1.87169 1.96551 2.00010 2.41258 2.84256 3.30983 3.38382 3.38812 3.42613 3.82931 3.86299 3.98013 4.24820 4.34559 4.43253 4.45719 4.51567 4.58391 4.71202 4.76644 4.85685 5.06669 5.08000 5.12933 5.22953 5.24064 5.24282 5.35795 5.48706 5.75611 5.80609 5.87258 6.02708 6.07275 6.34822 6.58193 6.67851 6.82857 7.09951 7.51088 7.67583 7.81133 7.99915 8.12567 8.42017 9.05012 9.61633 11.11058 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022116 B = 0.001636 C = 0.001592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.764913 B =17107.602737 C =17586.303760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.019 3.981 10 C -0.109 4.109 11 C -0.115 4.115 12 C -0.031 4.031 13 C 0.204 3.796 14 N -0.480 5.480 15 C 0.180 3.820 16 C -0.047 4.047 17 C 0.525 3.475 18 O -0.519 6.519 19 N -0.619 5.619 20 C 0.103 3.897 21 C -0.106 4.106 22 S -0.253 6.253 23 C -0.101 4.101 24 C 0.111 3.889 25 N -0.379 5.379 26 O 0.080 5.920 27 H 0.260 0.740 28 H 0.016 0.984 29 H 0.016 0.984 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.123 0.877 37 H 0.127 0.873 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.121 0.879 42 H 0.089 0.911 43 H 0.118 0.882 44 H 0.107 0.893 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.544 -31.103 -7.009 31.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.074 0.926 9 C -0.018 4.018 10 C -0.147 4.147 11 C -0.153 4.153 12 C -0.070 4.070 13 C -0.016 4.016 14 N -0.213 5.213 15 C -0.094 4.094 16 C -0.089 4.089 17 C 0.311 3.689 18 O -0.393 6.393 19 N -0.354 5.354 20 C -0.022 4.022 21 C -0.255 4.255 22 S -0.026 6.026 23 C -0.250 4.250 24 C -0.013 4.013 25 N -0.086 5.086 26 O 0.020 5.980 27 H 0.069 0.931 28 H 0.034 0.966 29 H 0.035 0.965 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.120 0.880 35 H 0.127 0.873 36 H 0.141 0.859 37 H 0.145 0.855 38 H 0.109 0.891 39 H 0.118 0.882 40 H 0.110 0.890 41 H 0.139 0.861 42 H 0.108 0.892 43 H 0.136 0.864 44 H 0.125 0.875 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.713 -32.451 -7.433 33.336 hybrid contribution 0.628 1.966 0.667 2.169 sum -1.085 -30.485 -6.766 31.246 Atomic orbital electron populations 1.69974 1.06066 1.26473 1.51012 1.25038 0.94849 0.99303 0.95381 0.86548 0.80130 0.83831 0.77556 1.19718 1.21051 1.21044 1.21306 0.93109 0.91076 1.50348 0.92558 1.19111 0.94041 0.91318 0.97315 1.21634 0.99184 0.93045 1.00789 1.21734 0.97496 0.93323 1.02784 1.20558 0.97184 0.83396 1.05900 1.29094 0.95416 0.97115 0.79978 1.71845 1.15436 1.04978 1.29064 1.24703 1.00193 0.96156 0.88332 1.19883 0.97428 0.90390 1.01156 1.20332 0.88888 0.82003 0.77639 1.90761 1.21214 1.77283 1.50024 1.47894 1.11982 1.20983 1.54580 1.22018 0.82814 1.04785 0.92544 1.23985 1.03032 1.00397 0.98078 1.87025 1.11618 1.41349 1.62647 1.23886 0.97177 1.06649 0.97287 1.21669 0.94135 0.91225 0.94288 1.74556 1.15145 1.03623 1.15304 1.85285 1.51878 1.24870 1.35945 0.93079 0.96563 0.96544 0.92871 0.92903 0.91490 0.91616 0.87988 0.87263 0.85909 0.85507 0.89050 0.88164 0.89021 0.86129 0.89243 0.86376 0.87523 0.89617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.81 13.29 55.43 0.74 -26.08 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.48 4.97 -27.88 -0.14 0.34 16 10 C -0.11 -2.06 5.15 -26.73 -0.14 -2.20 16 11 C -0.11 -1.78 5.20 -26.73 -0.14 -1.91 16 12 C -0.03 -0.39 5.84 -27.88 -0.16 -0.56 16 13 C 0.20 2.90 7.77 -13.05 -0.10 2.80 16 14 N -0.48 -7.19 11.55 -9.87 -0.11 -7.30 16 15 C 0.18 2.45 6.71 -156.37 -1.05 1.40 16 16 C -0.05 -0.42 4.63 -29.03 -0.13 -0.55 16 17 C 0.52 5.30 7.66 -10.98 -0.08 5.21 16 18 O -0.52 -7.58 15.33 5.56 0.09 -7.49 16 19 N -0.62 -4.22 2.78 -173.25 -0.48 -4.71 16 20 C 0.10 0.38 6.17 -3.72 -0.02 0.36 16 21 C -0.11 -0.44 6.68 37.55 0.25 -0.18 16 22 S -0.25 -1.60 22.29 -107.50 -2.40 -3.99 16 23 C -0.10 -0.58 6.67 37.31 0.25 -0.33 16 24 C 0.11 0.70 6.22 -3.96 -0.02 0.68 16 25 N -0.38 -5.65 12.16 30.90 0.38 -5.28 16 26 O 0.08 1.18 11.31 18.11 0.20 1.38 16 27 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.12 0.72 7.66 -51.93 -0.40 0.33 16 37 H 0.13 0.81 7.88 -51.93 -0.41 0.40 16 38 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.10 0.19 5.73 -51.93 -0.30 -0.11 16 40 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.12 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.12 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.11 0.84 6.88 -51.93 -0.36 0.49 16 45 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 385.99 15.07 5.82 5.82 Total: -1.00 -35.57 385.99 -9.62 -45.19 By element: Atomic # 1 Polarization: 1.19 SS G_CDS: -6.92 Total: -5.73 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -1.91 Total: -8.29 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: 0.52 Total: -43.36 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: 0.29 Total: -6.11 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.40 Total: -3.99 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.57 -9.62 -45.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350256850.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.849 kcal (2) G-P(sol) polarization free energy of solvation -35.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds