Wall clock time and date at job start Sat Apr 11 2020 05:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99816 * 2 1 4 4 H 1.48500 * 109.47264 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47361 * 300.00417 * 3 2 1 6 6 H 1.48508 * 109.46860 * 60.00119 * 3 2 1 7 7 C 1.37878 * 120.00437 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00352 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99810 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46994 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46891 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.46947 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.47238 * 179.97438 * 12 11 10 14 14 N 1.31128 * 126.54788 * 89.99940 * 13 12 11 15 15 C 1.34491 * 105.61248 * 180.02562 * 14 13 12 16 16 C 1.50706 * 126.28604 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.46764 * 90.00329 * 16 15 14 18 18 O 1.21278 * 120.00047 * 0.02562 * 17 16 15 19 19 N 1.34778 * 119.99883 * 179.97438 * 17 16 15 20 20 C 1.46372 * 119.64654 * 359.73034 * 19 17 16 21 21 C 1.53760 * 109.20693 * 114.91119 * 20 19 17 22 22 S 1.81738 * 108.75117 * 57.82943 * 21 20 19 23 23 C 1.81739 * 102.30988 * 305.34645 * 22 21 20 24 24 C 1.46374 * 119.64630 * 180.02562 * 19 17 16 25 25 N 1.29946 * 107.42970 * 0.02562 * 15 14 13 26 26 O 1.21309 * 110.24521 * 359.70291 * 25 15 14 27 27 H 0.96999 * 120.00397 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.46836 * 59.99719 * 9 7 2 29 29 H 1.09001 * 109.46547 * 300.00073 * 9 7 2 30 30 H 1.08992 * 109.47056 * 59.99637 * 10 9 7 31 31 H 1.08996 * 109.46698 * 299.99753 * 10 9 7 32 32 H 1.09001 * 109.47372 * 59.99964 * 11 10 9 33 33 H 1.09004 * 109.47108 * 299.99708 * 11 10 9 34 34 H 1.09001 * 109.46832 * 59.99979 * 12 11 10 35 35 H 1.09000 * 109.47611 * 300.00276 * 12 11 10 36 36 H 1.08996 * 109.47178 * 210.00408 * 16 15 14 37 37 H 1.08999 * 109.47523 * 330.00517 * 16 15 14 38 38 H 1.09000 * 109.47075 * 234.91909 * 20 19 17 39 39 H 1.08996 * 109.47070 * 354.90575 * 20 19 17 40 40 H 1.08999 * 109.69328 * 297.99674 * 21 20 19 41 41 H 1.08996 * 109.51067 * 177.55735 * 21 20 19 42 42 H 1.08995 * 109.58548 * 294.75102 * 23 22 21 43 43 H 1.09000 * 109.69686 * 174.40347 * 23 22 21 44 44 H 1.08997 * 109.47129 * 5.09091 * 24 19 17 45 45 H 1.09000 * 109.47157 * 125.08402 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2455 -3.6621 -0.0005 11 6 1.4805 -4.9871 0.0001 12 6 2.4748 -6.1499 -0.0005 13 6 1.7214 -7.4551 0.0007 14 7 1.3299 -8.1318 -1.0520 15 6 0.7019 -9.2192 -0.5704 16 6 0.0678 -10.3170 -1.3853 17 6 1.0869 -11.3935 -1.6569 18 8 2.2166 -11.2806 -1.2303 19 7 0.7426 -12.4822 -2.3729 20 6 -0.6249 -12.6139 -2.8779 21 6 -0.6022 -12.5780 -4.4149 22 16 0.4688 -13.9181 -5.0148 23 6 2.0258 -13.5928 -4.1356 24 6 1.7384 -13.5233 -2.6316 25 7 0.7423 -9.1495 0.7265 26 8 1.3285 -8.1462 1.0750 27 1 -0.4851 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6249 -2.5571 0.8897 30 1 2.8721 -3.6042 0.8894 31 1 2.8720 -3.6042 -0.8905 32 1 0.8536 -5.0451 -0.8896 33 1 0.8542 -5.0446 0.8904 34 1 3.1021 -6.0920 0.8890 35 1 3.1009 -6.0922 -0.8909 36 1 -0.7706 -10.7414 -0.8331 37 1 -0.2893 -9.9081 -2.3304 38 1 -1.0474 -13.5602 -2.5403 39 1 -1.2320 -11.7904 -2.5018 40 1 -0.2116 -11.6186 -4.7542 41 1 -1.6130 -12.7191 -4.7974 42 1 2.4440 -12.6441 -4.4720 43 1 2.7352 -14.3960 -4.3353 44 1 2.6581 -13.2874 -2.0964 45 1 1.3558 -14.4851 -2.2899 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350256850.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:37 Heat of formation + Delta-G solvation = -6.650143 kcal Electronic energy + Delta-G solvation = -25967.822444 eV Core-core repulsion = 22113.377157 eV Total energy + Delta-G solvation = -3854.445286 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -46.65882 -41.38051 -37.77451 -37.42827 -36.84055 -35.23179 -33.92085 -33.16464 -31.76790 -31.01465 -30.22483 -27.49616 -25.32463 -24.82345 -24.64093 -23.84211 -22.37641 -21.78205 -20.58100 -19.35713 -18.62708 -18.52945 -18.33313 -17.33577 -17.29388 -16.62043 -16.48783 -16.35595 -16.00485 -15.52131 -15.23269 -15.09723 -14.69920 -14.66834 -14.62975 -14.22720 -13.85867 -13.74911 -13.69996 -13.50943 -13.42714 -13.23146 -12.84336 -12.79227 -12.67327 -12.35203 -12.25166 -12.15877 -12.10232 -12.07277 -11.46254 -11.35382 -11.24930 -11.11675 -10.86973 -10.75848 -10.52479 -10.14385 -8.75967 -8.17184 -6.27597 0.05915 0.66786 1.03352 1.28003 1.42205 1.42700 1.45789 1.55795 1.74240 1.79755 2.43447 2.52362 2.91924 3.16452 3.24102 3.60436 3.71371 3.83350 3.96278 4.01729 4.04440 4.05313 4.08495 4.24260 4.26950 4.30018 4.48152 4.59946 4.61275 4.65199 4.72096 4.74012 4.80255 4.83969 4.89494 4.91233 5.18062 5.25474 5.32988 5.34096 5.59462 5.82541 5.91962 5.99805 6.29115 6.82586 6.91246 7.05677 7.41816 8.94846 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022116 B = 0.001636 C = 0.001592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.764913 B =17107.602737 C =17586.303760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.964 3.036 4 H -0.260 1.260 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.540 4.540 8 H 0.064 0.936 9 C 0.018 3.982 10 C -0.096 4.096 11 C -0.103 4.103 12 C -0.021 4.021 13 C 0.202 3.798 14 N -0.500 5.500 15 C 0.179 3.821 16 C -0.049 4.049 17 C 0.523 3.477 18 O -0.574 6.574 19 N -0.611 5.611 20 C 0.098 3.902 21 C -0.097 4.097 22 S -0.284 6.284 23 C -0.091 4.091 24 C 0.110 3.890 25 N -0.399 5.399 26 O 0.068 5.932 27 H 0.262 0.738 28 H -0.011 1.011 29 H -0.009 1.009 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.127 0.873 35 H 0.122 0.878 36 H 0.156 0.844 37 H 0.154 0.846 38 H 0.108 0.892 39 H 0.126 0.874 40 H 0.086 0.914 41 H 0.143 0.857 42 H 0.074 0.926 43 H 0.130 0.870 44 H 0.087 0.913 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.518 -31.761 -7.454 32.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.789 3.211 4 H -0.183 1.183 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.578 4.578 8 H 0.082 0.918 9 C -0.019 4.019 10 C -0.134 4.134 11 C -0.142 4.142 12 C -0.060 4.060 13 C -0.018 4.018 14 N -0.234 5.234 15 C -0.095 4.095 16 C -0.089 4.089 17 C 0.311 3.689 18 O -0.453 6.453 19 N -0.344 5.344 20 C -0.025 4.025 21 C -0.246 4.246 22 S -0.058 6.058 23 C -0.240 4.240 24 C -0.014 4.014 25 N -0.109 5.109 26 O 0.012 5.988 27 H 0.071 0.929 28 H 0.007 0.993 29 H 0.010 0.990 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.145 0.855 35 H 0.140 0.860 36 H 0.173 0.827 37 H 0.171 0.829 38 H 0.126 0.874 39 H 0.144 0.856 40 H 0.105 0.895 41 H 0.161 0.839 42 H 0.093 0.907 43 H 0.148 0.852 44 H 0.105 0.895 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.701 -33.131 -7.893 34.101 hybrid contribution 0.549 2.110 0.754 2.307 sum -1.153 -31.022 -7.139 31.853 Atomic orbital electron populations 1.70108 1.07838 1.27574 1.52120 1.26003 0.95754 1.03440 0.94983 0.85415 0.79234 0.78890 0.77600 1.18347 1.20625 1.20581 1.21803 0.93765 0.92380 1.49821 0.91766 1.19064 0.94682 0.93374 0.94759 1.21424 0.97973 0.92241 1.01770 1.21493 0.97620 0.92876 1.02176 1.20504 0.96315 0.81343 1.07835 1.29329 0.95180 0.97405 0.79904 1.71863 1.16107 1.05831 1.29621 1.25495 0.99131 0.96519 0.88338 1.20196 0.97525 0.88955 1.02234 1.20565 0.88277 0.82693 0.77371 1.90740 1.23403 1.78574 1.52605 1.47979 1.13292 1.19871 1.53232 1.22321 0.81207 1.06778 0.92198 1.24061 1.03410 0.98917 0.98212 1.87141 1.12513 1.42766 1.63390 1.23797 0.97231 1.06330 0.96645 1.21703 0.93563 0.91700 0.94406 1.74536 1.16140 1.04001 1.16174 1.85255 1.52229 1.25119 1.36214 0.92921 0.99269 0.99049 0.91623 0.92068 0.92546 0.91959 0.85500 0.85980 0.82658 0.82857 0.87430 0.85641 0.89516 0.83934 0.90732 0.85190 0.89506 0.87941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.96 13.29 21.45 0.28 -56.67 16 2 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 3 Si 0.96 43.95 29.54 68.60 2.03 45.98 16 4 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 7 C -0.54 -30.17 9.11 25.60 0.23 -29.94 16 8 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 9 C 0.02 0.94 4.97 29.85 0.15 1.09 16 10 C -0.10 -3.58 5.15 30.59 0.16 -3.42 16 11 C -0.10 -3.12 5.20 30.59 0.16 -2.96 16 12 C -0.02 -0.50 5.84 29.85 0.17 -0.33 16 13 C 0.20 5.59 7.77 88.38 0.69 6.27 16 14 N -0.50 -14.61 11.55 -303.20 -3.50 -18.12 16 15 C 0.18 4.70 6.71 138.47 0.93 5.63 16 16 C -0.05 -0.75 4.63 29.10 0.13 -0.61 16 17 C 0.52 10.02 7.66 87.66 0.67 10.69 16 18 O -0.57 -17.01 15.33 -3.02 -0.05 -17.06 16 19 N -0.61 -7.36 2.78 -820.42 -2.28 -9.64 16 20 C 0.10 0.43 6.17 86.66 0.53 0.97 16 21 C -0.10 -0.56 6.68 72.24 0.48 -0.08 16 22 S -0.28 -3.21 22.29 -56.49 -1.26 -4.47 16 23 C -0.09 -1.00 6.67 72.08 0.48 -0.52 16 24 C 0.11 1.32 6.22 86.50 0.54 1.86 16 25 N -0.40 -11.69 12.16 -60.32 -0.73 -12.42 16 26 O 0.07 1.99 11.31 74.86 0.85 2.84 16 27 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 28 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 29 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 30 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 34 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.16 1.32 7.66 -2.39 -0.02 1.30 16 37 H 0.15 1.50 7.88 -2.39 -0.02 1.48 16 38 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 39 H 0.13 -0.04 5.73 -2.39 -0.01 -0.06 16 40 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.14 0.23 8.14 -2.39 -0.02 0.21 16 42 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.09 1.43 6.88 -2.39 -0.02 1.42 16 45 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -79.36 385.99 2.12 -77.25 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: 0.99 Total: 3.46 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: 5.79 Total: -11.14 kcal Atomic # 7 Polarization: -90.62 SS G_CDS: -6.23 Total: -96.85 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: 0.80 Total: -14.22 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: -3.21 SS G_CDS: -1.26 Total: -4.47 kcal Total: -79.36 2.12 -77.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350256850.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.597 kcal (2) G-P(sol) polarization free energy of solvation -79.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds