Wall clock time and date at job start Sat Apr 11 2020 05:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86801 * 120.00404 * 2 1 4 4 H 1.48502 * 109.47179 * 269.99765 * 3 2 1 5 5 H 1.48497 * 109.47114 * 29.99891 * 3 2 1 6 6 H 1.48499 * 109.47243 * 149.99728 * 3 2 1 7 7 C 1.38949 * 119.99690 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00136 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00106 * 0.02562 * 7 2 1 10 10 C 1.34776 * 119.99856 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00275 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99791 * 180.02562 * 10 9 7 13 13 N 1.46490 * 109.47089 * 179.97438 * 12 10 9 14 14 C 1.34779 * 120.00089 * 179.97438 * 13 12 10 15 15 O 1.21587 * 119.99991 * 355.50467 * 14 13 12 16 16 N 1.34778 * 120.00382 * 175.49798 * 14 13 12 17 17 C 1.40027 * 120.00314 * 185.40193 * 16 14 13 18 18 C 1.38867 * 120.07028 * 292.02749 * 17 16 14 19 19 C 1.38112 * 119.92680 * 179.81115 * 18 17 16 20 20 C 1.38284 * 120.06975 * 0.44291 * 19 18 17 21 21 C 1.38286 * 120.14206 * 359.78786 * 20 19 18 22 22 C 1.38107 * 120.06538 * 359.97438 * 21 20 19 23 23 C 1.40036 * 119.99741 * 5.41128 * 16 14 13 24 24 C 1.38867 * 120.06631 * 291.49570 * 23 16 14 25 25 C 1.38108 * 119.92735 * 179.81508 * 24 23 16 26 26 C 1.38283 * 120.07351 * 0.44133 * 25 24 23 27 27 C 1.38281 * 120.13706 * 359.78637 * 26 25 24 28 28 C 1.38116 * 120.06912 * 0.02562 * 27 26 25 29 29 H 0.97007 * 119.99701 * 0.02562 * 1 2 3 30 30 H 0.96999 * 119.99567 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.46850 * 59.99451 * 12 10 9 32 32 H 1.08994 * 109.46602 * 299.99634 * 12 10 9 33 33 H 0.97006 * 120.00500 * 359.97438 * 13 12 10 34 34 H 1.07996 * 120.03712 * 0.02562 * 18 17 16 35 35 H 1.07998 * 119.96421 * 180.18610 * 19 18 17 36 36 H 1.08002 * 119.92741 * 179.76970 * 20 19 18 37 37 H 1.08000 * 119.96685 * 179.97438 * 21 20 19 38 38 H 1.08006 * 120.03191 * 179.97438 * 22 21 20 39 39 H 1.08000 * 120.03873 * 0.02562 * 24 23 16 40 40 H 1.08006 * 119.96451 * 180.18682 * 25 24 23 41 41 H 1.07999 * 119.93268 * 179.76835 * 26 25 24 42 42 H 1.07998 * 119.96499 * 179.97438 * 27 26 25 43 43 H 1.08004 * 120.03050 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4958 2.0463 -1.4001 5 1 1.4457 2.6526 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0087 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0001 9 7 1.3232 -2.3907 -0.0016 10 6 1.9970 -3.5579 -0.0016 11 8 3.2099 -3.5580 -0.0011 12 6 1.2435 -4.8630 -0.0034 13 7 2.1953 -5.9765 -0.0036 14 6 1.7461 -7.2472 -0.0046 15 8 0.5537 -7.4705 0.0773 16 7 2.6184 -8.2704 -0.0964 17 6 2.1473 -9.5840 -0.2114 18 6 1.4908 -10.1837 0.8552 19 6 1.0239 -11.4781 0.7372 20 6 1.2177 -12.1801 -0.4384 21 6 1.8753 -11.5874 -1.5007 22 6 2.3402 -10.2916 -1.3906 23 6 3.9961 -8.0199 -0.0766 24 6 4.5996 -7.3655 -1.1425 25 6 5.9578 -7.1165 -1.1182 26 6 6.7182 -7.5261 -0.0383 27 6 6.1210 -8.1821 1.0224 28 6 4.7625 -8.4307 1.0059 29 1 -0.4850 0.8401 -0.0004 30 1 0.3532 -2.3906 -0.0016 31 1 0.6178 -4.9200 -0.8940 32 1 0.6159 -4.9213 0.8859 33 1 3.1491 -5.7993 -0.0031 34 1 1.3424 -9.6373 1.7749 35 1 0.5106 -11.9440 1.5653 36 1 0.8549 -13.1935 -0.5268 37 1 2.0254 -12.1384 -2.4174 38 1 2.8541 -9.8294 -2.2206 39 1 4.0069 -7.0486 -1.9879 40 1 6.4273 -6.6049 -1.9455 41 1 7.7808 -7.3335 -0.0235 42 1 6.7177 -8.5012 1.8642 43 1 4.2968 -8.9435 1.8345 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352538521.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:42 Heat of formation + Delta-G solvation = 5.316548 kcal Electronic energy + Delta-G solvation = -28360.146566 eV Core-core repulsion = 24370.776243 eV Total energy + Delta-G solvation = -3989.370323 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.19439 -38.92395 -38.85804 -38.05127 -35.41027 -34.48984 -33.70450 -31.39364 -31.17020 -30.99363 -30.70381 -29.11133 -27.35446 -24.60200 -23.18008 -22.87553 -22.77074 -22.19933 -20.08322 -19.62527 -18.56293 -18.17074 -17.78248 -16.60923 -16.20636 -16.10959 -15.67371 -15.09917 -14.93970 -14.81285 -14.73490 -14.45866 -14.16606 -13.93283 -13.75635 -13.59433 -13.51694 -13.47034 -12.83063 -12.73793 -12.19783 -12.03210 -11.92560 -11.63734 -11.57610 -11.48745 -11.22836 -11.12698 -10.46187 -10.33936 -10.25025 -9.69837 -9.63439 -9.10190 -9.07058 -9.03360 -8.85126 -8.62165 -8.31783 -8.09805 -6.51262 -3.93184 0.99306 1.21322 1.25508 1.27748 2.48747 3.11240 3.17773 3.21907 3.27219 3.55169 3.65460 3.74617 3.99883 4.18033 4.75941 4.80833 4.82080 4.82795 4.88154 4.95774 4.98960 5.17249 5.24151 5.27968 5.30478 5.37303 5.45275 5.62038 5.85151 5.87102 5.87835 5.97002 6.06513 6.15468 6.20986 6.26543 6.35586 6.37540 6.38883 6.50306 6.66557 6.68061 6.95746 7.04055 7.46186 7.92311 8.06089 8.45266 8.63910 9.04807 9.39431 9.87432 10.65691 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014582 B = 0.002808 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.727292 B = 9967.439333 C =11371.494775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.304 4.304 8 H 0.105 0.895 9 N -0.549 5.549 10 C 0.429 3.571 11 O -0.595 6.595 12 C 0.125 3.875 13 N -0.717 5.717 14 C 0.711 3.289 15 O -0.575 6.575 16 N -0.545 5.545 17 C 0.165 3.835 18 C -0.101 4.101 19 C -0.111 4.111 20 C -0.122 4.122 21 C -0.112 4.112 22 C -0.116 4.116 23 C 0.127 3.873 24 C -0.117 4.117 25 C -0.100 4.100 26 C -0.116 4.116 27 C -0.108 4.108 28 C -0.113 4.113 29 H 0.274 0.726 30 H 0.396 0.604 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.411 0.589 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.128 0.872 40 H 0.130 0.870 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.488 -21.805 -0.736 23.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.433 4.433 8 H 0.123 0.877 9 N -0.184 5.184 10 C 0.214 3.786 11 O -0.481 6.481 12 C -0.003 4.003 13 N -0.375 5.375 14 C 0.413 3.587 15 O -0.451 6.451 16 N -0.274 5.274 17 C 0.075 3.925 18 C -0.121 4.121 19 C -0.130 4.130 20 C -0.140 4.140 21 C -0.131 4.131 22 C -0.136 4.136 23 C 0.037 3.963 24 C -0.137 4.137 25 C -0.119 4.119 26 C -0.134 4.134 27 C -0.127 4.127 28 C -0.133 4.133 29 H 0.084 0.916 30 H 0.230 0.770 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.250 0.750 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.146 0.854 40 H 0.148 0.852 41 H 0.144 0.856 42 H 0.145 0.855 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 7.216 -21.688 -0.677 22.866 hybrid contribution 0.145 1.087 -0.001 1.096 sum 7.360 -20.601 -0.678 21.887 Atomic orbital electron populations 1.69617 1.06008 1.28507 1.49352 1.25321 0.95662 0.99910 0.96828 0.85818 0.79236 0.80526 0.78482 1.20269 1.20795 1.19322 1.19723 0.93442 0.81961 1.48219 0.87686 1.41778 1.09476 1.04400 1.62717 1.19707 0.88309 0.84920 0.85634 1.90502 1.13645 1.86777 1.57169 1.20862 0.91221 0.84917 1.03314 1.44921 1.11826 1.02947 1.77809 1.15721 0.84478 0.80431 0.78048 1.90942 1.13431 1.83685 1.57051 1.42081 1.03380 1.04306 1.77635 1.17306 0.98591 0.82929 0.93677 1.21281 0.97932 0.94780 0.98113 1.21027 0.99746 0.94081 0.98129 1.21174 0.99290 1.00031 0.93544 1.20982 0.98555 0.94546 0.98985 1.21236 1.00857 0.95206 0.96313 1.17657 0.82607 1.01198 0.94846 1.21400 0.95374 0.99478 0.97471 1.21082 0.93198 0.98768 0.98814 1.21246 1.00231 0.97981 0.93919 1.21043 0.94094 0.98841 0.98712 1.21254 0.94264 1.00725 0.97069 0.91593 0.77025 0.89875 0.89784 0.74966 0.85802 0.85663 0.85909 0.85686 0.85853 0.85438 0.85244 0.85617 0.85512 0.85729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.96 13.05 55.50 0.72 -23.23 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.57 29.55 -169.99 -5.02 15.54 16 4 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 7 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 8 H 0.11 2.97 7.16 -52.49 -0.38 2.60 16 9 N -0.55 -13.70 5.29 -10.96 -0.06 -13.75 16 10 C 0.43 9.99 7.85 -10.98 -0.09 9.90 16 11 O -0.59 -15.39 15.24 5.55 0.08 -15.30 16 12 C 0.13 2.41 6.16 -5.20 -0.03 2.38 16 13 N -0.72 -13.13 5.30 -66.42 -0.35 -13.48 16 14 C 0.71 12.72 8.06 -86.91 -0.70 12.02 16 15 O -0.57 -11.75 15.93 5.29 0.08 -11.66 16 16 N -0.55 -8.08 2.59 -62.59 -0.16 -8.24 16 17 C 0.16 2.26 4.71 -83.65 -0.39 1.87 16 18 C -0.10 -1.29 9.35 -39.39 -0.37 -1.66 16 19 C -0.11 -1.14 10.04 -39.61 -0.40 -1.54 16 20 C -0.12 -1.13 10.04 -39.55 -0.40 -1.52 16 21 C -0.11 -1.09 10.04 -39.61 -0.40 -1.49 16 22 C -0.12 -1.38 9.83 -39.40 -0.39 -1.77 16 23 C 0.13 1.69 4.27 -83.65 -0.36 1.34 16 24 C -0.12 -1.50 8.46 -39.40 -0.33 -1.83 16 25 C -0.10 -1.11 10.04 -39.61 -0.40 -1.51 16 26 C -0.12 -1.16 10.04 -39.55 -0.40 -1.55 16 27 C -0.11 -1.10 10.04 -39.61 -0.40 -1.49 16 28 C -0.11 -1.34 9.84 -39.40 -0.39 -1.73 16 29 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.40 9.51 7.90 -40.82 -0.32 9.19 16 31 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 32 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 33 H 0.41 7.63 5.12 -40.82 -0.21 7.42 16 34 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 35 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 37 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 39 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 40 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 41 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 43 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 LS Contribution 377.58 15.07 5.69 5.69 Total: -1.00 -32.31 377.58 -9.80 -42.11 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: -5.12 Total: 18.76 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: -5.67 Total: 3.57 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: 0.15 Total: -58.71 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: 0.17 Total: -26.96 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.31 -9.80 -42.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352538521.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.429 kcal (2) G-P(sol) polarization free energy of solvation -32.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds