Wall clock time and date at job start Sat Apr 11 2020 05:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86801 * 120.00404 * 2 1 4 4 H 1.48502 * 109.47179 * 269.99765 * 3 2 1 5 5 H 1.48497 * 109.47114 * 29.99891 * 3 2 1 6 6 H 1.48499 * 109.47243 * 149.99728 * 3 2 1 7 7 C 1.38949 * 119.99690 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00136 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00106 * 0.02562 * 7 2 1 10 10 C 1.34776 * 119.99856 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00275 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99791 * 180.02562 * 10 9 7 13 13 N 1.46490 * 109.47089 * 179.97438 * 12 10 9 14 14 C 1.34779 * 120.00089 * 179.97438 * 13 12 10 15 15 O 1.21587 * 119.99991 * 355.50467 * 14 13 12 16 16 N 1.34778 * 120.00382 * 175.49798 * 14 13 12 17 17 C 1.40027 * 120.00314 * 185.40193 * 16 14 13 18 18 C 1.38867 * 120.07028 * 292.02749 * 17 16 14 19 19 C 1.38112 * 119.92680 * 179.81115 * 18 17 16 20 20 C 1.38284 * 120.06975 * 0.44291 * 19 18 17 21 21 C 1.38286 * 120.14206 * 359.78786 * 20 19 18 22 22 C 1.38107 * 120.06538 * 359.97438 * 21 20 19 23 23 C 1.40036 * 119.99741 * 5.41128 * 16 14 13 24 24 C 1.38867 * 120.06631 * 291.49570 * 23 16 14 25 25 C 1.38108 * 119.92735 * 179.81508 * 24 23 16 26 26 C 1.38283 * 120.07351 * 0.44133 * 25 24 23 27 27 C 1.38281 * 120.13706 * 359.78637 * 26 25 24 28 28 C 1.38116 * 120.06912 * 0.02562 * 27 26 25 29 29 H 0.97007 * 119.99701 * 0.02562 * 1 2 3 30 30 H 0.96999 * 119.99567 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.46850 * 59.99451 * 12 10 9 32 32 H 1.08994 * 109.46602 * 299.99634 * 12 10 9 33 33 H 0.97006 * 120.00500 * 359.97438 * 13 12 10 34 34 H 1.07996 * 120.03712 * 0.02562 * 18 17 16 35 35 H 1.07998 * 119.96421 * 180.18610 * 19 18 17 36 36 H 1.08002 * 119.92741 * 179.76970 * 20 19 18 37 37 H 1.08000 * 119.96685 * 179.97438 * 21 20 19 38 38 H 1.08006 * 120.03191 * 179.97438 * 22 21 20 39 39 H 1.08000 * 120.03873 * 0.02562 * 24 23 16 40 40 H 1.08006 * 119.96451 * 180.18682 * 25 24 23 41 41 H 1.07999 * 119.93268 * 179.76835 * 26 25 24 42 42 H 1.07998 * 119.96499 * 179.97438 * 27 26 25 43 43 H 1.08004 * 120.03050 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4958 2.0463 -1.4001 5 1 1.4457 2.6526 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0087 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0001 9 7 1.3232 -2.3907 -0.0016 10 6 1.9970 -3.5579 -0.0016 11 8 3.2099 -3.5580 -0.0011 12 6 1.2435 -4.8630 -0.0034 13 7 2.1953 -5.9765 -0.0036 14 6 1.7461 -7.2472 -0.0046 15 8 0.5537 -7.4705 0.0773 16 7 2.6184 -8.2704 -0.0964 17 6 2.1473 -9.5840 -0.2114 18 6 1.4908 -10.1837 0.8552 19 6 1.0239 -11.4781 0.7372 20 6 1.2177 -12.1801 -0.4384 21 6 1.8753 -11.5874 -1.5007 22 6 2.3402 -10.2916 -1.3906 23 6 3.9961 -8.0199 -0.0766 24 6 4.5996 -7.3655 -1.1425 25 6 5.9578 -7.1165 -1.1182 26 6 6.7182 -7.5261 -0.0383 27 6 6.1210 -8.1821 1.0224 28 6 4.7625 -8.4307 1.0059 29 1 -0.4850 0.8401 -0.0004 30 1 0.3532 -2.3906 -0.0016 31 1 0.6178 -4.9200 -0.8940 32 1 0.6159 -4.9213 0.8859 33 1 3.1491 -5.7993 -0.0031 34 1 1.3424 -9.6373 1.7749 35 1 0.5106 -11.9440 1.5653 36 1 0.8549 -13.1935 -0.5268 37 1 2.0254 -12.1384 -2.4174 38 1 2.8541 -9.8294 -2.2206 39 1 4.0069 -7.0486 -1.9879 40 1 6.4273 -6.6049 -1.9455 41 1 7.7808 -7.3335 -0.0235 42 1 6.7177 -8.5012 1.8642 43 1 4.2968 -8.9435 1.8345 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352538521.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:41 Heat of formation + Delta-G solvation = -13.310581 kcal Electronic energy + Delta-G solvation = -28360.954299 eV Core-core repulsion = 24370.776243 eV Total energy + Delta-G solvation = -3990.178056 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.35313 -40.43481 -39.76359 -39.54076 -36.51583 -36.28429 -35.41556 -33.39565 -32.04913 -31.84731 -31.60850 -30.24036 -28.86535 -26.47283 -24.11119 -23.91770 -23.67693 -23.13510 -21.42105 -21.26969 -20.17282 -19.69319 -18.97851 -17.59465 -17.39912 -17.30666 -17.13091 -16.61934 -16.39399 -16.34102 -15.86836 -15.64191 -15.42052 -15.33671 -15.08811 -14.84082 -14.44385 -14.34995 -14.04795 -13.74283 -13.70677 -13.56217 -13.55058 -12.92234 -12.75184 -12.46800 -12.44954 -12.34340 -12.13444 -12.06930 -11.67727 -11.58454 -10.77988 -10.59149 -10.30636 -10.10850 -9.97513 -9.93679 -9.90329 -9.30920 -8.52101 -6.02414 0.09593 0.32975 0.37517 0.43156 1.26790 1.35347 1.42631 1.55393 1.78466 1.89542 2.25818 2.61952 2.73973 2.84187 3.10370 3.14841 3.90644 3.95073 3.98692 4.02371 4.14133 4.21541 4.23890 4.31715 4.35921 4.37335 4.46065 4.50021 4.51464 4.62145 4.73994 5.01755 5.06043 5.15092 5.30146 5.31153 5.37234 5.42583 5.48708 5.52178 5.54834 5.60183 5.67335 5.89906 5.97645 6.07478 6.46040 6.70514 7.01776 7.24973 7.41833 7.91717 8.64895 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014582 B = 0.002808 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.727292 B = 9967.439333 C =11371.494775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.010 4.010 3 Si 0.997 3.003 4 H -0.269 1.269 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.336 4.336 8 H 0.087 0.913 9 N -0.557 5.557 10 C 0.434 3.566 11 O -0.621 6.621 12 C 0.137 3.863 13 N -0.718 5.718 14 C 0.710 3.290 15 O -0.606 6.606 16 N -0.535 5.535 17 C 0.133 3.867 18 C -0.122 4.122 19 C -0.111 4.111 20 C -0.115 4.115 21 C -0.109 4.109 22 C -0.130 4.130 23 C 0.105 3.895 24 C -0.133 4.133 25 C -0.107 4.107 26 C -0.113 4.113 27 C -0.105 4.105 28 C -0.123 4.123 29 H 0.280 0.720 30 H 0.399 0.601 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.410 0.590 34 H 0.110 0.890 35 H 0.149 0.851 36 H 0.158 0.842 37 H 0.154 0.846 38 H 0.123 0.877 39 H 0.116 0.884 40 H 0.145 0.855 41 H 0.156 0.844 42 H 0.156 0.844 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.489 -23.120 -0.787 24.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.211 4.211 3 Si 0.820 3.180 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.465 4.465 8 H 0.105 0.895 9 N -0.192 5.192 10 C 0.221 3.779 11 O -0.508 6.508 12 C 0.009 3.991 13 N -0.377 5.377 14 C 0.413 3.587 15 O -0.485 6.485 16 N -0.263 5.263 17 C 0.044 3.956 18 C -0.142 4.142 19 C -0.130 4.130 20 C -0.133 4.133 21 C -0.127 4.127 22 C -0.149 4.149 23 C 0.016 3.984 24 C -0.153 4.153 25 C -0.126 4.126 26 C -0.130 4.130 27 C -0.123 4.123 28 C -0.143 4.143 29 H 0.090 0.910 30 H 0.233 0.767 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.249 0.751 34 H 0.128 0.872 35 H 0.167 0.833 36 H 0.176 0.824 37 H 0.172 0.828 38 H 0.141 0.859 39 H 0.134 0.866 40 H 0.163 0.837 41 H 0.174 0.826 42 H 0.174 0.826 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 8.227 -23.041 -0.733 24.476 hybrid contribution -0.127 1.361 0.009 1.367 sum 8.100 -21.680 -0.723 23.155 Atomic orbital electron populations 1.69685 1.07042 1.29671 1.49199 1.26142 0.96538 1.02695 0.95730 0.84863 0.77922 0.76416 0.78764 1.19468 1.19630 1.19405 1.19737 0.92966 0.83411 1.50408 0.89521 1.41811 1.09571 1.04493 1.63343 1.20271 0.88105 0.85726 0.83842 1.90475 1.15036 1.87426 1.57900 1.20695 0.90946 0.83163 1.04307 1.44856 1.11457 1.03037 1.78300 1.15817 0.84504 0.80655 0.77748 1.90901 1.14801 1.84178 1.58614 1.41962 1.03676 1.04138 1.76514 1.17637 1.00336 0.82621 0.95001 1.21339 0.99078 0.96121 0.97625 1.21354 0.99066 0.93062 0.99493 1.21604 0.97876 1.01314 0.92529 1.21366 0.97366 0.93640 1.00335 1.21374 1.01523 0.96305 0.95738 1.17859 0.82018 1.02611 0.95925 1.21419 0.96300 1.00307 0.97306 1.21366 0.92593 0.98701 0.99906 1.21637 1.01652 0.96706 0.93046 1.21413 0.93474 0.97870 0.99580 1.21405 0.95159 1.00966 0.96741 0.91034 0.76697 0.88696 0.88843 0.75074 0.87151 0.83285 0.82427 0.82790 0.85922 0.86593 0.83673 0.82612 0.82604 0.85455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.98 13.05 21.66 0.28 -48.69 16 2 C -0.01 -0.54 5.50 84.93 0.47 -0.08 16 3 Si 1.00 41.86 29.55 68.60 2.03 43.89 16 4 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 5 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 6 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 7 C -0.34 -18.64 9.68 84.04 0.81 -17.83 16 8 H 0.09 5.05 7.16 -2.91 -0.02 5.03 16 9 N -0.56 -28.44 5.29 -306.98 -1.62 -30.06 16 10 C 0.43 20.71 7.85 87.66 0.69 21.40 16 11 O -0.62 -32.93 15.24 -3.06 -0.05 -32.97 16 12 C 0.14 5.41 6.16 85.64 0.53 5.94 16 13 N -0.72 -27.22 5.30 -482.32 -2.56 -29.78 16 14 C 0.71 26.43 8.06 179.05 1.44 27.87 16 15 O -0.61 -25.64 15.93 -3.99 -0.06 -25.70 16 16 N -0.54 -16.56 2.59 -470.21 -1.22 -17.78 16 17 C 0.13 3.75 4.71 38.13 0.18 3.93 16 18 C -0.12 -3.15 9.35 22.39 0.21 -2.94 16 19 C -0.11 -2.12 10.04 22.25 0.22 -1.90 16 20 C -0.12 -1.82 10.04 22.29 0.22 -1.59 16 21 C -0.11 -1.90 10.04 22.25 0.22 -1.68 16 22 C -0.13 -3.07 9.83 22.39 0.22 -2.85 16 23 C 0.11 2.90 4.27 38.13 0.16 3.06 16 24 C -0.13 -3.51 8.46 22.39 0.19 -3.33 16 25 C -0.11 -2.31 10.04 22.25 0.22 -2.09 16 26 C -0.11 -2.04 10.04 22.29 0.22 -1.82 16 27 C -0.11 -1.96 10.04 22.25 0.22 -1.73 16 28 C -0.12 -2.90 9.84 22.39 0.22 -2.68 16 29 H 0.28 13.99 8.31 -92.70 -0.77 13.22 16 30 H 0.40 19.60 7.90 -92.71 -0.73 18.87 16 31 H 0.10 3.54 8.14 -2.39 -0.02 3.52 16 32 H 0.09 3.53 8.14 -2.39 -0.02 3.51 16 33 H 0.41 15.80 5.12 -92.70 -0.47 15.32 16 34 H 0.11 3.03 8.06 -2.91 -0.02 3.01 16 35 H 0.15 2.03 8.06 -2.91 -0.02 2.00 16 36 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 37 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 38 H 0.12 2.79 8.06 -2.91 -0.02 2.77 16 39 H 0.12 3.21 8.06 -2.91 -0.02 3.18 16 40 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 41 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 42 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 43 H 0.13 2.83 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -70.84 377.58 3.11 -67.73 By element: Atomic # 1 Polarization: 51.82 SS G_CDS: -0.15 Total: 51.67 kcal Atomic # 6 Polarization: 15.23 SS G_CDS: 6.46 Total: 21.69 kcal Atomic # 7 Polarization: -121.19 SS G_CDS: -5.12 Total: -126.31 kcal Atomic # 8 Polarization: -58.56 SS G_CDS: -0.11 Total: -58.67 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -70.84 3.11 -67.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352538521.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.420 kcal (2) G-P(sol) polarization free energy of solvation -70.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds