Wall clock time and date at job start Sat Apr 11 2020 05:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47325 * 27.83256 * 3 2 1 5 5 C 1.36705 * 120.00110 * 262.18781 * 4 3 2 6 6 H 1.07993 * 119.99646 * 143.30429 * 5 4 3 7 7 C 1.39129 * 119.99337 * 323.30878 * 5 4 3 8 8 N 1.31319 * 119.99496 * 167.74293 * 7 5 4 9 9 Si 1.86794 * 120.00667 * 347.73799 * 7 5 4 10 10 H 1.48504 * 109.47122 * 91.72773 * 9 7 5 11 11 H 1.48492 * 109.47569 * 211.72715 * 9 7 5 12 12 H 1.48506 * 109.47112 * 331.73162 * 9 7 5 13 13 C 1.34776 * 120.00146 * 82.18690 * 4 3 2 14 14 O 1.21736 * 119.99928 * 182.88067 * 13 4 3 15 15 C 1.46508 * 120.00046 * 2.88195 * 13 4 3 16 16 N 1.29868 * 119.55703 * 353.90489 * 15 13 4 17 17 N 1.39862 * 121.11294 * 180.17783 * 16 15 13 18 18 C 1.39970 * 119.79523 * 198.82899 * 17 16 15 19 19 C 1.38923 * 120.07055 * 124.97282 * 18 17 16 20 20 C 1.38079 * 119.92405 * 180.02562 * 19 18 17 21 21 C 1.38306 * 120.07750 * 0.02562 * 20 19 18 22 22 C 1.38275 * 120.14455 * 359.97438 * 21 20 19 23 23 C 1.50697 * 119.96225 * 180.02562 * 22 21 20 24 24 C 1.38126 * 120.06983 * 359.76864 * 22 21 20 25 25 C 1.34746 * 120.41270 * 19.11033 * 17 16 15 26 26 O 1.21249 * 120.11299 * 179.72104 * 25 17 16 27 27 C 1.50778 * 119.78248 * 359.72529 * 25 17 16 28 28 C 1.50543 * 119.55840 * 173.87959 * 15 13 4 29 29 H 4.40642 * 5.51364 * 180.02562 * 4 1 2 30 30 H 1.08996 * 109.46897 * 267.82506 * 3 2 1 31 31 H 1.09001 * 109.46796 * 147.83000 * 3 2 1 32 32 H 0.96996 * 119.99932 * 179.97438 * 8 7 5 33 33 H 1.07995 * 120.03270 * 0.03029 * 19 18 17 34 34 H 1.08005 * 119.96327 * 180.02562 * 20 19 18 35 35 H 1.08001 * 119.93400 * 180.02562 * 21 20 19 36 36 H 1.09006 * 109.47437 * 90.00297 * 23 22 21 37 37 H 1.09005 * 109.46706 * 209.99442 * 23 22 21 38 38 H 1.08999 * 109.47350 * 329.99863 * 23 22 21 39 39 H 1.07999 * 120.03733 * 180.25828 * 24 22 21 40 40 H 1.08994 * 109.51480 * 206.82159 * 27 25 17 41 41 H 1.09000 * 109.51126 * 86.66938 * 27 25 17 42 42 H 1.08998 * 109.45367 * 265.81895 * 28 15 13 43 43 H 1.09002 * 109.45441 * 25.76956 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2205 -0.6448 5 6 3.5150 -2.2904 0.1165 6 1 3.3118 -3.2948 -0.2241 7 6 4.1635 -2.0850 1.3302 8 7 4.3140 -3.0823 2.1711 9 14 4.8201 -0.3908 1.7635 10 1 3.7850 0.3641 2.5145 11 1 6.0369 -0.5313 2.6031 12 1 5.1604 0.3418 0.5174 13 6 3.2100 -1.2892 -1.9887 14 8 3.5664 -2.3216 -2.5265 15 6 2.8628 -0.1214 -2.8025 16 7 2.3711 0.9353 -2.2297 17 7 2.0249 2.0667 -2.9755 18 6 1.8780 3.3031 -2.3360 19 6 2.6041 4.4037 -2.7735 20 6 2.4573 5.6218 -2.1401 21 6 1.5890 5.7469 -1.0709 22 6 0.8648 4.6534 -0.6329 23 6 -0.0806 4.7945 0.5322 24 6 1.0030 3.4333 -1.2654 25 6 1.8263 1.9728 -4.3049 26 8 1.5214 2.9562 -4.9454 27 6 1.9844 0.6408 -4.9935 28 6 3.0815 -0.1622 -4.2914 29 1 -1.0498 -0.0002 -0.0003 30 1 3.0093 0.0398 1.0269 31 1 3.0089 0.8707 -0.5472 32 1 4.7664 -2.9393 3.0171 33 1 3.2826 4.3065 -3.6082 34 1 3.0212 6.4779 -2.4800 35 1 1.4757 6.7008 -0.5774 36 1 -1.0689 5.0730 0.1665 37 1 -0.1445 3.8457 1.0650 38 1 0.2878 5.5665 1.2076 39 1 0.4340 2.5806 -0.9256 40 1 2.2604 0.8003 -6.0358 41 1 1.0439 0.0920 -4.9451 42 1 4.0543 0.2690 -4.5274 43 1 3.0499 -1.1963 -4.6348 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367201786.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:04 Heat of formation + Delta-G solvation = 99.985622 kcal Electronic energy + Delta-G solvation = -29942.668590 eV Core-core repulsion = 25957.403426 eV Total energy + Delta-G solvation = -3985.265164 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.07425 -39.40142 -38.80444 -36.88540 -35.69030 -34.35890 -32.87422 -32.49934 -31.89037 -31.27077 -29.82666 -27.08578 -26.91760 -26.00162 -25.32703 -23.33051 -22.45562 -21.73172 -19.92629 -18.70011 -17.90245 -17.70029 -17.32057 -16.81639 -16.34575 -16.19769 -15.89158 -15.49270 -15.08185 -14.76037 -14.18660 -14.07988 -13.95240 -13.77523 -13.62702 -13.37687 -13.15435 -12.88270 -12.78027 -12.51658 -12.43365 -12.27282 -12.23662 -12.01752 -11.76380 -11.39839 -11.17015 -11.11851 -10.75350 -10.64696 -10.34956 -9.86028 -9.80724 -9.41685 -9.30814 -9.25806 -8.84590 -8.77638 -8.24846 -8.13861 -6.64469 -4.23024 1.14263 1.18174 1.33192 2.23293 2.46991 2.88269 3.05575 3.06365 3.15723 3.42239 3.57306 3.77401 3.89656 3.97526 4.28545 4.55280 4.70624 4.74777 4.81584 4.86270 4.98538 5.01686 5.07552 5.13685 5.18871 5.27908 5.40122 5.50719 5.53078 5.59445 5.67786 5.73927 5.75037 5.80246 6.01736 6.06842 6.22081 6.30612 6.40384 6.42378 6.46051 6.54427 6.94524 7.23399 7.66142 7.94740 7.99997 8.13383 8.21064 8.62380 8.97628 9.39791 10.45054 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010698 B = 0.005229 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.588737 B = 5353.069615 C = 6870.700769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.147 4.147 3 C 0.177 3.823 4 N -0.420 5.420 5 C -0.309 4.309 6 H 0.118 0.882 7 C 0.062 3.938 8 N -0.845 5.845 9 Si 0.880 3.120 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.259 1.259 13 C 0.499 3.501 14 O -0.550 6.550 15 C 0.104 3.896 16 N -0.229 5.229 17 N -0.420 5.420 18 C 0.163 3.837 19 C -0.110 4.110 20 C -0.107 4.107 21 C -0.122 4.122 22 C -0.079 4.079 23 C -0.114 4.114 24 C -0.106 4.106 25 C 0.497 3.503 26 O -0.518 6.518 27 C -0.137 4.137 28 C -0.106 4.106 29 H 0.211 0.789 30 H 0.087 0.913 31 H 0.124 0.876 32 H 0.281 0.719 33 H 0.122 0.878 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.133 0.867 40 H 0.117 0.883 41 H 0.107 0.893 42 H 0.098 0.902 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.306 15.082 -5.655 16.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.148 4.148 3 C 0.054 3.946 4 N -0.138 5.138 5 C -0.438 4.438 6 H 0.136 0.864 7 C -0.147 4.147 8 N -0.480 5.480 9 Si 0.708 3.292 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.183 1.183 13 C 0.287 3.713 14 O -0.430 6.430 15 C -0.087 4.087 16 N -0.040 5.040 17 N -0.233 5.233 18 C 0.073 3.927 19 C -0.131 4.131 20 C -0.126 4.126 21 C -0.140 4.140 22 C -0.080 4.080 23 C -0.170 4.170 24 C -0.126 4.126 25 C 0.286 3.714 26 O -0.391 6.391 27 C -0.178 4.178 28 C -0.146 4.146 29 H 0.228 0.772 30 H 0.105 0.895 31 H 0.141 0.859 32 H 0.092 0.908 33 H 0.140 0.860 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.151 0.849 40 H 0.135 0.865 41 H 0.125 0.875 42 H 0.116 0.884 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.474 15.423 -5.394 17.231 hybrid contribution 0.266 0.534 -0.301 0.669 sum -5.208 15.957 -5.694 17.725 Atomic orbital electron populations 1.24566 0.95493 1.01878 1.02797 1.23208 0.94223 0.98847 0.98512 1.19464 0.84915 0.90843 0.99357 1.43667 1.52419 1.13331 1.04406 1.19271 1.36154 0.87648 1.00696 0.86428 1.25444 0.95397 0.98242 0.95605 1.69598 1.38112 1.31954 1.08356 0.86926 0.78911 0.83648 0.79686 1.19434 1.20781 1.18332 1.17052 0.85374 0.86695 0.82186 1.90746 1.51812 1.29648 1.70781 1.25485 0.93189 0.93754 0.96255 1.75755 1.13206 0.94302 1.20753 1.46528 1.64822 1.06127 1.05839 1.17304 0.97048 0.82989 0.95397 1.21066 0.98896 0.92621 1.00470 1.20922 0.98900 0.96758 0.95991 1.21062 0.97254 0.98312 0.97422 1.19788 0.98003 0.92778 0.97383 1.20793 0.97882 1.03037 0.95314 1.21148 0.97456 0.97925 0.96036 1.21403 0.76295 0.92024 0.81699 1.90719 1.45660 1.38862 1.63838 1.21838 1.02022 0.92465 1.01439 1.20883 0.99229 1.04438 0.90050 0.77244 0.89539 0.85949 0.90832 0.86046 0.85562 0.85846 0.91149 0.91136 0.91414 0.84909 0.86515 0.87455 0.88424 0.86302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.84 18.74 29.55 0.55 -3.29 16 2 C -0.15 -2.85 11.92 -37.12 -0.44 -3.29 16 3 C 0.18 3.70 3.81 -6.83 -0.03 3.68 16 4 N -0.42 -9.92 2.24 -119.50 -0.27 -10.19 16 5 C -0.31 -8.29 9.49 -15.05 -0.14 -8.43 16 6 H 0.12 3.51 7.86 -52.49 -0.41 3.09 16 7 C 0.06 1.62 5.43 -17.44 -0.09 1.53 16 8 N -0.85 -23.00 13.95 55.51 0.77 -22.22 16 9 Si 0.88 19.44 24.56 -169.99 -4.18 15.26 16 10 H -0.27 -5.55 6.69 56.52 0.38 -5.17 16 11 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 12 H -0.26 -5.58 6.91 56.52 0.39 -5.19 16 13 C 0.50 11.18 7.48 -12.93 -0.10 11.08 16 14 O -0.55 -13.66 16.05 5.16 0.08 -13.58 16 15 C 0.10 1.87 6.66 -80.17 -0.53 1.34 16 16 N -0.23 -4.03 5.78 34.87 0.20 -3.83 16 17 N -0.42 -6.88 3.54 -9.83 -0.03 -6.91 16 18 C 0.16 2.56 5.45 -83.65 -0.46 2.11 16 19 C -0.11 -1.57 8.82 -39.39 -0.35 -1.91 16 20 C -0.11 -1.26 10.04 -39.61 -0.40 -1.65 16 21 C -0.12 -1.36 9.70 -39.54 -0.38 -1.74 16 22 C -0.08 -0.96 5.88 -104.65 -0.62 -1.58 16 23 C -0.11 -1.08 10.01 36.00 0.36 -0.72 16 24 C -0.11 -1.54 9.49 -39.39 -0.37 -1.92 16 25 C 0.50 7.75 7.35 -10.96 -0.08 7.67 16 26 O -0.52 -9.10 16.15 5.58 0.09 -9.01 16 27 C -0.14 -1.69 6.20 -27.84 -0.17 -1.86 16 28 C -0.11 -1.46 5.89 -27.95 -0.16 -1.63 16 29 H 0.21 2.66 7.80 -54.10 -0.42 2.23 16 30 H 0.09 1.88 2.72 -51.93 -0.14 1.74 16 31 H 0.12 2.44 5.31 -52.71 -0.28 2.16 16 32 H 0.28 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.12 1.70 7.85 -52.49 -0.41 1.29 16 34 H 0.13 1.14 8.06 -52.48 -0.42 0.71 16 35 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 38 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 39 H 0.13 1.99 7.31 -52.49 -0.38 1.61 16 40 H 0.12 1.15 8.14 -51.93 -0.42 0.72 16 41 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.12 1.60 7.48 -51.93 -0.39 1.21 16 LS Contribution 364.80 15.07 5.50 5.50 Total: -1.00 -31.26 364.80 -6.23 -37.49 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -4.99 Total: 8.11 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -3.41 Total: -0.62 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: 0.67 Total: -43.15 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: 0.17 Total: -22.59 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -4.18 Total: 15.26 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.26 -6.23 -37.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367201786.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.477 kcal (2) G-P(sol) polarization free energy of solvation -31.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds