Wall clock time and date at job start Sat Apr 11 2020 05:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47325 * 27.83256 * 3 2 1 5 5 C 1.36705 * 120.00110 * 262.18781 * 4 3 2 6 6 H 1.07993 * 119.99646 * 143.30429 * 5 4 3 7 7 C 1.39129 * 119.99337 * 323.30878 * 5 4 3 8 8 N 1.31319 * 119.99496 * 167.74293 * 7 5 4 9 9 Si 1.86794 * 120.00667 * 347.73799 * 7 5 4 10 10 H 1.48504 * 109.47122 * 91.72773 * 9 7 5 11 11 H 1.48492 * 109.47569 * 211.72715 * 9 7 5 12 12 H 1.48506 * 109.47112 * 331.73162 * 9 7 5 13 13 C 1.34776 * 120.00146 * 82.18690 * 4 3 2 14 14 O 1.21736 * 119.99928 * 182.88067 * 13 4 3 15 15 C 1.46508 * 120.00046 * 2.88195 * 13 4 3 16 16 N 1.29868 * 119.55703 * 353.90489 * 15 13 4 17 17 N 1.39862 * 121.11294 * 180.17783 * 16 15 13 18 18 C 1.39970 * 119.79523 * 198.82899 * 17 16 15 19 19 C 1.38923 * 120.07055 * 124.97282 * 18 17 16 20 20 C 1.38079 * 119.92405 * 180.02562 * 19 18 17 21 21 C 1.38306 * 120.07750 * 0.02562 * 20 19 18 22 22 C 1.38275 * 120.14455 * 359.97438 * 21 20 19 23 23 C 1.50697 * 119.96225 * 180.02562 * 22 21 20 24 24 C 1.38126 * 120.06983 * 359.76864 * 22 21 20 25 25 C 1.34746 * 120.41270 * 19.11033 * 17 16 15 26 26 O 1.21249 * 120.11299 * 179.72104 * 25 17 16 27 27 C 1.50778 * 119.78248 * 359.72529 * 25 17 16 28 28 C 1.50543 * 119.55840 * 173.87959 * 15 13 4 29 29 H 4.40642 * 5.51364 * 180.02562 * 4 1 2 30 30 H 1.08996 * 109.46897 * 267.82506 * 3 2 1 31 31 H 1.09001 * 109.46796 * 147.83000 * 3 2 1 32 32 H 0.96996 * 119.99932 * 179.97438 * 8 7 5 33 33 H 1.07995 * 120.03270 * 0.03029 * 19 18 17 34 34 H 1.08005 * 119.96327 * 180.02562 * 20 19 18 35 35 H 1.08001 * 119.93400 * 180.02562 * 21 20 19 36 36 H 1.09006 * 109.47437 * 90.00297 * 23 22 21 37 37 H 1.09005 * 109.46706 * 209.99442 * 23 22 21 38 38 H 1.08999 * 109.47350 * 329.99863 * 23 22 21 39 39 H 1.07999 * 120.03733 * 180.25828 * 24 22 21 40 40 H 1.08994 * 109.51480 * 206.82159 * 27 25 17 41 41 H 1.09000 * 109.51126 * 86.66938 * 27 25 17 42 42 H 1.08998 * 109.45367 * 265.81895 * 28 15 13 43 43 H 1.09002 * 109.45441 * 25.76956 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2205 -0.6448 5 6 3.5150 -2.2904 0.1165 6 1 3.3118 -3.2948 -0.2241 7 6 4.1635 -2.0850 1.3302 8 7 4.3140 -3.0823 2.1711 9 14 4.8201 -0.3908 1.7635 10 1 3.7850 0.3641 2.5145 11 1 6.0369 -0.5313 2.6031 12 1 5.1604 0.3418 0.5174 13 6 3.2100 -1.2892 -1.9887 14 8 3.5664 -2.3216 -2.5265 15 6 2.8628 -0.1214 -2.8025 16 7 2.3711 0.9353 -2.2297 17 7 2.0249 2.0667 -2.9755 18 6 1.8780 3.3031 -2.3360 19 6 2.6041 4.4037 -2.7735 20 6 2.4573 5.6218 -2.1401 21 6 1.5890 5.7469 -1.0709 22 6 0.8648 4.6534 -0.6329 23 6 -0.0806 4.7945 0.5322 24 6 1.0030 3.4333 -1.2654 25 6 1.8263 1.9728 -4.3049 26 8 1.5214 2.9562 -4.9454 27 6 1.9844 0.6408 -4.9935 28 6 3.0815 -0.1622 -4.2914 29 1 -1.0498 -0.0002 -0.0003 30 1 3.0093 0.0398 1.0269 31 1 3.0089 0.8707 -0.5472 32 1 4.7664 -2.9393 3.0171 33 1 3.2826 4.3065 -3.6082 34 1 3.0212 6.4779 -2.4800 35 1 1.4757 6.7008 -0.5774 36 1 -1.0689 5.0730 0.1665 37 1 -0.1445 3.8457 1.0650 38 1 0.2878 5.5665 1.2076 39 1 0.4340 2.5806 -0.9256 40 1 2.2604 0.8003 -6.0358 41 1 1.0439 0.0920 -4.9451 42 1 4.0543 0.2690 -4.5274 43 1 3.0499 -1.1963 -4.6348 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000367201786.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:03 Heat of formation + Delta-G solvation = 81.692816 kcal Electronic energy + Delta-G solvation = -29943.461826 eV Core-core repulsion = 25957.403426 eV Total energy + Delta-G solvation = -3986.058400 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.33088 -40.98692 -39.89316 -38.28526 -37.46708 -35.51777 -34.66269 -33.47882 -33.39820 -32.61602 -30.93737 -28.56207 -28.06492 -27.57166 -26.60676 -24.71136 -23.52391 -22.88961 -21.33602 -20.31535 -19.29727 -19.10282 -18.67915 -18.33684 -17.73356 -17.36416 -17.24011 -16.83478 -16.48064 -16.04730 -15.80583 -15.35487 -15.06674 -15.05163 -14.82475 -14.62752 -14.55218 -14.46487 -14.09499 -13.99455 -13.74080 -13.48613 -13.10316 -13.06694 -12.87337 -12.73987 -12.60849 -12.38751 -12.07697 -12.05495 -11.89212 -11.43774 -11.32849 -11.07281 -10.95414 -10.58331 -10.35278 -10.01355 -9.74888 -9.36816 -8.61593 -6.29570 -0.25408 0.12723 0.36435 0.97127 1.12928 1.22027 1.28042 1.33881 1.64906 1.94181 2.05960 2.10423 2.40480 2.67621 2.87317 3.05513 3.42392 3.49988 3.58120 3.80021 3.88892 3.94442 3.98137 4.09010 4.10760 4.14090 4.26696 4.37491 4.46637 4.63238 4.66421 4.69783 4.81514 4.84945 4.91581 5.02490 5.06910 5.20589 5.29714 5.35655 5.41004 5.43957 5.60683 5.89999 5.97843 6.25727 6.43586 6.66549 6.72684 6.75432 7.02755 7.53503 8.53193 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010698 B = 0.005229 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.588737 B = 5353.069615 C = 6870.700769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.202 4.202 3 C 0.184 3.816 4 N -0.436 5.436 5 C -0.332 4.332 6 H 0.066 0.934 7 C 0.022 3.978 8 N -0.893 5.893 9 Si 0.938 3.062 10 H -0.244 1.244 11 H -0.275 1.275 12 H -0.254 1.254 13 C 0.505 3.495 14 O -0.581 6.581 15 C 0.097 3.903 16 N -0.220 5.220 17 N -0.418 5.418 18 C 0.129 3.871 19 C -0.127 4.127 20 C -0.104 4.104 21 C -0.116 4.116 22 C -0.081 4.081 23 C -0.112 4.112 24 C -0.123 4.123 25 C 0.493 3.507 26 O -0.538 6.538 27 C -0.127 4.127 28 C -0.100 4.100 29 H 0.251 0.749 30 H 0.077 0.923 31 H 0.132 0.868 32 H 0.287 0.713 33 H 0.116 0.884 34 H 0.156 0.844 35 H 0.158 0.842 36 H 0.083 0.917 37 H 0.063 0.937 38 H 0.087 0.913 39 H 0.122 0.878 40 H 0.149 0.851 41 H 0.119 0.881 42 H 0.115 0.885 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.436 19.052 -6.258 21.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.203 4.203 3 C 0.063 3.937 4 N -0.156 5.156 5 C -0.460 4.460 6 H 0.084 0.916 7 C -0.183 4.183 8 N -0.530 5.530 9 Si 0.762 3.238 10 H -0.170 1.170 11 H -0.202 1.202 12 H -0.178 1.178 13 C 0.293 3.707 14 O -0.462 6.462 15 C -0.095 4.095 16 N -0.032 5.032 17 N -0.232 5.232 18 C 0.039 3.961 19 C -0.147 4.147 20 C -0.122 4.122 21 C -0.134 4.134 22 C -0.082 4.082 23 C -0.169 4.169 24 C -0.143 4.143 25 C 0.283 3.717 26 O -0.412 6.412 27 C -0.167 4.167 28 C -0.140 4.140 29 H 0.267 0.733 30 H 0.094 0.906 31 H 0.148 0.852 32 H 0.097 0.903 33 H 0.134 0.866 34 H 0.173 0.827 35 H 0.176 0.824 36 H 0.101 0.899 37 H 0.082 0.918 38 H 0.106 0.894 39 H 0.140 0.860 40 H 0.167 0.833 41 H 0.137 0.863 42 H 0.133 0.867 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.619 19.395 -5.981 21.348 hybrid contribution 0.444 -0.577 -0.242 0.767 sum -6.176 18.818 -6.223 20.760 Atomic orbital electron populations 1.25472 0.96251 0.99010 0.99929 1.23210 0.94520 1.01432 1.01143 1.19390 0.86269 0.89502 0.98558 1.43689 1.53590 1.13550 1.04721 1.18824 1.38265 0.86898 1.02047 0.91605 1.26113 0.94971 1.02217 0.94995 1.69699 1.39760 1.34307 1.09202 0.86011 0.78834 0.79129 0.79863 1.17001 1.20176 1.17763 1.17634 0.83505 0.87382 0.82146 1.90712 1.52468 1.31408 1.71628 1.25098 0.94278 0.92359 0.97739 1.75572 1.11245 0.94545 1.21796 1.46604 1.64554 1.05775 1.06268 1.17660 0.98707 0.83000 0.96705 1.21187 0.99208 0.93359 1.00947 1.21309 0.98720 0.96622 0.95542 1.21489 0.95815 0.99321 0.96753 1.20161 0.98192 0.92186 0.97675 1.20851 0.97980 1.03478 0.94572 1.21209 0.97900 0.98799 0.96428 1.21975 0.75461 0.92922 0.81315 1.90707 1.46578 1.39877 1.64000 1.21920 1.02063 0.90258 1.02409 1.20966 1.00753 1.05227 0.87036 0.73316 0.90573 0.85167 0.90330 0.86597 0.82657 0.82395 0.89853 0.91757 0.89409 0.85957 0.83302 0.86250 0.86675 0.85887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.98 18.74 74.32 1.39 -4.59 16 2 C -0.20 -7.74 11.92 31.13 0.37 -7.37 16 3 C 0.18 7.77 3.81 84.58 0.32 8.09 16 4 N -0.44 -21.36 2.24 -650.20 -1.46 -22.82 16 5 C -0.33 -18.93 9.49 84.15 0.80 -18.14 16 6 H 0.07 4.31 7.86 -2.91 -0.02 4.29 16 7 C 0.02 1.19 5.43 84.98 0.46 1.66 16 8 N -0.89 -51.12 13.95 21.69 0.30 -50.82 16 9 Si 0.94 40.69 24.56 68.60 1.68 42.37 16 10 H -0.24 -9.61 6.69 99.48 0.67 -8.95 16 11 H -0.28 -11.55 7.11 99.48 0.71 -10.85 16 12 H -0.25 -10.63 6.91 99.48 0.69 -9.95 16 13 C 0.51 23.25 7.48 86.40 0.65 23.90 16 14 O -0.58 -30.06 16.05 -4.46 -0.07 -30.14 16 15 C 0.10 3.43 6.66 44.96 0.30 3.73 16 16 N -0.22 -7.58 5.78 -43.58 -0.25 -7.83 16 17 N -0.42 -13.17 3.54 -303.42 -1.07 -14.25 16 18 C 0.13 3.89 5.45 38.16 0.21 4.09 16 19 C -0.13 -3.39 8.82 22.40 0.20 -3.19 16 20 C -0.10 -2.10 10.04 22.25 0.22 -1.87 16 21 C -0.12 -2.12 9.70 22.29 0.22 -1.91 16 22 C -0.08 -1.76 5.88 -19.88 -0.12 -1.88 16 23 C -0.11 -1.75 10.01 71.24 0.71 -1.04 16 24 C -0.12 -3.41 9.49 22.40 0.21 -3.20 16 25 C 0.49 14.49 7.35 87.69 0.64 15.13 16 26 O -0.54 -17.97 16.15 -2.93 -0.05 -18.02 16 27 C -0.13 -2.79 6.20 29.88 0.19 -2.60 16 28 C -0.10 -2.59 5.89 29.80 0.18 -2.42 16 29 H 0.25 5.42 7.80 -4.43 -0.03 5.39 16 30 H 0.08 3.31 2.72 -2.39 -0.01 3.30 16 31 H 0.13 5.17 5.31 -3.41 -0.02 5.15 16 32 H 0.29 14.92 8.31 -92.71 -0.77 14.15 16 33 H 0.12 3.12 7.85 -2.91 -0.02 3.10 16 34 H 0.16 2.17 8.06 -2.91 -0.02 2.14 16 35 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 36 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 37 H 0.06 1.09 8.09 -2.38 -0.02 1.07 16 38 H 0.09 1.02 8.08 -2.39 -0.02 1.01 16 39 H 0.12 3.53 7.31 -2.91 -0.02 3.51 16 40 H 0.15 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 42 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 43 H 0.12 3.15 7.48 -2.39 -0.02 3.13 16 Total: -1.00 -73.43 364.80 7.02 -66.41 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: 0.98 Total: 26.67 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: 6.95 Total: 8.42 kcal Atomic # 7 Polarization: -93.23 SS G_CDS: -2.48 Total: -95.71 kcal Atomic # 8 Polarization: -48.04 SS G_CDS: -0.12 Total: -48.16 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 1.68 Total: 42.37 kcal Total: -73.43 7.02 -66.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367201786.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.106 kcal (2) G-P(sol) polarization free energy of solvation -73.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds