Wall clock time and date at job start Sat Apr 11 2020 05:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47033 * 229.47690 * 3 2 1 5 5 C 1.36904 * 120.00033 * 96.44036 * 4 3 2 6 6 H 1.07994 * 120.00314 * 162.63812 * 5 4 3 7 7 C 1.39024 * 119.99679 * 342.62551 * 5 4 3 8 8 N 1.31380 * 120.00519 * 340.92545 * 7 5 4 9 9 Si 1.86805 * 119.99828 * 160.91973 * 7 5 4 10 10 H 1.48503 * 109.46754 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46914 * 120.00045 * 9 7 5 12 12 H 1.48494 * 109.47592 * 240.00581 * 9 7 5 13 13 C 1.34776 * 120.00272 * 276.43720 * 4 3 2 14 14 O 1.21619 * 120.00410 * 186.26832 * 13 4 3 15 15 C 1.47537 * 119.99672 * 6.26694 * 13 4 3 16 16 C 1.41567 * 126.45070 * 181.90693 * 15 13 4 17 17 C 1.35357 * 105.55588 * 179.73694 * 16 15 13 18 18 N 1.35852 * 107.14555 * 0.02562 * 17 16 15 19 19 C 1.40162 * 124.95133 * 180.02562 * 18 17 16 20 20 C 1.38761 * 120.09299 * 359.97438 * 19 18 17 21 21 C 1.38148 * 119.98579 * 180.02562 * 20 19 18 22 22 C 1.50709 * 119.91207 * 179.97438 * 21 20 19 23 23 C 1.38319 * 120.17497 * 0.02562 * 21 20 19 24 24 C 1.38199 * 120.18573 * 0.02562 * 23 21 20 25 25 C 1.38602 * 120.01220 * 359.71947 * 24 23 21 26 26 O 1.35925 * 120.08649 * 180.29915 * 25 24 23 27 27 C 1.42894 * 116.99919 * 0.25453 * 26 25 24 28 28 N 1.28478 * 110.09924 * 359.97438 * 18 17 16 29 29 H 4.40638 * 5.51454 * 179.97438 * 4 1 2 30 30 H 1.08990 * 109.47033 * 109.47585 * 3 2 1 31 31 H 1.09002 * 109.46984 * 349.47913 * 3 2 1 32 32 H 0.97001 * 119.99887 * 179.97438 * 8 7 5 33 33 H 1.07997 * 127.22020 * 359.75380 * 16 15 13 34 34 H 1.07997 * 126.42288 * 180.02562 * 17 16 15 35 35 H 1.08000 * 120.00697 * 0.02562 * 20 19 18 36 36 H 1.08997 * 109.46732 * 90.00064 * 22 21 20 37 37 H 1.08996 * 109.46971 * 210.00027 * 22 21 20 38 38 H 1.09004 * 109.46804 * 330.00183 * 22 21 20 39 39 H 1.07996 * 119.90628 * 179.97438 * 23 21 20 40 40 H 1.07995 * 119.98945 * 180.02562 * 24 23 21 41 41 H 1.09000 * 109.47156 * 180.02562 * 27 26 25 42 42 H 1.08993 * 109.47508 * 300.00041 * 27 26 25 43 43 H 1.09005 * 109.47140 * 59.99898 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1340 0.8983 1.0499 5 6 3.4877 0.3935 2.2723 6 1 4.0989 0.9798 2.9424 7 6 3.0600 -0.8740 2.6511 8 7 2.0398 -1.4328 2.0405 9 14 3.9361 -1.7825 4.0282 10 1 5.0443 -0.9423 4.5489 11 1 2.9746 -2.0672 5.1235 12 1 4.4856 -3.0600 3.5074 13 6 3.2346 2.2212 0.8125 14 8 3.7453 2.9506 1.6409 15 6 2.7254 2.7844 -0.4525 16 6 2.7939 4.1390 -0.8579 17 6 2.2105 4.1825 -2.0786 18 7 1.8165 2.9177 -2.3795 19 6 1.1688 2.5387 -3.5633 20 6 0.8838 3.4874 -4.5349 21 6 0.2448 3.1115 -5.7006 22 6 -0.0644 4.1434 -6.7546 23 6 -0.1129 1.7907 -5.9025 24 6 0.1665 0.8400 -4.9391 25 6 0.8121 1.2077 -3.7690 26 8 1.0930 0.2729 -2.8231 27 6 0.6993 -1.0719 -3.1030 28 7 2.1251 2.1194 -1.4213 29 1 -1.0501 0.0000 -0.0003 30 1 3.0092 0.3434 -0.9688 31 1 3.0098 -1.0096 0.1876 32 1 1.7416 -2.3173 2.3046 33 1 3.2220 4.9645 -0.3087 34 1 2.0824 5.0585 -2.6972 35 1 1.1615 4.5195 -4.3799 36 1 0.7717 4.2138 -7.4503 37 1 -0.9641 3.8513 -7.2961 38 1 -0.2244 5.1113 -6.2795 39 1 -0.6126 1.5016 -6.8152 40 1 -0.1138 -0.1904 -5.1002 41 1 0.9814 -1.7142 -2.2688 42 1 -0.3808 -1.1126 -3.2432 43 1 1.1966 -1.4147 -4.0104 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490963037.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:53 Heat of formation + Delta-G solvation = 133.868739 kcal Electronic energy + Delta-G solvation = -29905.421345 eV Core-core repulsion = 25921.625463 eV Total energy + Delta-G solvation = -3983.795882 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.31515 -40.02188 -38.21301 -37.65024 -35.02501 -33.66709 -31.99642 -31.86359 -30.97811 -30.32252 -29.28364 -27.75818 -26.26351 -25.99966 -25.10526 -23.54432 -22.49991 -20.76099 -20.48741 -18.99825 -18.32787 -17.66848 -17.06469 -16.54254 -16.12604 -15.97364 -15.84098 -15.10365 -14.75932 -14.61714 -14.39673 -14.04807 -13.90880 -13.83620 -13.65129 -13.22102 -12.89025 -12.43716 -12.37081 -12.34283 -12.14852 -12.08584 -12.04147 -11.64268 -11.46966 -11.07722 -10.96539 -10.85446 -10.42906 -10.29740 -9.88619 -9.82754 -9.20702 -9.05829 -8.77936 -8.60439 -8.55976 -8.33911 -7.77347 -7.62830 -6.30406 -3.79176 0.82212 1.19709 2.49884 2.73219 2.78977 3.21664 3.27901 3.35306 3.36655 3.61300 4.01909 4.27435 4.40819 4.45929 4.60049 4.62048 4.78530 4.85213 4.98557 5.06394 5.18531 5.22020 5.26973 5.31235 5.32636 5.37220 5.41524 5.61928 5.69086 5.78273 5.84234 5.94773 5.99797 6.09613 6.24225 6.28036 6.33536 6.49988 6.75558 6.98392 7.02455 7.25581 7.34213 7.55477 7.58375 8.12279 8.43676 8.60183 9.17522 9.22202 9.41252 10.00314 10.68735 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017564 B = 0.003911 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.821334 B = 7156.932684 C = 8484.004466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 C -0.057 4.057 3 C 0.233 3.767 4 N -0.419 5.419 5 C -0.308 4.308 6 H 0.108 0.892 7 C 0.031 3.969 8 N -0.854 5.854 9 Si 0.924 3.076 10 H -0.266 1.266 11 H -0.282 1.282 12 H -0.280 1.280 13 C 0.519 3.481 14 O -0.583 6.583 15 C 0.015 3.985 16 C -0.176 4.176 17 C -0.040 4.040 18 N -0.244 5.244 19 C 0.118 3.882 20 C -0.098 4.098 21 C -0.110 4.110 22 C -0.106 4.106 23 C -0.087 4.087 24 C -0.192 4.192 25 C 0.136 3.864 26 O -0.261 6.261 27 C 0.026 3.974 28 N -0.230 5.230 29 H 0.186 0.814 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.268 0.732 33 H 0.159 0.841 34 H 0.174 0.826 35 H 0.136 0.864 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.127 0.873 40 H 0.136 0.864 41 H 0.106 0.894 42 H 0.051 0.949 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.688 3.569 -19.577 20.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 C -0.059 4.059 3 C 0.110 3.890 4 N -0.136 5.136 5 C -0.437 4.437 6 H 0.125 0.875 7 C -0.174 4.174 8 N -0.491 5.491 9 Si 0.750 3.250 10 H -0.191 1.191 11 H -0.208 1.208 12 H -0.206 1.206 13 C 0.306 3.694 14 O -0.466 6.466 15 C -0.147 4.147 16 C -0.204 4.204 17 C -0.178 4.178 18 N -0.025 5.025 19 C 0.026 3.974 20 C -0.119 4.119 21 C -0.111 4.111 22 C -0.163 4.163 23 C -0.105 4.105 24 C -0.211 4.211 25 C 0.087 3.913 26 O -0.171 6.171 27 C -0.070 4.070 28 N -0.061 5.061 29 H 0.204 0.796 30 H 0.098 0.902 31 H 0.119 0.881 32 H 0.078 0.922 33 H 0.177 0.823 34 H 0.191 0.809 35 H 0.154 0.846 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.145 0.855 40 H 0.154 0.846 41 H 0.124 0.876 42 H 0.070 0.930 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.783 2.658 -19.281 20.305 hybrid contribution -0.060 0.039 0.721 0.724 sum -5.843 2.697 -18.561 19.645 Atomic orbital electron populations 1.23833 0.94954 1.05748 1.06548 1.22579 0.93563 0.95408 0.94342 1.18478 0.85042 0.95912 0.89546 1.43620 1.53640 1.04090 1.12206 1.19803 1.29996 0.99986 0.93869 0.87476 1.25355 0.95292 0.97831 0.98932 1.70123 1.21048 1.16227 1.41715 0.85905 0.79584 0.79165 0.80332 1.19058 1.20847 1.20580 1.16688 0.85697 0.82285 0.84690 1.90609 1.49756 1.58877 1.47381 1.22717 1.03120 0.92742 0.96101 1.21755 1.05580 0.97548 0.95470 1.22796 1.06342 0.89219 0.99461 1.42753 1.41397 1.05728 1.12638 1.16961 1.02531 0.91572 0.86344 1.20506 1.00434 0.98488 0.92450 1.19517 1.01002 0.95007 0.95574 1.20697 1.01777 0.97063 0.96772 1.20850 0.99044 0.92031 0.98609 1.21156 1.04717 1.01091 0.94181 1.18741 0.94953 0.88308 0.89278 1.86620 1.75111 1.16423 1.38959 1.23125 0.99569 0.81620 1.02656 1.74379 1.15430 1.19754 0.96573 0.79640 0.90193 0.88085 0.92150 0.82305 0.80926 0.84627 0.91260 0.91501 0.91549 0.85486 0.84579 0.87551 0.93007 0.93290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.54 18.60 29.55 0.55 -5.99 16 2 C -0.06 -1.36 7.78 -37.12 -0.29 -1.65 16 3 C 0.23 5.67 4.75 -6.83 -0.03 5.64 16 4 N -0.42 -11.43 2.60 -119.12 -0.31 -11.74 16 5 C -0.31 -8.75 9.37 -15.00 -0.14 -8.89 16 6 H 0.11 3.16 7.33 -52.49 -0.38 2.78 16 7 C 0.03 0.82 4.93 -17.45 -0.09 0.73 16 8 N -0.85 -22.57 9.36 55.50 0.52 -22.05 16 9 Si 0.92 20.61 29.59 -169.99 -5.03 15.58 16 10 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 13 C 0.52 14.09 7.56 -12.47 -0.09 13.99 16 14 O -0.58 -17.19 16.56 5.26 0.09 -17.10 16 15 C 0.02 0.35 6.71 -82.76 -0.56 -0.21 16 16 C -0.18 -3.36 10.80 -39.34 -0.42 -3.79 16 17 C -0.04 -0.63 10.78 -16.80 -0.18 -0.81 16 18 N -0.24 -4.35 3.52 -10.45 -0.04 -4.39 16 19 C 0.12 1.79 6.67 -83.45 -0.56 1.23 16 20 C -0.10 -1.12 9.08 -39.42 -0.36 -1.48 16 21 C -0.11 -1.05 5.88 -104.62 -0.62 -1.66 16 22 C -0.11 -0.69 10.01 36.01 0.36 -0.32 16 23 C -0.09 -0.82 9.69 -39.57 -0.38 -1.20 16 24 C -0.19 -2.14 9.03 -39.46 -0.36 -2.50 16 25 C 0.14 2.00 6.69 -39.05 -0.26 1.74 16 26 O -0.26 -4.26 6.16 -19.50 -0.12 -4.38 16 27 C 0.03 0.32 9.36 101.05 0.95 1.27 16 28 N -0.23 -4.87 5.47 33.42 0.18 -4.69 16 29 H 0.19 3.61 7.80 -54.09 -0.42 3.19 16 30 H 0.08 1.86 5.75 -51.93 -0.30 1.56 16 31 H 0.10 2.53 6.31 -51.93 -0.33 2.20 16 32 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 33 H 0.16 2.78 8.06 -52.49 -0.42 2.36 16 34 H 0.17 1.89 6.96 -52.49 -0.37 1.52 16 35 H 0.14 1.25 6.65 -52.49 -0.35 0.90 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 38 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 39 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 40 H 0.14 1.22 6.30 -52.49 -0.33 0.89 16 41 H 0.11 1.44 7.93 -51.93 -0.41 1.03 16 42 H 0.05 0.56 7.65 -51.93 -0.40 0.16 16 43 H 0.05 0.49 7.67 -51.93 -0.40 0.09 16 LS Contribution 361.35 15.07 5.45 5.45 Total: -1.00 -34.37 361.35 -6.67 -41.04 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -4.93 Total: 6.20 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -2.48 Total: -3.90 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: 0.36 Total: -42.87 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.03 Total: -21.49 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.03 Total: 15.58 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.37 -6.67 -41.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490963037.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.904 kcal (2) G-P(sol) polarization free energy of solvation -34.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds