Wall clock time and date at job start Sat Apr 11 2020 05:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 120.00172 * 2 1 4 4 H 1.48497 * 109.46969 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47054 * 300.00342 * 3 2 1 6 6 H 1.48497 * 109.47067 * 60.00069 * 3 2 1 7 7 C 1.37875 * 120.00124 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00191 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99905 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47377 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47205 * 180.02562 * 10 9 7 12 12 H 1.08993 * 109.47197 * 54.99753 * 11 10 9 13 13 N 1.46904 * 109.46786 * 294.99447 * 11 10 9 14 14 C 1.50704 * 109.46936 * 174.99945 * 11 10 9 15 15 O 1.21278 * 119.99801 * 99.99973 * 14 11 10 16 16 N 1.34773 * 119.99949 * 279.99606 * 14 11 10 17 17 C 1.39400 * 120.00128 * 174.91928 * 16 14 11 18 18 C 1.39038 * 119.69975 * 185.06818 * 17 16 14 19 19 C 1.38358 * 119.10591 * 179.97438 * 18 17 16 20 20 C 1.50696 * 120.75592 * 179.97438 * 19 18 17 21 21 S 1.81395 * 109.47459 * 90.00046 * 20 19 18 22 22 C 1.81396 * 103.00574 * 180.02562 * 21 20 19 23 23 C 1.52998 * 109.47513 * 180.02562 * 22 21 20 24 24 O 1.42901 * 109.46967 * 179.97438 * 23 22 21 25 25 C 1.38838 * 118.49358 * 0.02562 * 19 18 17 26 26 C 1.38076 * 119.31173 * 359.97438 * 25 19 18 27 27 N 1.31935 * 120.84627 * 359.72467 * 26 25 19 28 28 H 0.96998 * 119.99522 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47443 * 59.99899 * 9 7 2 30 30 H 1.09009 * 109.47219 * 300.00262 * 9 7 2 31 31 H 1.08996 * 109.47157 * 60.00119 * 10 9 7 32 32 H 1.08999 * 109.46854 * 300.00117 * 10 9 7 33 33 H 1.00894 * 110.99929 * 176.04830 * 13 11 10 34 34 H 1.00898 * 111.00375 * 300.00062 * 13 11 10 35 35 H 0.96998 * 119.99817 * 354.91639 * 16 14 11 36 36 H 1.08006 * 120.44488 * 0.02562 * 18 17 16 37 37 H 1.09000 * 109.47470 * 210.00750 * 20 19 18 38 38 H 1.09006 * 109.47108 * 330.00426 * 20 19 18 39 39 H 1.09002 * 109.46761 * 300.00351 * 22 21 20 40 40 H 1.09006 * 109.47138 * 59.99705 * 22 21 20 41 41 H 1.08999 * 109.46481 * 299.99895 * 23 22 21 42 42 H 1.08999 * 109.47061 * 59.99837 * 23 22 21 43 43 H 0.96703 * 113.99353 * 180.02562 * 24 23 22 44 44 H 1.07998 * 120.34994 * 180.02562 * 25 19 18 45 45 H 1.07999 * 119.58107 * 180.02562 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 1 0.7884 -5.0068 -0.8431 13 7 0.7282 -5.1188 1.2539 14 6 2.4550 -6.1298 -0.1250 15 8 2.7864 -6.7536 0.8608 16 7 2.9582 -6.4586 -1.3313 17 6 3.9385 -7.4444 -1.4324 18 6 4.5290 -7.7050 -2.6639 19 6 5.5011 -8.6857 -2.7502 20 6 6.1650 -8.9991 -4.0662 21 16 7.6376 -7.9585 -4.2636 22 6 8.2871 -8.4721 -5.8775 23 6 9.5526 -7.6733 -6.1958 24 8 10.0645 -8.0785 -7.4669 25 6 5.8503 -9.3754 -1.5969 26 6 5.2226 -9.0644 -0.4071 27 7 4.3030 -8.1198 -0.3541 28 1 -0.4849 0.8401 -0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8897 31 1 2.8719 -3.6044 0.8894 32 1 2.8720 -3.6043 -0.8905 33 1 0.1639 -5.9552 1.2511 34 1 1.3478 -5.1034 2.0501 35 1 2.6381 -6.0092 -2.1291 36 1 4.2334 -7.1487 -3.5413 37 1 6.4569 -10.0491 -4.0850 38 1 5.4684 -8.8011 -4.8809 39 1 8.5259 -9.5353 -5.8514 40 1 7.5371 -8.2870 -6.6466 41 1 9.3141 -6.6101 -6.2218 42 1 10.3023 -7.8589 -5.4267 43 1 10.8688 -7.6125 -7.7336 44 1 6.6057 -10.1466 -1.6299 45 1 5.4911 -9.5979 0.4927 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000516968743.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:11 Heat of formation + Delta-G solvation = -51.485796 kcal Electronic energy + Delta-G solvation = -25572.949294 eV Core-core repulsion = 21716.559788 eV Total energy + Delta-G solvation = -3856.389506 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.95777 -39.34106 -37.51952 -35.53072 -34.96418 -34.03342 -32.80746 -31.53049 -30.38929 -30.07666 -28.46303 -26.55855 -24.28270 -23.81378 -23.31504 -22.14244 -20.49235 -19.83554 -18.28308 -18.01118 -17.29428 -16.55220 -16.25581 -16.18318 -16.12473 -15.93735 -15.45025 -15.24594 -14.92722 -14.76039 -14.49138 -14.23118 -14.02858 -13.67784 -13.54395 -13.36196 -12.94296 -12.85516 -12.34545 -12.19113 -12.07910 -12.03133 -11.58945 -10.92489 -10.88788 -10.72651 -10.61684 -10.60102 -10.53522 -10.30772 -9.83268 -9.74555 -9.47025 -9.29786 -8.99357 -8.43389 -8.36430 -8.22782 -8.16720 -5.94720 -3.96742 0.48443 0.91790 1.46556 2.04050 2.72038 2.85351 3.33712 3.41411 3.45530 3.74838 3.80654 4.00832 4.23580 4.31264 4.40000 4.50211 4.50820 4.73766 4.81568 4.83059 4.83844 4.97753 4.99705 5.12409 5.17015 5.20134 5.40816 5.45427 5.46443 5.57202 5.76756 5.92917 6.11044 6.39157 6.57284 6.64889 7.00783 7.02419 7.11750 7.40934 7.74067 7.75701 7.91451 7.95227 8.11511 8.27791 8.47401 9.11328 9.66584 11.16157 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009446 B = 0.002237 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2963.409617 B =12514.343682 C =15015.338451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.057 3.943 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.052 0.948 9 C 0.031 3.969 10 C -0.096 4.096 11 C 0.081 3.919 12 H 0.100 0.900 13 N -0.805 5.805 14 C 0.473 3.527 15 O -0.483 6.483 16 N -0.661 5.661 17 C 0.369 3.631 18 C -0.192 4.192 19 C -0.008 4.008 20 C -0.045 4.045 21 S -0.223 6.223 22 C -0.099 4.099 23 C 0.093 3.907 24 O -0.573 6.573 25 C -0.194 4.194 26 C 0.134 3.866 27 N -0.473 5.473 28 H 0.259 0.741 29 H 0.014 0.986 30 H 0.036 0.964 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.335 0.665 34 H 0.349 0.651 35 H 0.420 0.580 36 H 0.139 0.861 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.386 0.614 44 H 0.135 0.865 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.174 -22.286 -12.557 29.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.071 0.929 9 C -0.006 4.006 10 C -0.134 4.134 11 C -0.035 4.035 12 H 0.118 0.882 13 N -0.333 5.333 14 C 0.258 3.742 15 O -0.352 6.352 16 N -0.308 5.308 17 C 0.137 3.863 18 C -0.218 4.218 19 C -0.017 4.017 20 C -0.193 4.193 21 S 0.005 5.995 22 C -0.247 4.247 23 C 0.014 3.986 24 O -0.379 6.379 25 C -0.217 4.217 26 C -0.024 4.024 27 N -0.188 5.188 28 H 0.068 0.932 29 H 0.032 0.968 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.147 0.853 34 H 0.163 0.837 35 H 0.257 0.743 36 H 0.156 0.844 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.234 0.766 44 H 0.153 0.847 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 14.328 -21.258 -10.490 27.699 hybrid contribution 1.314 -0.474 -2.029 2.463 sum 15.642 -21.732 -12.520 29.559 Atomic orbital electron populations 1.69985 1.05934 1.26314 1.50928 1.24996 0.94819 0.99087 0.95485 0.86591 0.80127 0.84066 0.77531 1.19845 1.21104 1.21045 1.21307 0.92948 0.91275 1.50458 0.92923 1.19028 0.93526 0.89779 0.98279 1.21685 0.98902 0.92007 1.00854 1.21899 0.93332 0.92861 0.95389 0.88190 1.59003 1.26783 1.44330 1.03172 1.23188 0.82662 0.86015 0.82298 1.90755 1.57231 1.51246 1.36012 1.44018 1.38146 1.36722 1.11887 1.18583 0.89193 0.89097 0.89380 1.21348 1.00751 1.01808 0.97886 1.19192 0.94183 0.94683 0.93655 1.22275 0.97085 1.01929 0.97995 1.87251 1.32154 1.55602 1.24493 1.23271 1.00438 1.03717 0.97303 1.21707 0.93875 0.97500 0.85535 1.86431 1.47401 1.67592 1.36522 1.21891 1.03375 1.03324 0.93129 1.22680 0.90239 0.92118 0.97356 1.67719 1.14856 1.07105 1.29089 0.93152 0.96801 0.94589 0.92699 0.92774 0.85300 0.83650 0.74314 0.84358 0.88397 0.88432 0.89263 0.89162 0.92357 0.92495 0.76573 0.84684 0.82313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.52 -14.68 9.11 -34.44 -0.31 -15.00 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.03 0.78 4.86 -27.88 -0.14 0.65 16 10 C -0.10 -1.92 4.78 -26.73 -0.13 -2.05 16 11 C 0.08 1.33 3.15 -68.86 -0.22 1.11 16 12 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 13 N -0.81 -13.34 8.44 -5.65 -0.05 -13.39 16 14 C 0.47 7.55 7.03 -10.98 -0.08 7.47 16 15 O -0.48 -9.12 14.51 5.56 0.08 -9.04 16 16 N -0.66 -8.66 5.39 -11.42 -0.06 -8.72 16 17 C 0.37 4.96 7.42 -154.71 -1.15 3.81 16 18 C -0.19 -2.00 9.64 -39.24 -0.38 -2.37 16 19 C -0.01 -0.07 5.17 -104.36 -0.54 -0.61 16 20 C -0.05 -0.31 6.11 36.00 0.22 -0.09 16 21 S -0.22 -1.83 21.72 -107.50 -2.33 -4.17 16 22 C -0.10 -0.65 6.31 37.16 0.23 -0.41 16 23 C 0.09 0.57 7.05 37.16 0.26 0.83 16 24 O -0.57 -3.65 13.66 -35.23 -0.48 -4.13 16 25 C -0.19 -1.77 9.81 -39.42 -0.39 -2.16 16 26 C 0.13 1.53 11.18 -17.57 -0.20 1.33 16 27 N -0.47 -7.09 7.89 -12.37 -0.10 -7.18 16 28 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.04 0.98 7.75 -51.92 -0.40 0.58 16 31 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.34 4.81 9.06 -39.29 -0.36 4.45 16 34 H 0.35 5.92 8.58 -39.29 -0.34 5.58 16 35 H 0.42 4.16 8.70 -40.82 -0.36 3.80 16 36 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 37 H 0.10 0.50 8.10 -51.92 -0.42 0.08 16 38 H 0.10 0.54 8.10 -51.92 -0.42 0.12 16 39 H 0.09 0.54 8.14 -51.92 -0.42 0.12 16 40 H 0.09 0.58 8.14 -51.92 -0.42 0.15 16 41 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.39 0.73 9.12 45.56 0.42 1.15 16 44 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 45 H 0.16 1.42 8.06 -52.49 -0.42 0.99 16 LS Contribution 397.62 15.07 5.99 5.99 Total: -1.00 -36.48 397.62 -10.20 -46.69 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -6.07 Total: 9.22 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -2.90 Total: -5.94 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: 0.53 Total: -55.34 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: -0.40 Total: -13.17 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: -1.83 SS G_CDS: -2.33 Total: -4.17 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.48 -10.20 -46.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516968743.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.800 kcal (2) G-P(sol) polarization free energy of solvation -36.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds