Wall clock time and date at job start Sat Apr 11 2020 05:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 120.00172 * 2 1 4 4 H 1.48497 * 109.46969 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47054 * 300.00342 * 3 2 1 6 6 H 1.48497 * 109.47067 * 60.00069 * 3 2 1 7 7 C 1.37875 * 120.00124 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00191 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99905 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47377 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47205 * 180.02562 * 10 9 7 12 12 H 1.08993 * 109.47197 * 54.99753 * 11 10 9 13 13 N 1.46904 * 109.46786 * 294.99447 * 11 10 9 14 14 C 1.50704 * 109.46936 * 174.99945 * 11 10 9 15 15 O 1.21278 * 119.99801 * 99.99973 * 14 11 10 16 16 N 1.34773 * 119.99949 * 279.99606 * 14 11 10 17 17 C 1.39400 * 120.00128 * 174.91928 * 16 14 11 18 18 C 1.39038 * 119.69975 * 185.06818 * 17 16 14 19 19 C 1.38358 * 119.10591 * 179.97438 * 18 17 16 20 20 C 1.50696 * 120.75592 * 179.97438 * 19 18 17 21 21 S 1.81395 * 109.47459 * 90.00046 * 20 19 18 22 22 C 1.81396 * 103.00574 * 180.02562 * 21 20 19 23 23 C 1.52998 * 109.47513 * 180.02562 * 22 21 20 24 24 O 1.42901 * 109.46967 * 179.97438 * 23 22 21 25 25 C 1.38838 * 118.49358 * 0.02562 * 19 18 17 26 26 C 1.38076 * 119.31173 * 359.97438 * 25 19 18 27 27 N 1.31935 * 120.84627 * 359.72467 * 26 25 19 28 28 H 0.96998 * 119.99522 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47443 * 59.99899 * 9 7 2 30 30 H 1.09009 * 109.47219 * 300.00262 * 9 7 2 31 31 H 1.08996 * 109.47157 * 60.00119 * 10 9 7 32 32 H 1.08999 * 109.46854 * 300.00117 * 10 9 7 33 33 H 1.00894 * 110.99929 * 176.04830 * 13 11 10 34 34 H 1.00898 * 111.00375 * 300.00062 * 13 11 10 35 35 H 0.96998 * 119.99817 * 354.91639 * 16 14 11 36 36 H 1.08006 * 120.44488 * 0.02562 * 18 17 16 37 37 H 1.09000 * 109.47470 * 210.00750 * 20 19 18 38 38 H 1.09006 * 109.47108 * 330.00426 * 20 19 18 39 39 H 1.09002 * 109.46761 * 300.00351 * 22 21 20 40 40 H 1.09006 * 109.47138 * 59.99705 * 22 21 20 41 41 H 1.08999 * 109.46481 * 299.99895 * 23 22 21 42 42 H 1.08999 * 109.47061 * 59.99837 * 23 22 21 43 43 H 0.96703 * 113.99353 * 180.02562 * 24 23 22 44 44 H 1.07998 * 120.34994 * 180.02562 * 25 19 18 45 45 H 1.07999 * 119.58107 * 180.02562 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 1 0.7884 -5.0068 -0.8431 13 7 0.7282 -5.1188 1.2539 14 6 2.4550 -6.1298 -0.1250 15 8 2.7864 -6.7536 0.8608 16 7 2.9582 -6.4586 -1.3313 17 6 3.9385 -7.4444 -1.4324 18 6 4.5290 -7.7050 -2.6639 19 6 5.5011 -8.6857 -2.7502 20 6 6.1650 -8.9991 -4.0662 21 16 7.6376 -7.9585 -4.2636 22 6 8.2871 -8.4721 -5.8775 23 6 9.5526 -7.6733 -6.1958 24 8 10.0645 -8.0785 -7.4669 25 6 5.8503 -9.3754 -1.5969 26 6 5.2226 -9.0644 -0.4071 27 7 4.3030 -8.1198 -0.3541 28 1 -0.4849 0.8401 -0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8897 31 1 2.8719 -3.6044 0.8894 32 1 2.8720 -3.6043 -0.8905 33 1 0.1639 -5.9552 1.2511 34 1 1.3478 -5.1034 2.0501 35 1 2.6381 -6.0092 -2.1291 36 1 4.2334 -7.1487 -3.5413 37 1 6.4569 -10.0491 -4.0850 38 1 5.4684 -8.8011 -4.8809 39 1 8.5259 -9.5353 -5.8514 40 1 7.5371 -8.2870 -6.6466 41 1 9.3141 -6.6101 -6.2218 42 1 10.3023 -7.8589 -5.4267 43 1 10.8688 -7.6125 -7.7336 44 1 6.6057 -10.1466 -1.6299 45 1 5.4911 -9.5979 0.4927 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000516968743.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:10 Heat of formation + Delta-G solvation = -79.121180 kcal Electronic energy + Delta-G solvation = -25574.147654 eV Core-core repulsion = 21716.559788 eV Total energy + Delta-G solvation = -3857.587866 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.94150 -40.43770 -37.95451 -36.91711 -36.17304 -34.90404 -34.74805 -31.99529 -31.94455 -31.25039 -29.13393 -28.20347 -25.87457 -24.51432 -24.06210 -23.32295 -22.02359 -21.06037 -19.13608 -18.71476 -18.45250 -18.17610 -17.21046 -17.15815 -16.83454 -16.70563 -16.54784 -16.49463 -16.25670 -15.79334 -15.40152 -15.32502 -15.03775 -14.85163 -14.33648 -14.25698 -14.22488 -13.83358 -13.53940 -13.42485 -13.40082 -12.86671 -12.82546 -12.53827 -12.51163 -12.27218 -11.86012 -11.79586 -11.67546 -11.29272 -11.22740 -11.04651 -11.03139 -10.50133 -10.49422 -10.31642 -9.60891 -9.32854 -8.76856 -8.13809 -6.23587 -0.18678 0.06017 0.82148 1.41266 1.42371 1.46230 1.54628 1.58615 1.84269 2.44652 2.90083 3.19277 3.28678 3.40153 3.43209 3.58024 3.71815 3.86692 3.96578 4.07723 4.08037 4.09623 4.09871 4.28530 4.38749 4.41024 4.46748 4.68019 4.73033 4.75699 4.76134 4.78826 4.92992 5.16507 5.23717 5.27009 5.57776 5.72849 5.84919 5.99002 6.02480 6.18926 6.30819 6.48626 6.78058 6.89464 6.94989 7.26322 7.44351 8.97436 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009446 B = 0.002237 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2963.409617 B =12514.343682 C =15015.338451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.001 3.999 3 Si 0.959 3.041 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.281 1.281 7 C -0.542 4.542 8 H 0.053 0.947 9 C 0.039 3.961 10 C -0.082 4.082 11 C 0.091 3.909 12 H 0.118 0.882 13 N -0.816 5.816 14 C 0.481 3.519 15 O -0.517 6.517 16 N -0.651 5.651 17 C 0.338 3.662 18 C -0.185 4.185 19 C -0.009 4.009 20 C -0.035 4.035 21 S -0.265 6.265 22 C -0.088 4.088 23 C 0.092 3.908 24 O -0.589 6.589 25 C -0.178 4.178 26 C 0.114 3.886 27 N -0.518 5.518 28 H 0.262 0.738 29 H -0.002 1.002 30 H 0.007 0.993 31 H 0.040 0.960 32 H 0.067 0.933 33 H 0.348 0.652 34 H 0.345 0.655 35 H 0.433 0.567 36 H 0.161 0.839 37 H 0.119 0.881 38 H 0.113 0.887 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.404 0.596 44 H 0.165 0.835 45 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.898 -23.185 -14.470 32.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.784 3.216 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.207 1.207 7 C -0.580 4.580 8 H 0.072 0.928 9 C 0.002 3.998 10 C -0.120 4.120 11 C -0.025 4.025 12 H 0.136 0.864 13 N -0.345 5.345 14 C 0.266 3.734 15 O -0.389 6.389 16 N -0.300 5.300 17 C 0.107 3.893 18 C -0.210 4.210 19 C -0.019 4.019 20 C -0.182 4.182 21 S -0.037 6.037 22 C -0.236 4.236 23 C 0.014 3.986 24 O -0.398 6.398 25 C -0.201 4.201 26 C -0.043 4.043 27 N -0.233 5.233 28 H 0.071 0.929 29 H 0.017 0.983 30 H 0.025 0.975 31 H 0.058 0.942 32 H 0.086 0.914 33 H 0.161 0.839 34 H 0.159 0.841 35 H 0.273 0.727 36 H 0.178 0.822 37 H 0.138 0.862 38 H 0.131 0.869 39 H 0.114 0.886 40 H 0.110 0.890 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.255 0.745 44 H 0.183 0.817 45 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 16.081 -22.175 -12.453 30.090 hybrid contribution 0.853 -0.279 -1.498 1.746 sum 16.933 -22.454 -13.951 31.394 Atomic orbital electron populations 1.70107 1.07531 1.27424 1.51805 1.25888 0.95726 1.02970 0.95056 0.85497 0.79015 0.79370 0.77734 1.18973 1.20186 1.20711 1.21742 0.93277 0.92777 1.50218 0.92830 1.18836 0.93829 0.91114 0.96018 1.21400 0.97776 0.92098 1.00775 1.21681 0.93470 0.91392 0.95985 0.86413 1.58994 1.27039 1.45292 1.03174 1.22826 0.82261 0.85571 0.82780 1.90740 1.58347 1.52459 1.37342 1.43773 1.37966 1.36808 1.11416 1.18798 0.90253 0.89892 0.90362 1.21581 1.00256 1.01814 0.97360 1.19504 0.93634 0.93920 0.94839 1.22296 0.96309 1.02665 0.96941 1.87407 1.33389 1.56701 1.26203 1.23225 1.00502 1.04001 0.95854 1.21697 0.93923 0.97368 0.85648 1.86381 1.48662 1.68257 1.36538 1.22212 1.02642 1.03026 0.92200 1.23033 0.90227 0.91987 0.99057 1.67589 1.16505 1.08578 1.30671 0.92929 0.98331 0.97467 0.94164 0.91414 0.83892 0.84089 0.72718 0.82186 0.86241 0.86861 0.88618 0.88962 0.92497 0.92149 0.74533 0.81723 0.80910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.45 13.29 21.45 0.28 -56.16 16 2 C 0.00 0.08 5.46 84.65 0.46 0.54 16 3 Si 0.96 44.62 29.54 68.60 2.03 46.65 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 7 C -0.54 -30.82 9.11 25.60 0.23 -30.59 16 8 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 9 C 0.04 2.02 4.86 29.85 0.15 2.17 16 10 C -0.08 -3.31 4.78 30.60 0.15 -3.16 16 11 C 0.09 2.98 3.15 44.17 0.14 3.12 16 12 H 0.12 3.42 8.14 -2.39 -0.02 3.40 16 13 N -0.82 -27.58 8.44 -171.79 -1.45 -29.03 16 14 C 0.48 15.36 7.03 87.66 0.62 15.97 16 15 O -0.52 -19.88 14.51 -3.02 -0.04 -19.93 16 16 N -0.65 -16.69 5.39 -308.45 -1.66 -18.35 16 17 C 0.34 8.83 7.42 132.92 0.99 9.81 16 18 C -0.19 -3.49 9.64 22.49 0.22 -3.27 16 19 C -0.01 -0.15 5.17 -19.69 -0.10 -0.25 16 20 C -0.03 -0.36 6.11 71.23 0.44 0.08 16 21 S -0.26 -3.77 21.72 -56.49 -1.23 -4.99 16 22 C -0.09 -0.95 6.31 71.98 0.45 -0.49 16 23 C 0.09 0.98 7.05 71.98 0.51 1.48 16 24 O -0.59 -6.43 13.66 -148.98 -2.04 -8.47 16 25 C -0.18 -2.84 9.81 22.37 0.22 -2.62 16 26 C 0.11 2.50 11.18 84.64 0.95 3.44 16 27 N -0.52 -15.47 7.89 -193.04 -1.52 -17.00 16 28 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 29 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 30 H 0.01 0.39 7.75 -2.38 -0.02 0.38 16 31 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 33 H 0.35 10.08 9.06 -89.70 -0.81 9.27 16 34 H 0.35 12.10 8.58 -89.70 -0.77 11.33 16 35 H 0.43 8.08 8.70 -92.71 -0.81 7.27 16 36 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 37 H 0.12 0.75 8.10 -2.39 -0.02 0.73 16 38 H 0.11 0.84 8.10 -2.39 -0.02 0.83 16 39 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.40 0.85 9.12 -74.06 -0.68 0.18 16 44 H 0.17 1.58 8.06 -2.91 -0.02 1.55 16 45 H 0.17 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -79.62 397.62 -2.24 -81.86 By element: Atomic # 1 Polarization: 31.19 SS G_CDS: -2.02 Total: 29.17 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: 5.41 Total: -3.76 kcal Atomic # 7 Polarization: -116.19 SS G_CDS: -4.35 Total: -120.54 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -2.08 Total: -28.39 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Atomic # 16 Polarization: -3.77 SS G_CDS: -1.23 Total: -4.99 kcal Total: -79.62 -2.24 -81.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516968743.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.738 kcal (2) G-P(sol) polarization free energy of solvation -79.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds