Wall clock time and date at job start Sat Apr 11 2020 05:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86798 * 119.99732 * 2 1 4 4 H 1.48499 * 109.46907 * 240.00195 * 3 2 1 5 5 H 1.48503 * 109.47187 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47275 * 119.99711 * 3 2 1 7 7 C 1.40024 * 120.00269 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00138 * 162.84249 * 7 2 1 9 9 C 1.41547 * 120.00141 * 342.84547 * 7 2 1 10 10 C 1.41176 * 120.99908 * 156.60482 * 9 7 2 11 11 C 1.37583 * 119.01944 * 179.97438 * 10 9 7 12 12 N 1.32093 * 121.10697 * 359.97438 * 11 10 9 13 13 C 1.32467 * 122.22974 * 0.02562 * 12 11 10 14 14 N 1.39471 * 119.57835 * 180.02562 * 13 12 11 15 15 C 1.34778 * 119.99708 * 4.64984 * 14 13 12 16 16 O 1.21278 * 120.00369 * 355.17061 * 15 14 13 17 17 C 1.50708 * 119.99832 * 175.16359 * 15 14 13 18 18 H 1.09002 * 110.43160 * 61.09202 * 17 15 14 19 19 C 1.54805 * 110.48919 * 298.55133 * 17 15 14 20 20 C 1.54996 * 102.09257 * 262.20494 * 19 17 15 21 21 O 1.44386 * 103.48837 * 322.97447 * 20 19 17 22 22 C 1.43741 * 106.97338 * 40.06157 * 21 20 19 23 23 H 1.09004 * 109.87889 * 92.90790 * 22 21 20 24 24 C 1.50700 * 109.87809 * 214.06081 * 22 21 20 25 25 C 1.38644 * 120.78751 * 37.55308 * 24 22 21 26 26 C 1.38203 * 119.16186 * 179.79641 * 25 24 22 27 27 N 1.31876 * 120.76425 * 0.48609 * 26 25 24 28 28 C 1.31867 * 121.72463 * 359.74380 * 27 26 25 29 29 C 1.38207 * 120.76367 * 0.02562 * 28 27 26 30 30 C 1.38594 * 120.84243 * 359.74072 * 13 12 11 31 31 H 0.96996 * 120.00432 * 359.97438 * 1 2 3 32 32 H 1.08001 * 120.48978 * 0.02562 * 10 9 7 33 33 H 1.07999 * 119.44979 * 180.02562 * 11 10 9 34 34 H 0.96997 * 120.00439 * 184.66010 * 14 13 12 35 35 H 1.09001 * 110.90739 * 20.39754 * 19 17 15 36 36 H 1.08999 * 110.90925 * 143.96860 * 19 17 15 37 37 H 1.09002 * 110.62123 * 81.47373 * 20 19 17 38 38 H 1.09001 * 110.61767 * 204.47706 * 20 19 17 39 39 H 1.08001 * 120.42228 * 0.02562 * 25 24 22 40 40 H 1.08002 * 119.62082 * 180.25180 * 26 25 24 41 41 H 1.07999 * 119.62064 * 179.97438 * 28 27 26 42 42 H 1.08002 * 120.42063 * 179.97438 * 29 28 27 43 43 H 1.07997 * 120.60254 * 180.26986 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0951 1.6964 -1.2125 5 1 1.2763 2.7465 -0.0006 6 1 3.0951 1.6965 1.2125 7 6 2.0077 -1.2126 0.0005 8 1 3.0516 -1.2335 -0.2754 9 6 1.3472 -2.4111 0.3626 10 6 1.8258 -3.6654 -0.0740 11 6 1.1524 -4.8046 0.3026 12 7 0.0733 -4.7400 1.0616 13 6 -0.4161 -3.5887 1.4974 14 7 -1.5590 -3.5849 2.2967 15 6 -2.1041 -4.7502 2.6986 16 8 -1.6541 -5.8014 2.2946 17 6 -3.2728 -4.7468 3.6501 18 1 -4.1226 -4.2275 3.2072 19 6 -2.8757 -4.0883 4.9937 20 6 -2.5549 -5.3208 5.8771 21 8 -3.5358 -6.2962 5.4634 22 6 -3.6588 -6.1881 4.0354 23 1 -2.9847 -6.8944 3.5508 24 6 -5.0808 -6.4659 3.6210 25 6 -6.1441 -6.0296 4.3965 26 6 -7.4348 -6.2993 3.9825 27 7 -7.6600 -6.9708 2.8701 28 6 -6.6734 -7.4050 2.1105 29 6 -5.3569 -7.1689 2.4582 30 6 0.1966 -2.3883 1.1741 31 1 -0.4850 0.8400 0.0004 32 1 2.7078 -3.7299 -0.6939 33 1 1.5126 -5.7678 -0.0271 34 1 -1.9617 -2.7437 2.5632 35 1 -1.9954 -3.4571 4.8723 36 1 -3.7070 -3.5179 5.4080 37 1 -1.5461 -5.6831 5.6788 38 1 -2.6762 -5.0784 6.9328 39 1 -5.9661 -5.4828 5.3107 40 1 -8.2687 -5.9594 4.5789 41 1 -6.8968 -7.9521 1.2065 42 1 -4.5531 -7.5273 1.8322 43 1 -0.2031 -1.4523 1.5351 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593093923.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:47 Heat of formation + Delta-G solvation = -4.242173 kcal Electronic energy + Delta-G solvation = -28464.919606 eV Core-core repulsion = 24475.134785 eV Total energy + Delta-G solvation = -3989.784820 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -40.98251 -39.85659 -38.83982 -37.57122 -34.48387 -33.90981 -33.41281 -32.36972 -31.31272 -30.62356 -28.99330 -28.47665 -26.09014 -24.64935 -23.64812 -22.71304 -22.11379 -21.97676 -20.93545 -19.61564 -17.83150 -17.75093 -17.24134 -16.48998 -15.84541 -15.75549 -15.68677 -15.44269 -15.16395 -14.80161 -14.44388 -14.29642 -14.07818 -13.99938 -13.70631 -13.57494 -13.18813 -12.98137 -12.68950 -12.51028 -12.09390 -11.98399 -11.72988 -11.52225 -11.45665 -11.29349 -11.23847 -10.97792 -10.38370 -10.26485 -10.08720 -9.86553 -9.75016 -9.59957 -9.43437 -9.36765 -9.26744 -8.10181 -7.82531 -7.15282 -6.90202 -4.69807 1.02038 1.05362 2.40939 2.72326 2.95092 2.97682 3.09380 3.30179 3.34595 3.51889 3.77618 3.86064 4.22727 4.33965 4.34478 4.57386 4.66023 4.70139 4.77654 4.97165 5.01648 5.08002 5.12493 5.26802 5.48161 5.50704 5.58220 5.59467 5.63717 5.70706 5.78088 5.86994 5.90361 6.21653 6.48098 6.53038 6.56465 6.64752 6.72233 6.85138 7.01062 7.29001 7.35116 7.65019 7.81865 7.82934 8.10093 8.31421 8.59107 8.65260 8.73260 9.58632 9.97224 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016340 B = 0.002609 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.149981 B =10731.498171 C =10866.778456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.079 3.921 3 Si 0.912 3.088 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.455 4.455 8 H 0.083 0.917 9 C 0.144 3.856 10 C -0.284 4.284 11 C 0.120 3.880 12 N -0.556 5.556 13 C 0.335 3.665 14 N -0.654 5.654 15 C 0.507 3.493 16 O -0.475 6.475 17 C -0.138 4.138 18 H 0.110 0.890 19 C -0.147 4.147 20 C 0.047 3.953 21 O -0.365 6.365 22 C 0.126 3.874 23 H 0.110 0.890 24 C -0.040 4.040 25 C -0.150 4.150 26 C 0.092 3.908 27 N -0.487 5.487 28 C 0.097 3.903 29 C -0.156 4.156 30 C -0.243 4.243 31 H 0.283 0.717 32 H 0.102 0.898 33 H 0.124 0.876 34 H 0.408 0.592 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.067 0.933 38 H 0.099 0.901 39 H 0.137 0.863 40 H 0.155 0.845 41 H 0.157 0.843 42 H 0.140 0.860 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.908 -4.007 9.686 14.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.141 4.141 3 Si 0.736 3.264 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.486 4.486 8 H 0.101 0.899 9 C 0.135 3.865 10 C -0.308 4.308 11 C -0.034 4.034 12 N -0.275 5.275 13 C 0.111 3.889 14 N -0.299 5.299 15 C 0.291 3.709 16 O -0.346 6.346 17 C -0.160 4.160 18 H 0.128 0.872 19 C -0.185 4.185 20 C -0.030 4.030 21 O -0.284 6.284 22 C 0.068 3.932 23 H 0.128 0.872 24 C -0.048 4.048 25 C -0.170 4.170 26 C -0.065 4.065 27 N -0.196 5.196 28 C -0.060 4.060 29 C -0.176 4.176 30 C -0.269 4.269 31 H 0.094 0.906 32 H 0.121 0.879 33 H 0.142 0.858 34 H 0.243 0.757 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.085 0.915 38 H 0.117 0.883 39 H 0.155 0.845 40 H 0.172 0.828 41 H 0.174 0.826 42 H 0.158 0.842 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -11.241 -5.761 9.544 15.831 hybrid contribution 1.559 2.518 -0.135 2.965 sum -9.682 -3.243 9.409 13.884 Atomic orbital electron populations 1.69767 1.07723 1.29619 1.34051 1.25964 0.94771 1.01542 0.91793 0.86303 0.80162 0.79763 0.80194 1.18810 1.20206 1.18667 1.19561 0.98048 0.90750 1.40200 0.89933 1.17558 0.89826 0.92279 0.86817 1.21901 1.05285 0.93844 1.09737 1.21759 0.90969 0.96863 0.93856 1.67203 1.15702 1.26410 1.18177 1.18161 0.87237 0.90958 0.92591 1.43372 1.27446 1.08805 1.50305 1.20175 0.84110 0.84583 0.82012 1.90769 1.60025 1.30167 1.53602 1.22710 0.98691 0.97609 0.97000 0.87154 1.23199 1.03287 0.98755 0.93219 1.23603 0.93017 0.86925 0.99412 1.88885 1.60936 1.58613 1.19993 1.21612 0.92882 0.96015 0.82723 0.87241 1.20207 0.94883 0.95360 0.94384 1.21985 0.93028 1.01070 1.00869 1.22754 0.95969 0.94736 0.93056 1.67659 1.36791 1.09815 1.05378 1.22742 0.88197 0.96632 0.98424 1.22113 0.98901 0.99186 0.97402 1.21525 1.02504 0.95535 1.07306 0.90588 0.87937 0.85845 0.75689 0.89096 0.89268 0.91475 0.88336 0.84509 0.82797 0.82559 0.84185 0.85497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.69 10.93 55.55 0.61 -18.08 16 2 C 0.08 1.84 5.19 -17.34 -0.09 1.75 16 3 Si 0.91 17.31 29.59 -169.99 -5.03 12.28 16 4 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 5 H -0.28 -5.12 7.11 56.52 0.40 -4.71 16 6 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 7 C -0.45 -11.33 9.12 -37.65 -0.34 -11.67 16 8 H 0.08 1.97 7.90 -52.49 -0.41 1.55 16 9 C 0.14 3.65 5.60 -106.55 -0.60 3.06 16 10 C -0.28 -6.77 9.90 -38.71 -0.38 -7.16 16 11 C 0.12 2.78 11.15 -17.68 -0.20 2.59 16 12 N -0.56 -13.62 7.85 -12.52 -0.10 -13.72 16 13 C 0.33 7.74 7.42 -154.71 -1.15 6.60 16 14 N -0.65 -11.94 5.08 -11.49 -0.06 -11.99 16 15 C 0.51 8.79 7.07 -10.98 -0.08 8.71 16 16 O -0.48 -10.08 13.52 5.56 0.08 -10.00 16 17 C -0.14 -1.72 3.06 -90.24 -0.28 -2.00 16 18 H 0.11 1.24 7.70 -51.93 -0.40 0.84 16 19 C -0.15 -1.45 6.68 -24.73 -0.17 -1.62 16 20 C 0.05 0.49 7.72 38.21 0.29 0.79 16 21 O -0.37 -4.62 10.54 -35.23 -0.37 -4.99 16 22 C 0.13 1.64 3.28 -27.31 -0.09 1.55 16 23 H 0.11 1.69 6.37 -51.93 -0.33 1.36 16 24 C -0.04 -0.49 4.80 -104.32 -0.50 -0.99 16 25 C -0.15 -1.61 9.46 -39.44 -0.37 -1.98 16 26 C 0.09 0.97 11.18 -17.55 -0.20 0.77 16 27 N -0.49 -5.96 10.36 -13.25 -0.14 -6.10 16 28 C 0.10 1.10 11.18 -17.55 -0.20 0.90 16 29 C -0.16 -1.87 9.80 -39.44 -0.39 -2.26 16 30 C -0.24 -5.92 8.62 -38.48 -0.33 -6.25 16 31 H 0.28 6.09 8.29 -40.82 -0.34 5.76 16 32 H 0.10 2.25 8.06 -52.49 -0.42 1.82 16 33 H 0.12 2.51 8.06 -52.49 -0.42 2.09 16 34 H 0.41 6.11 8.70 -40.82 -0.36 5.75 16 35 H 0.09 0.92 7.63 -51.93 -0.40 0.52 16 36 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.14 1.25 7.80 -52.49 -0.41 0.84 16 40 H 0.15 1.18 8.06 -52.49 -0.42 0.75 16 41 H 0.16 1.38 8.06 -52.49 -0.42 0.95 16 42 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 43 H 0.13 3.05 6.20 -52.49 -0.33 2.73 16 LS Contribution 365.74 15.07 5.51 5.51 Total: -1.00 -31.31 365.74 -9.71 -41.02 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -5.15 Total: 13.29 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -5.06 Total: -7.21 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: 0.31 Total: -49.90 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.30 Total: -15.00 kcal Atomic # 14 Polarization: 17.31 SS G_CDS: -5.03 Total: 12.28 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.31 -9.71 -41.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593093923.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.775 kcal (2) G-P(sol) polarization free energy of solvation -31.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds