Wall clock time and date at job start Sat Apr 11 2020 05:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86798 * 119.99732 * 2 1 4 4 H 1.48499 * 109.46907 * 240.00195 * 3 2 1 5 5 H 1.48503 * 109.47187 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47275 * 119.99711 * 3 2 1 7 7 C 1.40024 * 120.00269 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00138 * 162.84249 * 7 2 1 9 9 C 1.41547 * 120.00141 * 342.84547 * 7 2 1 10 10 C 1.41176 * 120.99908 * 156.60482 * 9 7 2 11 11 C 1.37583 * 119.01944 * 179.97438 * 10 9 7 12 12 N 1.32093 * 121.10697 * 359.97438 * 11 10 9 13 13 C 1.32467 * 122.22974 * 0.02562 * 12 11 10 14 14 N 1.39471 * 119.57835 * 180.02562 * 13 12 11 15 15 C 1.34778 * 119.99708 * 4.64984 * 14 13 12 16 16 O 1.21278 * 120.00369 * 355.17061 * 15 14 13 17 17 C 1.50708 * 119.99832 * 175.16359 * 15 14 13 18 18 H 1.09002 * 110.43160 * 61.09202 * 17 15 14 19 19 C 1.54805 * 110.48919 * 298.55133 * 17 15 14 20 20 C 1.54996 * 102.09257 * 262.20494 * 19 17 15 21 21 O 1.44386 * 103.48837 * 322.97447 * 20 19 17 22 22 C 1.43741 * 106.97338 * 40.06157 * 21 20 19 23 23 H 1.09004 * 109.87889 * 92.90790 * 22 21 20 24 24 C 1.50700 * 109.87809 * 214.06081 * 22 21 20 25 25 C 1.38644 * 120.78751 * 37.55308 * 24 22 21 26 26 C 1.38203 * 119.16186 * 179.79641 * 25 24 22 27 27 N 1.31876 * 120.76425 * 0.48609 * 26 25 24 28 28 C 1.31867 * 121.72463 * 359.74380 * 27 26 25 29 29 C 1.38207 * 120.76367 * 0.02562 * 28 27 26 30 30 C 1.38594 * 120.84243 * 359.74072 * 13 12 11 31 31 H 0.96996 * 120.00432 * 359.97438 * 1 2 3 32 32 H 1.08001 * 120.48978 * 0.02562 * 10 9 7 33 33 H 1.07999 * 119.44979 * 180.02562 * 11 10 9 34 34 H 0.96997 * 120.00439 * 184.66010 * 14 13 12 35 35 H 1.09001 * 110.90739 * 20.39754 * 19 17 15 36 36 H 1.08999 * 110.90925 * 143.96860 * 19 17 15 37 37 H 1.09002 * 110.62123 * 81.47373 * 20 19 17 38 38 H 1.09001 * 110.61767 * 204.47706 * 20 19 17 39 39 H 1.08001 * 120.42228 * 0.02562 * 25 24 22 40 40 H 1.08002 * 119.62082 * 180.25180 * 26 25 24 41 41 H 1.07999 * 119.62064 * 179.97438 * 28 27 26 42 42 H 1.08002 * 120.42063 * 179.97438 * 29 28 27 43 43 H 1.07997 * 120.60254 * 180.26986 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0951 1.6964 -1.2125 5 1 1.2763 2.7465 -0.0006 6 1 3.0951 1.6965 1.2125 7 6 2.0077 -1.2126 0.0005 8 1 3.0516 -1.2335 -0.2754 9 6 1.3472 -2.4111 0.3626 10 6 1.8258 -3.6654 -0.0740 11 6 1.1524 -4.8046 0.3026 12 7 0.0733 -4.7400 1.0616 13 6 -0.4161 -3.5887 1.4974 14 7 -1.5590 -3.5849 2.2967 15 6 -2.1041 -4.7502 2.6986 16 8 -1.6541 -5.8014 2.2946 17 6 -3.2728 -4.7468 3.6501 18 1 -4.1226 -4.2275 3.2072 19 6 -2.8757 -4.0883 4.9937 20 6 -2.5549 -5.3208 5.8771 21 8 -3.5358 -6.2962 5.4634 22 6 -3.6588 -6.1881 4.0354 23 1 -2.9847 -6.8944 3.5508 24 6 -5.0808 -6.4659 3.6210 25 6 -6.1441 -6.0296 4.3965 26 6 -7.4348 -6.2993 3.9825 27 7 -7.6600 -6.9708 2.8701 28 6 -6.6734 -7.4050 2.1105 29 6 -5.3569 -7.1689 2.4582 30 6 0.1966 -2.3883 1.1741 31 1 -0.4850 0.8400 0.0004 32 1 2.7078 -3.7299 -0.6939 33 1 1.5126 -5.7678 -0.0271 34 1 -1.9617 -2.7437 2.5632 35 1 -1.9954 -3.4571 4.8723 36 1 -3.7070 -3.5179 5.4080 37 1 -1.5461 -5.6831 5.6788 38 1 -2.6762 -5.0784 6.9328 39 1 -5.9661 -5.4828 5.3107 40 1 -8.2687 -5.9594 4.5789 41 1 -6.8968 -7.9521 1.2065 42 1 -4.5531 -7.5273 1.8322 43 1 -0.2031 -1.4523 1.5351 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593093923.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:41 Heat of formation + Delta-G solvation = -22.913910 kcal Electronic energy + Delta-G solvation = -28465.729273 eV Core-core repulsion = 24475.134785 eV Total energy + Delta-G solvation = -3990.594488 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.08206 -41.03120 -40.17673 -39.05547 -36.18536 -35.58742 -34.33848 -33.42363 -32.45520 -32.14731 -30.42738 -29.67139 -27.93739 -25.75874 -24.52141 -23.93781 -23.72415 -23.11515 -22.27299 -21.04688 -19.50835 -18.94905 -18.32011 -17.60199 -17.28929 -17.11983 -16.69128 -16.57529 -16.40045 -16.09657 -15.89085 -15.70099 -15.57494 -15.09983 -14.84292 -14.61753 -14.49803 -14.36283 -14.27291 -13.96923 -13.22998 -13.14137 -12.94336 -12.92663 -12.66606 -12.61481 -12.35847 -12.17942 -12.05241 -11.96216 -11.53184 -11.16480 -11.14793 -10.94545 -10.50977 -10.47235 -10.10271 -9.97868 -9.62448 -8.91810 -8.66782 -6.58156 0.15250 0.18822 0.69597 0.98362 1.40928 1.50759 1.54677 1.77252 1.97690 2.19037 2.61271 2.77716 2.94150 3.27883 3.36327 3.50438 3.58157 3.72638 3.85897 3.90052 3.94325 4.17260 4.19775 4.22201 4.27269 4.34195 4.63851 4.70750 4.72067 4.76129 4.78990 4.83009 4.89682 4.90059 4.95533 4.99769 5.05725 5.20135 5.34034 5.45657 5.59963 5.70769 5.73897 5.87982 6.10261 6.42254 6.55103 6.76852 6.80834 6.98679 7.19980 7.79781 8.23578 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016340 B = 0.002609 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.149981 B =10731.498171 C =10866.778456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.042 3.958 3 Si 0.986 3.014 4 H -0.261 1.261 5 H -0.265 1.265 6 H -0.259 1.259 7 C -0.484 4.484 8 H 0.083 0.917 9 C 0.114 3.886 10 C -0.299 4.299 11 C 0.114 3.886 12 N -0.579 5.579 13 C 0.333 3.667 14 N -0.647 5.647 15 C 0.506 3.494 16 O -0.518 6.518 17 C -0.125 4.125 18 H 0.130 0.870 19 C -0.138 4.138 20 C 0.041 3.959 21 O -0.372 6.372 22 C 0.131 3.869 23 H 0.077 0.923 24 C -0.053 4.053 25 C -0.145 4.145 26 C 0.091 3.909 27 N -0.507 5.507 28 C 0.092 3.908 29 C -0.171 4.171 30 C -0.259 4.259 31 H 0.294 0.706 32 H 0.114 0.886 33 H 0.148 0.852 34 H 0.423 0.577 35 H 0.089 0.911 36 H 0.126 0.874 37 H 0.046 0.954 38 H 0.132 0.868 39 H 0.158 0.842 40 H 0.186 0.814 41 H 0.175 0.825 42 H 0.133 0.867 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.296 -2.195 11.207 16.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.176 4.176 3 Si 0.806 3.194 4 H -0.186 1.186 5 H -0.189 1.189 6 H -0.184 1.184 7 C -0.515 4.515 8 H 0.101 0.899 9 C 0.106 3.894 10 C -0.323 4.323 11 C -0.040 4.040 12 N -0.299 5.299 13 C 0.108 3.892 14 N -0.294 5.294 15 C 0.292 3.708 16 O -0.391 6.391 17 C -0.147 4.147 18 H 0.148 0.852 19 C -0.175 4.175 20 C -0.035 4.035 21 O -0.291 6.291 22 C 0.073 3.927 23 H 0.095 0.905 24 C -0.061 4.061 25 C -0.164 4.164 26 C -0.065 4.065 27 N -0.216 5.216 28 C -0.064 4.064 29 C -0.191 4.191 30 C -0.285 4.285 31 H 0.105 0.895 32 H 0.132 0.868 33 H 0.166 0.834 34 H 0.261 0.739 35 H 0.108 0.892 36 H 0.144 0.856 37 H 0.065 0.935 38 H 0.150 0.850 39 H 0.176 0.824 40 H 0.203 0.797 41 H 0.192 0.808 42 H 0.151 0.849 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.655 -3.948 11.081 17.278 hybrid contribution 1.960 1.889 -0.601 2.787 sum -10.695 -2.059 10.480 15.115 Atomic orbital electron populations 1.69793 1.08999 1.31191 1.33364 1.26794 0.95554 1.04497 0.90731 0.85190 0.78817 0.75277 0.80107 1.18569 1.18878 1.18369 1.19847 0.98392 0.91760 1.41461 0.89855 1.17992 0.90708 0.93232 0.87478 1.22079 1.06043 0.93754 1.10453 1.22188 0.90631 0.97863 0.93304 1.67337 1.16432 1.27098 1.19076 1.18406 0.88161 0.90317 0.92328 1.43383 1.26245 1.10214 1.49522 1.21023 0.84606 0.83401 0.81728 1.90751 1.61623 1.31583 1.55109 1.22661 0.96726 0.98124 0.97173 0.85179 1.23275 1.04616 0.98494 0.91151 1.23786 0.91663 0.86612 1.01392 1.88883 1.61285 1.59534 1.19367 1.21373 0.92970 0.95415 0.82974 0.90491 1.20234 0.94774 0.96210 0.94885 1.22184 0.92481 1.00666 1.01105 1.23291 0.96939 0.93667 0.92620 1.67723 1.37083 1.10572 1.06254 1.23029 0.87775 0.96553 0.99042 1.22168 0.99190 0.99983 0.97803 1.21513 1.02996 0.95833 1.08155 0.89541 0.86757 0.83445 0.73895 0.89235 0.85604 0.93537 0.85048 0.82413 0.79748 0.80773 0.84947 0.85675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.22 10.93 21.84 0.24 -37.98 16 2 C 0.04 1.95 5.19 85.29 0.44 2.39 16 3 Si 0.99 34.67 29.59 68.60 2.03 36.70 16 4 H -0.26 -9.05 7.11 99.48 0.71 -8.35 16 5 H -0.26 -8.70 7.11 99.48 0.71 -7.99 16 6 H -0.26 -8.96 7.11 99.48 0.71 -8.26 16 7 C -0.48 -24.48 9.12 23.52 0.21 -24.26 16 8 H 0.08 4.04 7.90 -2.91 -0.02 4.02 16 9 C 0.11 5.96 5.60 -21.11 -0.12 5.84 16 10 C -0.30 -14.66 9.90 22.84 0.23 -14.44 16 11 C 0.11 5.41 11.15 84.50 0.94 6.35 16 12 N -0.58 -29.13 7.85 -193.53 -1.52 -30.65 16 13 C 0.33 15.75 7.42 132.75 0.98 16.73 16 14 N -0.65 -23.70 5.08 -308.65 -1.57 -25.27 16 15 C 0.51 17.65 7.07 87.66 0.62 18.27 16 16 O -0.52 -22.76 13.52 -3.02 -0.04 -22.80 16 17 C -0.13 -2.96 3.06 -10.55 -0.03 -3.00 16 18 H 0.13 2.63 7.70 -2.39 -0.02 2.61 16 19 C -0.14 -2.36 6.68 31.89 0.21 -2.14 16 20 C 0.04 0.79 7.72 72.66 0.56 1.35 16 21 O -0.37 -8.86 10.54 -148.98 -1.57 -10.43 16 22 C 0.13 3.37 3.28 30.22 0.10 3.47 16 23 H 0.08 2.51 6.37 -2.38 -0.02 2.49 16 24 C -0.05 -1.24 4.80 -19.67 -0.09 -1.34 16 25 C -0.14 -2.74 9.46 22.36 0.21 -2.53 16 26 C 0.09 1.69 11.18 84.68 0.95 2.64 16 27 N -0.51 -11.60 10.36 -195.84 -2.03 -13.63 16 28 C 0.09 2.04 11.18 84.68 0.95 2.98 16 29 C -0.17 -4.14 9.80 22.36 0.22 -3.92 16 30 C -0.26 -12.91 8.62 22.99 0.20 -12.71 16 31 H 0.29 12.37 8.29 -92.71 -0.77 11.60 16 32 H 0.11 5.13 8.06 -2.91 -0.02 5.10 16 33 H 0.15 6.07 8.06 -2.91 -0.02 6.04 16 34 H 0.42 12.40 8.70 -92.71 -0.81 11.59 16 35 H 0.09 1.61 7.63 -2.39 -0.02 1.59 16 36 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.13 1.64 8.14 -2.39 -0.02 1.63 16 39 H 0.16 2.28 7.80 -2.91 -0.02 2.26 16 40 H 0.19 2.15 8.06 -2.91 -0.02 2.13 16 41 H 0.18 2.98 8.06 -2.91 -0.02 2.95 16 42 H 0.13 3.29 8.06 -2.91 -0.02 3.26 16 43 H 0.13 6.13 6.20 -2.91 -0.02 6.11 16 Total: -1.00 -69.59 365.74 2.38 -67.22 By element: Atomic # 1 Polarization: 40.89 SS G_CDS: 0.25 Total: 41.14 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: 6.58 Total: -4.31 kcal Atomic # 7 Polarization: -102.65 SS G_CDS: -4.88 Total: -107.53 kcal Atomic # 8 Polarization: -31.61 SS G_CDS: -1.61 Total: -33.22 kcal Atomic # 14 Polarization: 34.67 SS G_CDS: 2.03 Total: 36.70 kcal Total: -69.59 2.38 -67.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593093923.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.302 kcal (2) G-P(sol) polarization free energy of solvation -69.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds