Wall clock time and date at job start Sat Apr 11 2020 05:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46616 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47104 * 299.99522 * 3 2 1 6 6 H 1.48489 * 109.47200 * 59.99802 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 S 1.81401 * 109.47149 * 179.97438 * 10 9 7 12 12 O 1.42093 * 110.54547 * 291.62539 * 11 10 9 13 13 O 1.42105 * 110.53941 * 68.37879 * 11 10 9 14 14 N 1.65595 * 104.44822 * 179.97438 * 11 10 9 15 15 C 1.50241 * 120.55156 * 90.00307 * 14 11 10 16 16 C 1.46645 * 106.98450 * 111.48416 * 15 14 11 17 17 C 1.52468 * 114.11678 * 58.14115 * 16 15 14 18 18 N 1.43917 * 105.41247 * 269.64618 * 17 16 15 19 19 C 1.39174 * 110.99603 * 223.42262 * 18 17 16 20 20 C 1.39474 * 120.86216 * 123.67535 * 19 18 17 21 21 C 1.37900 * 119.06514 * 179.73040 * 20 19 18 22 22 N 1.31988 * 120.84293 * 0.55327 * 21 20 19 23 23 C 1.31997 * 121.91127 * 359.72323 * 22 21 20 24 24 C 1.37900 * 120.84034 * 359.97438 * 23 22 21 25 25 C 1.48822 * 112.04928 * 98.70414 * 18 17 16 26 26 C 1.43666 * 120.55415 * 269.72656 * 14 11 10 27 27 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 29 29 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 30 30 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 31 31 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 32 32 H 1.09000 * 109.95034 * 230.85405 * 15 14 11 33 33 H 1.09000 * 109.94650 * 352.02605 * 15 14 11 34 34 H 1.09000 * 108.55240 * 179.34137 * 16 15 14 35 35 H 1.09009 * 108.55103 * 297.08808 * 16 15 14 36 36 H 1.09008 * 110.24701 * 28.61299 * 17 16 15 37 37 H 1.08995 * 110.25356 * 150.52822 * 17 16 15 38 38 H 1.08004 * 120.46942 * 359.97438 * 20 19 18 39 39 H 1.08005 * 119.57389 * 180.25208 * 21 20 19 40 40 H 1.07994 * 119.58246 * 179.97438 * 23 22 21 41 41 H 1.07998 * 120.46578 * 180.02562 * 24 23 22 42 42 H 1.09005 * 109.23504 * 81.30501 * 25 18 17 43 43 H 1.09001 * 109.23370 * 200.68204 * 25 18 17 44 44 H 1.08999 * 108.14324 * 30.87867 * 26 14 11 45 45 H 1.09002 * 108.14020 * 147.40441 * 26 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 16 1.3380 -5.2331 0.0013 12 8 0.6645 -5.4193 1.2385 13 8 0.6637 -5.4200 -1.2355 14 7 2.5201 -6.3927 0.0005 15 6 3.0662 -6.9275 1.2940 16 6 2.6235 -8.3214 1.4021 17 6 3.0675 -9.2077 0.2437 18 7 2.0120 -9.1207 -0.7308 19 6 1.7149 -10.3743 -1.2573 20 6 0.4199 -10.8882 -1.1944 21 6 0.1658 -12.1320 -1.7329 22 7 1.1311 -12.8373 -2.2921 23 6 2.3702 -12.3884 -2.3662 24 6 2.7056 -11.1516 -1.8569 25 6 2.3291 -8.1493 -1.8127 26 6 3.0364 -6.9085 -1.2370 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6240 -2.5566 0.8902 30 1 2.8718 -3.6044 0.8905 31 1 2.8718 -3.6044 -0.8895 32 1 4.1552 -6.8828 1.2847 33 1 2.6774 -6.3464 2.1302 34 1 3.0166 -8.7392 2.3290 35 1 1.5346 -8.3367 1.4504 36 1 4.0019 -8.8372 -0.1782 37 1 3.1886 -10.2370 0.5810 38 1 -0.3737 -10.3184 -0.7338 39 1 -0.8350 -12.5361 -1.6923 40 1 3.1309 -12.9974 -2.8317 41 1 3.7213 -10.7901 -1.9212 42 1 2.9791 -8.6275 -2.5455 43 1 1.4045 -7.8410 -2.3008 44 1 2.9824 -6.1163 -1.9837 45 1 4.0875 -7.1567 -1.0890 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601518911.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:26 Heat of formation + Delta-G solvation = -14.689764 kcal Electronic energy + Delta-G solvation = -27807.675845 eV Core-core repulsion = 23952.881934 eV Total energy + Delta-G solvation = -3854.793911 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.91470 -39.02953 -36.65035 -35.85725 -35.35138 -33.90186 -32.91528 -31.57673 -31.27978 -31.15982 -27.59540 -26.37393 -25.58365 -23.78494 -23.05696 -22.03854 -21.41689 -20.64328 -18.49589 -17.92136 -17.37101 -16.62634 -16.56625 -16.44555 -15.92668 -15.56524 -15.36070 -14.98711 -14.70211 -14.55954 -14.13919 -13.92666 -13.78860 -13.64928 -13.54611 -13.29524 -12.82864 -12.54185 -12.24591 -12.10282 -11.77004 -11.61212 -11.54878 -11.49676 -11.29634 -11.11054 -10.97493 -10.96638 -10.77526 -10.40750 -10.38983 -9.83506 -9.78100 -9.74088 -9.44215 -9.34789 -8.83300 -8.72166 -8.52538 -6.14296 -4.19940 0.75120 0.84567 0.93998 2.97678 3.23614 3.30908 3.34120 3.43451 3.54988 4.19180 4.30239 4.37540 4.46083 4.51779 4.62270 4.63481 4.72666 4.77833 4.88582 4.92869 5.07939 5.16393 5.20872 5.22874 5.27120 5.34450 5.47856 5.52383 5.54426 5.55546 5.69046 5.74150 5.74532 5.81717 5.97289 6.12204 6.23111 6.33518 6.47311 6.64784 6.75945 7.07560 7.28440 7.34302 7.70847 7.78841 8.15780 8.83774 9.44948 10.96768 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.028210 B = 0.002495 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.308870 B =11219.472376 C =11397.975797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.520 4.520 8 H 0.061 0.939 9 C 0.028 3.972 10 C -0.592 4.592 11 S 2.592 3.408 12 O -0.962 6.962 13 O -0.961 6.961 14 N -0.996 5.996 15 C 0.128 3.872 16 C -0.136 4.136 17 C 0.063 3.937 18 N -0.503 5.503 19 C 0.142 3.858 20 C -0.150 4.150 21 C 0.104 3.896 22 N -0.494 5.494 23 C 0.105 3.895 24 C -0.208 4.208 25 C 0.039 3.961 26 C 0.130 3.870 27 H 0.265 0.735 28 H 0.033 0.967 29 H 0.033 0.967 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.057 0.943 37 H 0.071 0.929 38 H 0.142 0.858 39 H 0.158 0.842 40 H 0.153 0.847 41 H 0.130 0.870 42 H 0.054 0.946 43 H 0.092 0.908 44 H 0.083 0.917 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.079 -22.505 -1.269 24.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.559 4.559 8 H 0.080 0.920 9 C -0.011 4.011 10 C -0.725 4.725 11 S 2.690 3.310 12 O -0.952 6.952 13 O -0.952 6.952 14 N -0.831 5.831 15 C 0.005 3.995 16 C -0.176 4.176 17 C -0.064 4.064 18 N -0.224 5.224 19 C 0.039 3.961 20 C -0.171 4.171 21 C -0.053 4.053 22 N -0.203 5.203 23 C -0.052 4.052 24 C -0.230 4.230 25 C -0.088 4.088 26 C 0.002 3.998 27 H 0.074 0.926 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.136 0.864 31 H 0.136 0.864 32 H 0.089 0.911 33 H 0.115 0.885 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.160 0.840 39 H 0.175 0.825 40 H 0.170 0.830 41 H 0.148 0.852 42 H 0.073 0.927 43 H 0.111 0.889 44 H 0.101 0.899 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.412 -23.213 -1.357 24.406 hybrid contribution 1.943 1.817 -0.099 2.662 sum 9.355 -21.396 -1.456 23.397 Atomic orbital electron populations 1.69968 1.06113 1.27104 1.49633 1.25080 0.94980 0.99568 0.94923 0.86415 0.79906 0.83185 0.77794 1.19664 1.20778 1.20773 1.21037 0.93067 0.89764 1.52033 0.92028 1.18959 0.92711 0.90616 0.98832 1.30520 1.13716 1.18351 1.09884 1.05739 0.74825 0.76221 0.74208 1.93526 1.71140 1.85174 1.45397 1.93531 1.71133 1.85131 1.45369 1.57983 1.59895 1.54804 1.10464 1.20897 0.98616 0.94959 0.85051 1.20838 1.04172 0.95139 0.97414 1.21690 0.92309 0.99845 0.92591 1.59358 1.42927 1.05095 1.15038 1.19308 0.93395 0.90421 0.92934 1.22208 0.97049 0.96940 1.00889 1.22748 0.98513 0.90945 0.93045 1.67710 1.01010 1.35862 1.15722 1.22586 0.93516 0.93321 0.95777 1.22726 1.00906 0.97487 1.01872 1.23404 1.01954 0.91881 0.91567 1.20556 0.97205 0.95769 0.86279 0.92562 0.94905 0.94887 0.86351 0.86434 0.91057 0.88508 0.91212 0.89610 0.92469 0.91079 0.83996 0.82479 0.83018 0.85209 0.92747 0.88943 0.89907 0.91240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.27 9.11 -34.44 -0.31 -14.58 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 9 C 0.03 0.71 4.98 -27.89 -0.14 0.57 16 10 C -0.59 -11.11 6.12 37.16 0.23 -10.88 16 11 S 2.59 45.74 5.36 -107.50 -0.58 45.16 16 12 O -0.96 -19.59 16.80 -57.54 -0.97 -20.56 16 13 O -0.96 -19.42 17.08 -57.54 -0.98 -20.41 16 14 N -1.00 -12.61 2.97 -116.23 -0.35 -12.96 16 15 C 0.13 1.31 5.98 -4.98 -0.03 1.28 16 16 C -0.14 -1.32 5.33 -30.04 -0.16 -1.48 16 17 C 0.06 0.55 4.89 -5.69 -0.03 0.52 16 18 N -0.50 -5.38 3.99 -171.37 -0.68 -6.07 16 19 C 0.14 1.45 4.48 -83.61 -0.37 1.08 16 20 C -0.15 -1.52 10.06 -39.24 -0.39 -1.92 16 21 C 0.10 0.99 11.17 -17.61 -0.20 0.80 16 22 N -0.49 -5.20 10.36 -13.35 -0.14 -5.34 16 23 C 0.11 0.93 11.17 -17.60 -0.20 0.73 16 24 C -0.21 -1.78 8.45 -39.25 -0.33 -2.11 16 25 C 0.04 0.42 5.97 -2.24 -0.01 0.41 16 26 C 0.13 1.37 4.65 -5.03 -0.02 1.35 16 27 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.12 1.99 8.14 -51.92 -0.42 1.57 16 31 H 0.12 1.97 8.14 -51.92 -0.42 1.55 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.10 1.06 7.23 -51.93 -0.38 0.68 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.09 1.07 7.86 -51.92 -0.41 0.66 16 36 H 0.06 0.42 6.13 -51.92 -0.32 0.11 16 37 H 0.07 0.58 7.39 -51.93 -0.38 0.19 16 38 H 0.14 1.40 8.06 -52.48 -0.42 0.98 16 39 H 0.16 1.10 8.06 -52.48 -0.42 0.67 16 40 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.13 0.88 7.92 -52.49 -0.42 0.46 16 42 H 0.05 0.47 7.41 -51.93 -0.38 0.09 16 43 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.08 0.87 7.71 -51.93 -0.40 0.47 16 45 H 0.07 0.54 6.89 -51.93 -0.36 0.18 16 LS Contribution 374.27 15.07 5.64 5.64 Total: -1.00 -35.46 374.27 -11.22 -46.68 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -6.81 Total: 0.22 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: -2.07 Total: -22.74 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: -0.43 Total: -50.03 kcal Atomic # 8 Polarization: -39.02 SS G_CDS: -1.95 Total: -40.97 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 45.74 SS G_CDS: -0.58 Total: 45.16 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.46 -11.22 -46.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601518911.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.988 kcal (2) G-P(sol) polarization free energy of solvation -35.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds