Wall clock time and date at job start Sat Apr 11 2020 05:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30831 * 125.89417 * 2 1 4 4 N 1.40090 * 108.20466 * 180.02562 * 3 2 1 5 5 C 1.46499 * 126.03978 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47273 * 90.02656 * 5 4 3 7 7 H 1.08005 * 119.99613 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00381 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00432 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99649 * 0.02562 * 8 6 5 11 11 H 1.48499 * 109.47216 * 90.00144 * 10 8 6 12 12 H 1.48499 * 109.47220 * 209.99664 * 10 8 6 13 13 H 1.48496 * 109.47511 * 329.99988 * 10 8 6 14 14 C 1.34942 * 107.92106 * 359.76372 * 4 3 2 15 15 C 1.50707 * 126.12595 * 180.23882 * 14 4 3 16 16 C 1.35312 * 107.74978 * 0.38428 * 14 4 3 17 17 C 1.50698 * 126.04143 * 179.87168 * 16 14 4 18 18 N 1.46503 * 109.47684 * 269.71735 * 17 16 14 19 19 C 1.34520 * 124.45793 * 270.00504 * 18 17 16 20 20 O 1.21449 * 125.71588 * 359.97438 * 19 18 17 21 21 C 1.47822 * 108.57877 * 179.97438 * 19 18 17 22 22 C 1.38564 * 134.29562 * 180.02562 * 21 19 18 23 23 C 1.38613 * 119.71575 * 180.24850 * 22 21 19 24 24 C 1.38221 * 120.45721 * 359.47768 * 23 22 21 25 25 C 1.38614 * 120.46541 * 0.50421 * 24 23 22 26 26 C 1.38568 * 119.71697 * 359.75848 * 25 24 23 27 27 C 1.34520 * 124.45856 * 89.99571 * 18 17 16 28 28 O 1.21446 * 125.71234 * 359.97322 * 27 18 17 29 29 H 1.09005 * 109.47143 * 269.96768 * 1 2 3 30 30 H 1.08998 * 109.47584 * 29.96669 * 1 2 3 31 31 H 1.08999 * 109.47161 * 149.97430 * 1 2 3 32 32 H 1.08997 * 109.47470 * 210.03200 * 5 4 3 33 33 H 1.09002 * 109.47009 * 330.02924 * 5 4 3 34 34 H 0.96997 * 120.00491 * 180.02562 * 9 8 6 35 35 H 1.09000 * 109.46904 * 270.17686 * 15 14 4 36 36 H 1.08998 * 109.46904 * 30.17285 * 15 14 4 37 37 H 1.09003 * 109.47032 * 150.17446 * 15 14 4 38 38 H 1.09003 * 109.46883 * 149.71593 * 17 16 14 39 39 H 1.09002 * 109.47169 * 29.72282 * 17 16 14 40 40 H 1.08002 * 120.13758 * 359.96600 * 22 21 19 41 41 H 1.07998 * 119.76643 * 179.69270 * 23 22 21 42 42 H 1.08001 * 119.76837 * 180.26667 * 24 23 22 43 43 H 1.07995 * 120.14124 * 179.74284 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 -0.0006 5 6 4.7899 1.5009 -0.0003 6 6 5.1956 1.7966 1.4206 7 1 4.6304 1.3801 2.2414 8 6 6.2883 2.5987 1.6729 9 7 6.6427 2.8563 2.9129 10 14 7.2654 3.3195 0.2533 11 1 6.6955 4.6388 -0.1204 12 1 8.6821 3.4907 0.6640 13 1 7.1953 2.4020 -0.9122 14 6 3.6142 -0.7152 0.0043 15 6 4.8351 -1.5988 0.0107 16 6 2.3272 -1.1330 -0.0007 17 6 1.8600 -2.5657 -0.0006 18 7 1.7082 -3.0301 -1.3817 19 6 0.5748 -2.9274 -2.0990 20 8 -0.4688 -2.4430 -1.7102 21 6 0.8122 -3.5030 -3.4397 22 6 0.0326 -3.6697 -4.5731 23 6 0.5754 -4.2705 -5.6981 24 6 1.8911 -4.6943 -5.7003 25 6 2.6830 -4.5337 -4.5740 26 6 2.1523 -3.9396 -3.4402 27 6 2.6839 -3.6151 -2.0996 28 8 3.8129 -3.8382 -1.7118 29 1 -0.3634 -0.0006 1.0277 30 1 -0.3634 0.8902 -0.5133 31 1 -0.3633 -0.8897 -0.5142 32 1 5.6090 0.9989 -0.5151 33 1 4.5560 2.4339 -0.5130 34 1 7.4111 3.4209 3.0904 35 1 5.1339 -1.8130 -1.0155 36 1 5.6489 -1.0902 0.5274 37 1 4.6054 -2.5322 0.5246 38 1 0.9014 -2.6352 0.5136 39 1 2.5936 -3.1870 0.5131 40 1 -0.9949 -3.3370 -4.5782 41 1 -0.0329 -4.4054 -6.5802 42 1 2.3039 -5.1572 -6.5844 43 1 3.7091 -4.8705 -4.5800 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601931624.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:49 Heat of formation + Delta-G solvation = 57.090403 kcal Electronic energy + Delta-G solvation = -29137.390099 eV Core-core repulsion = 25150.264858 eV Total energy + Delta-G solvation = -3987.125240 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -42.41228 -40.65969 -38.69153 -38.64510 -35.89873 -34.22876 -33.01959 -32.50658 -31.48156 -31.04698 -29.38687 -28.17031 -26.11450 -25.50749 -25.24729 -23.26690 -22.35273 -22.02515 -20.15942 -19.13533 -18.76682 -17.90319 -17.34612 -17.14668 -16.73457 -16.36178 -15.59533 -15.43614 -14.98440 -14.66257 -14.49150 -14.34362 -14.08702 -14.04951 -13.65944 -13.45020 -13.05113 -12.88218 -12.77404 -12.64130 -12.48492 -12.24261 -12.03615 -11.94286 -11.79236 -11.67009 -11.26282 -11.04543 -10.78227 -10.61223 -10.29328 -10.25737 -9.98413 -9.71449 -9.69358 -9.57420 -9.45893 -8.80895 -8.29189 -7.75891 -6.28970 -4.32570 -0.17042 0.62562 1.81218 2.14755 2.69979 2.90256 3.13745 3.19534 3.20951 3.28260 3.35296 3.42750 3.43875 4.14937 4.19263 4.27742 4.49306 4.69619 4.86308 4.91675 4.99072 5.08619 5.22197 5.28412 5.37957 5.41191 5.59468 5.63040 5.67715 5.74185 5.79253 5.80908 5.92994 6.04982 6.07550 6.19577 6.22610 6.32846 6.36595 6.46152 6.57066 6.77308 6.86692 7.17314 7.25121 7.33678 7.64890 7.77431 8.27291 8.51403 8.75547 9.26000 10.83451 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015783 B = 0.003231 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.675475 B = 8662.635047 C = 9412.116287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.075 3.925 3 N -0.294 5.294 4 N -0.323 5.323 5 C 0.229 3.771 6 C -0.542 4.542 7 H 0.081 0.919 8 C 0.080 3.920 9 N -0.885 5.885 10 Si 0.873 3.127 11 H -0.270 1.270 12 H -0.279 1.279 13 H -0.265 1.265 14 C 0.125 3.875 15 C -0.091 4.091 16 C -0.305 4.305 17 C 0.201 3.799 18 N -0.566 5.566 19 C 0.574 3.426 20 O -0.459 6.459 21 C -0.138 4.138 22 C -0.048 4.048 23 C -0.100 4.100 24 C -0.100 4.100 25 C -0.048 4.048 26 C -0.137 4.137 27 C 0.571 3.429 28 O -0.456 6.456 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.093 0.907 32 H 0.048 0.952 33 H 0.046 0.954 34 H 0.269 0.731 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.057 -18.290 -17.482 27.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 N -0.117 5.117 4 N -0.101 5.101 5 C 0.110 3.890 6 C -0.580 4.580 7 H 0.099 0.901 8 C -0.124 4.124 9 N -0.522 5.522 10 Si 0.699 3.301 11 H -0.196 1.196 12 H -0.204 1.204 13 H -0.189 1.189 14 C -0.008 4.008 15 C -0.150 4.150 16 C -0.318 4.318 17 C 0.082 3.918 18 N -0.307 5.307 19 C 0.363 3.637 20 O -0.331 6.331 21 C -0.141 4.141 22 C -0.067 4.067 23 C -0.118 4.118 24 C -0.118 4.118 25 C -0.067 4.067 26 C -0.141 4.141 27 C 0.360 3.640 28 O -0.327 6.327 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.112 0.888 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.159 0.841 41 H 0.157 0.843 42 H 0.157 0.843 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -10.666 -16.590 -16.816 25.919 hybrid contribution 0.732 -0.111 -0.493 0.889 sum -9.935 -16.700 -17.310 26.023 Atomic orbital electron populations 1.20404 0.87322 1.03987 1.02555 1.22070 0.96473 0.90271 1.00255 1.77338 0.87028 1.22484 1.24834 1.48906 1.05676 1.03999 1.51515 1.20020 0.79336 0.89801 0.99862 1.21141 1.14034 1.32619 0.90208 0.90079 1.24797 0.96560 0.95261 0.95808 1.69864 1.26824 1.36864 1.18627 0.86896 0.80036 0.80488 0.82656 1.19575 1.20431 1.18935 1.20900 0.96266 0.85514 0.98143 1.20476 0.93936 0.97609 1.02934 1.19426 0.91936 0.94688 1.25792 1.19792 1.03005 0.91395 0.77651 1.46915 1.12719 1.54822 1.16234 1.18338 0.83094 0.77378 0.84927 1.90682 1.26871 1.40377 1.75137 1.20695 0.95524 1.02416 0.95482 1.20805 1.00068 0.95459 0.90352 1.21442 0.95588 0.96758 0.98039 1.21446 0.93896 0.98408 0.98015 1.20813 1.00553 0.95007 0.90341 1.20715 0.95297 1.02534 0.95531 1.18350 0.84381 0.76360 0.84947 1.90795 1.17263 1.49441 1.75199 0.91278 0.91760 0.88840 0.93408 0.93593 0.92057 0.90735 0.89917 0.90218 0.88314 0.88450 0.84107 0.84252 0.84251 0.84107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.35 10.12 36.01 0.36 -0.99 16 2 C 0.08 1.50 7.22 -82.41 -0.59 0.91 16 3 N -0.29 -6.91 12.58 33.67 0.42 -6.49 16 4 N -0.32 -7.61 3.60 -58.32 -0.21 -7.82 16 5 C 0.23 5.65 4.88 -5.20 -0.03 5.62 16 6 C -0.54 -15.37 9.94 -34.44 -0.34 -15.71 16 7 H 0.08 2.59 8.06 -52.48 -0.42 2.17 16 8 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 9 N -0.89 -26.49 13.96 55.43 0.77 -25.71 16 10 Si 0.87 20.48 27.47 -169.99 -4.67 15.81 16 11 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 H -0.26 -5.85 6.54 56.52 0.37 -5.48 16 14 C 0.13 2.56 6.93 -82.26 -0.57 1.99 16 15 C -0.09 -1.61 8.82 36.01 0.32 -1.29 16 16 C -0.31 -5.64 5.68 -105.06 -0.60 -6.24 16 17 C 0.20 2.89 5.68 -5.19 -0.03 2.86 16 18 N -0.57 -7.71 2.61 -118.90 -0.31 -8.02 16 19 C 0.57 7.50 8.02 -12.46 -0.10 7.40 16 20 O -0.46 -6.62 14.65 5.41 0.08 -6.54 16 21 C -0.14 -1.46 6.40 -104.83 -0.67 -2.13 16 22 C -0.05 -0.37 10.09 -39.32 -0.40 -0.76 16 23 C -0.10 -0.54 10.04 -39.45 -0.40 -0.93 16 24 C -0.10 -0.54 10.03 -39.45 -0.40 -0.94 16 25 C -0.05 -0.38 10.09 -39.32 -0.40 -0.77 16 26 C -0.14 -1.47 6.41 -104.83 -0.67 -2.14 16 27 C 0.57 7.62 8.02 -12.46 -0.10 7.52 16 28 O -0.46 -6.84 16.12 5.41 0.09 -6.75 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.09 1.43 4.60 -51.93 -0.24 1.19 16 32 H 0.05 1.11 6.74 -51.93 -0.35 0.76 16 33 H 0.05 1.14 7.57 -51.93 -0.39 0.74 16 34 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.07 1.25 7.50 -51.93 -0.39 0.86 16 36 H 0.08 1.56 7.74 -51.93 -0.40 1.15 16 37 H 0.08 1.24 7.12 -51.93 -0.37 0.87 16 38 H 0.10 1.28 7.74 -51.93 -0.40 0.87 16 39 H 0.10 1.29 6.96 -51.93 -0.36 0.93 16 40 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.14 0.34 8.06 -52.49 -0.42 -0.08 16 42 H 0.14 0.36 8.06 -52.49 -0.42 -0.07 16 43 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 366.42 15.07 5.52 5.52 Total: -1.00 -34.24 366.42 -8.04 -42.28 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -5.03 Total: 1.19 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -4.70 Total: -3.46 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: 0.68 Total: -48.04 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.17 Total: -13.29 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.67 Total: 15.81 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.24 -8.04 -42.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601931624.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.366 kcal (2) G-P(sol) polarization free energy of solvation -34.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds