Wall clock time and date at job start Sat Apr 11 2020 05:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30831 * 125.89417 * 2 1 4 4 N 1.40090 * 108.20466 * 180.02562 * 3 2 1 5 5 C 1.46499 * 126.03978 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47273 * 90.02656 * 5 4 3 7 7 H 1.08005 * 119.99613 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00381 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00432 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99649 * 0.02562 * 8 6 5 11 11 H 1.48499 * 109.47216 * 90.00144 * 10 8 6 12 12 H 1.48499 * 109.47220 * 209.99664 * 10 8 6 13 13 H 1.48496 * 109.47511 * 329.99988 * 10 8 6 14 14 C 1.34942 * 107.92106 * 359.76372 * 4 3 2 15 15 C 1.50707 * 126.12595 * 180.23882 * 14 4 3 16 16 C 1.35312 * 107.74978 * 0.38428 * 14 4 3 17 17 C 1.50698 * 126.04143 * 179.87168 * 16 14 4 18 18 N 1.46503 * 109.47684 * 269.71735 * 17 16 14 19 19 C 1.34520 * 124.45793 * 270.00504 * 18 17 16 20 20 O 1.21449 * 125.71588 * 359.97438 * 19 18 17 21 21 C 1.47822 * 108.57877 * 179.97438 * 19 18 17 22 22 C 1.38564 * 134.29562 * 180.02562 * 21 19 18 23 23 C 1.38613 * 119.71575 * 180.24850 * 22 21 19 24 24 C 1.38221 * 120.45721 * 359.47768 * 23 22 21 25 25 C 1.38614 * 120.46541 * 0.50421 * 24 23 22 26 26 C 1.38568 * 119.71697 * 359.75848 * 25 24 23 27 27 C 1.34520 * 124.45856 * 89.99571 * 18 17 16 28 28 O 1.21446 * 125.71234 * 359.97322 * 27 18 17 29 29 H 1.09005 * 109.47143 * 269.96768 * 1 2 3 30 30 H 1.08998 * 109.47584 * 29.96669 * 1 2 3 31 31 H 1.08999 * 109.47161 * 149.97430 * 1 2 3 32 32 H 1.08997 * 109.47470 * 210.03200 * 5 4 3 33 33 H 1.09002 * 109.47009 * 330.02924 * 5 4 3 34 34 H 0.96997 * 120.00491 * 180.02562 * 9 8 6 35 35 H 1.09000 * 109.46904 * 270.17686 * 15 14 4 36 36 H 1.08998 * 109.46904 * 30.17285 * 15 14 4 37 37 H 1.09003 * 109.47032 * 150.17446 * 15 14 4 38 38 H 1.09003 * 109.46883 * 149.71593 * 17 16 14 39 39 H 1.09002 * 109.47169 * 29.72282 * 17 16 14 40 40 H 1.08002 * 120.13758 * 359.96600 * 22 21 19 41 41 H 1.07998 * 119.76643 * 179.69270 * 23 22 21 42 42 H 1.08001 * 119.76837 * 180.26667 * 24 23 22 43 43 H 1.07995 * 120.14124 * 179.74284 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 -0.0006 5 6 4.7899 1.5009 -0.0003 6 6 5.1956 1.7966 1.4206 7 1 4.6304 1.3801 2.2414 8 6 6.2883 2.5987 1.6729 9 7 6.6427 2.8563 2.9129 10 14 7.2654 3.3195 0.2533 11 1 6.6955 4.6388 -0.1204 12 1 8.6821 3.4907 0.6640 13 1 7.1953 2.4020 -0.9122 14 6 3.6142 -0.7152 0.0043 15 6 4.8351 -1.5988 0.0107 16 6 2.3272 -1.1330 -0.0007 17 6 1.8600 -2.5657 -0.0006 18 7 1.7082 -3.0301 -1.3817 19 6 0.5748 -2.9274 -2.0990 20 8 -0.4688 -2.4430 -1.7102 21 6 0.8122 -3.5030 -3.4397 22 6 0.0326 -3.6697 -4.5731 23 6 0.5754 -4.2705 -5.6981 24 6 1.8911 -4.6943 -5.7003 25 6 2.6830 -4.5337 -4.5740 26 6 2.1523 -3.9396 -3.4402 27 6 2.6839 -3.6151 -2.0996 28 8 3.8129 -3.8382 -1.7118 29 1 -0.3634 -0.0006 1.0277 30 1 -0.3634 0.8902 -0.5133 31 1 -0.3633 -0.8897 -0.5142 32 1 5.6090 0.9989 -0.5151 33 1 4.5560 2.4339 -0.5130 34 1 7.4111 3.4209 3.0904 35 1 5.1339 -1.8130 -1.0155 36 1 5.6489 -1.0902 0.5274 37 1 4.6054 -2.5322 0.5246 38 1 0.9014 -2.6352 0.5136 39 1 2.5936 -3.1870 0.5131 40 1 -0.9949 -3.3370 -4.5782 41 1 -0.0329 -4.4054 -6.5802 42 1 2.3039 -5.1572 -6.5844 43 1 3.7091 -4.8705 -4.5800 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601931624.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:40 Heat of formation + Delta-G solvation = 35.425036 kcal Electronic energy + Delta-G solvation = -29138.329579 eV Core-core repulsion = 25150.264858 eV Total energy + Delta-G solvation = -3988.064721 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 2.68 seconds Orbital eigenvalues (eV) -43.35613 -42.21172 -39.66662 -39.36478 -36.95335 -36.01551 -34.46384 -34.18448 -32.30359 -32.04827 -31.04828 -29.38257 -27.88316 -26.84371 -26.09854 -24.43218 -23.57861 -23.11304 -21.11532 -20.56138 -20.34929 -19.31268 -18.70725 -18.28694 -17.84327 -17.39820 -17.01445 -16.40898 -16.33616 -15.86749 -15.50142 -15.33083 -15.15960 -15.08408 -14.97541 -14.95428 -14.70196 -14.14487 -14.12282 -13.89497 -13.69670 -13.51602 -13.22938 -13.13844 -13.12115 -12.90463 -12.72143 -12.61584 -12.53501 -12.06443 -11.87355 -11.59570 -11.42007 -11.24490 -10.96699 -10.87901 -10.15006 -10.12629 -9.98733 -9.36413 -8.47260 -6.58863 -0.92712 0.05849 0.86642 1.06670 1.25043 1.28135 1.30835 1.40148 1.71899 1.92903 1.97340 2.19986 2.66137 2.71063 2.84396 3.30574 3.59389 3.67493 3.73021 3.97004 4.09944 4.11400 4.24183 4.28195 4.29743 4.37356 4.43356 4.48969 4.53966 4.54790 4.60525 4.68601 4.77790 4.89150 4.92897 4.97945 5.03330 5.09936 5.14821 5.26889 5.30783 5.33069 5.69422 5.76905 5.78127 5.89315 6.21463 6.27472 6.43964 6.65075 6.87327 7.05156 8.69415 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015783 B = 0.003231 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.675475 B = 8662.635047 C = 9412.116287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.073 3.927 3 N -0.342 5.342 4 N -0.351 5.351 5 C 0.240 3.760 6 C -0.552 4.552 7 H 0.025 0.975 8 C 0.024 3.976 9 N -0.934 5.934 10 Si 0.950 3.050 11 H -0.264 1.264 12 H -0.269 1.269 13 H -0.240 1.240 14 C 0.108 3.892 15 C -0.081 4.081 16 C -0.296 4.296 17 C 0.203 3.797 18 N -0.572 5.572 19 C 0.569 3.431 20 O -0.481 6.481 21 C -0.160 4.160 22 C -0.047 4.047 23 C -0.086 4.086 24 C -0.086 4.086 25 C -0.049 4.049 26 C -0.160 4.160 27 C 0.566 3.434 28 O -0.483 6.483 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.104 0.896 32 H 0.066 0.934 33 H 0.045 0.955 34 H 0.275 0.725 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.097 0.903 38 H 0.113 0.887 39 H 0.107 0.893 40 H 0.155 0.845 41 H 0.179 0.821 42 H 0.178 0.822 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.539 -20.151 -21.667 31.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.093 4.093 3 N -0.165 5.165 4 N -0.130 5.130 5 C 0.120 3.880 6 C -0.590 4.590 7 H 0.044 0.956 8 C -0.176 4.176 9 N -0.572 5.572 10 Si 0.771 3.229 11 H -0.189 1.189 12 H -0.194 1.194 13 H -0.163 1.163 14 C -0.023 4.023 15 C -0.139 4.139 16 C -0.309 4.309 17 C 0.083 3.917 18 N -0.312 5.312 19 C 0.360 3.640 20 O -0.355 6.355 21 C -0.163 4.163 22 C -0.066 4.066 23 C -0.103 4.103 24 C -0.103 4.103 25 C -0.068 4.068 26 C -0.164 4.164 27 C 0.357 3.643 28 O -0.356 6.356 29 H 0.102 0.898 30 H 0.085 0.915 31 H 0.123 0.877 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.084 0.916 35 H 0.103 0.897 36 H 0.084 0.916 37 H 0.116 0.884 38 H 0.131 0.869 39 H 0.126 0.874 40 H 0.173 0.827 41 H 0.197 0.803 42 H 0.196 0.804 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -11.175 -18.492 -21.020 30.144 hybrid contribution 0.732 0.333 0.787 1.126 sum -10.442 -18.158 -20.233 29.122 Atomic orbital electron populations 1.20497 0.84765 1.04671 1.03713 1.22753 0.98042 0.90048 0.98416 1.77250 0.87509 1.24502 1.27215 1.48805 1.05387 1.04894 1.53892 1.19735 0.80577 0.90419 0.97257 1.21194 1.13981 1.32932 0.90877 0.95646 1.25809 0.97518 0.95242 0.99061 1.70015 1.27820 1.37905 1.21447 0.85696 0.78188 0.79894 0.79160 1.18927 1.19375 1.16305 1.21493 0.98046 0.84793 0.98017 1.20460 0.92323 0.97546 1.03543 1.19854 0.91007 0.96431 1.23619 1.19786 1.03936 0.89024 0.78963 1.46862 1.13451 1.55012 1.15902 1.18800 0.82430 0.76798 0.85948 1.90645 1.27431 1.41632 1.75819 1.20603 0.96183 1.04364 0.95162 1.21164 1.00552 0.94937 0.89951 1.21935 0.95864 0.94353 0.98164 1.21930 0.93589 0.96739 0.98081 1.21151 1.01514 0.94072 0.90059 1.20615 0.95475 1.05167 0.95141 1.18838 0.83892 0.75575 0.86019 1.90762 1.18139 1.50729 1.75979 0.89759 0.91458 0.87730 0.91625 0.93728 0.91561 0.89687 0.91567 0.88394 0.86888 0.87449 0.82750 0.80344 0.80437 0.83017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.50 10.12 71.24 0.72 -1.78 16 2 C 0.07 2.98 7.22 43.10 0.31 3.30 16 3 N -0.34 -16.64 12.58 -47.39 -0.60 -17.24 16 4 N -0.35 -17.13 3.60 -338.41 -1.22 -18.35 16 5 C 0.24 12.13 4.88 85.63 0.42 12.55 16 6 C -0.55 -32.80 9.94 25.60 0.25 -32.55 16 7 H 0.03 1.74 8.06 -2.91 -0.02 1.71 16 8 C 0.02 1.38 5.47 84.66 0.46 1.84 16 9 N -0.93 -57.89 13.96 21.45 0.30 -57.59 16 10 Si 0.95 42.35 27.47 68.60 1.88 44.23 16 11 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 12 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 13 H -0.24 -9.66 6.54 99.48 0.65 -9.01 16 14 C 0.11 4.54 6.93 41.41 0.29 4.82 16 15 C -0.08 -2.89 8.82 71.24 0.63 -2.26 16 16 C -0.30 -11.14 5.68 -20.15 -0.11 -11.25 16 17 C 0.20 5.83 5.68 85.63 0.49 6.32 16 18 N -0.57 -15.49 2.61 -767.03 -2.00 -17.49 16 19 C 0.57 14.66 8.02 86.82 0.70 15.35 16 20 O -0.48 -13.71 14.65 -3.55 -0.05 -13.76 16 21 C -0.16 -3.15 6.40 -20.00 -0.13 -3.28 16 22 C -0.05 -0.57 10.09 22.44 0.23 -0.35 16 23 C -0.09 -0.49 10.04 22.36 0.22 -0.27 16 24 C -0.09 -0.52 10.03 22.36 0.22 -0.29 16 25 C -0.05 -0.63 10.09 22.44 0.23 -0.40 16 26 C -0.16 -3.22 6.41 -20.00 -0.13 -3.35 16 27 C 0.57 14.95 8.02 86.82 0.70 15.65 16 28 O -0.48 -14.44 16.12 -3.55 -0.06 -14.50 16 29 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 30 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.10 3.14 4.60 -2.39 -0.01 3.13 16 32 H 0.07 3.04 6.74 -2.39 -0.02 3.02 16 33 H 0.04 2.23 7.57 -2.39 -0.02 2.22 16 34 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 35 H 0.08 2.85 7.50 -2.39 -0.02 2.83 16 36 H 0.07 2.57 7.74 -2.39 -0.02 2.55 16 37 H 0.10 3.08 7.12 -2.39 -0.02 3.06 16 38 H 0.11 2.88 7.74 -2.39 -0.02 2.86 16 39 H 0.11 2.84 6.96 -2.39 -0.02 2.82 16 40 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 41 H 0.18 -0.30 8.06 -2.91 -0.02 -0.32 16 42 H 0.18 -0.22 8.06 -2.91 -0.02 -0.25 16 43 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 Total: -1.00 -80.14 366.42 4.76 -75.38 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 1.00 Total: 15.27 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: 5.49 Total: 4.05 kcal Atomic # 7 Polarization: -107.16 SS G_CDS: -3.51 Total: -110.67 kcal Atomic # 8 Polarization: -28.15 SS G_CDS: -0.11 Total: -28.26 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 1.88 Total: 44.23 kcal Total: -80.14 4.76 -75.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601931624.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.803 kcal (2) G-P(sol) polarization free energy of solvation -80.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.68 seconds