Wall clock time and date at job start Sat Apr 11 2020 05:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 113.99959 * 2 1 4 4 C 1.53006 * 109.46703 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47137 * 65.00288 * 4 3 2 6 6 C 1.46498 * 119.99856 * 269.99855 * 5 4 3 7 7 C 1.50704 * 109.46805 * 269.99898 * 6 5 4 8 8 H 1.07989 * 120.00326 * 0.02562 * 7 6 5 9 9 C 1.37883 * 119.99467 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99712 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 120.00238 * 0.02562 * 9 7 6 12 12 H 1.48502 * 109.46918 * 89.99777 * 11 9 7 13 13 H 1.48494 * 109.46665 * 209.99516 * 11 9 7 14 14 H 1.48499 * 109.47030 * 329.99759 * 11 9 7 15 15 C 1.34771 * 119.99925 * 90.00050 * 5 4 3 16 16 O 1.21279 * 119.99967 * 180.02562 * 15 5 4 17 17 C 1.50697 * 120.00296 * 359.97438 * 15 5 4 18 18 S 1.81005 * 109.47515 * 180.02562 * 17 15 5 19 19 C 1.76199 * 100.00192 * 180.02562 * 18 17 15 20 20 N 1.32560 * 119.22229 * 0.27378 * 19 18 17 21 21 C 1.32253 * 120.73089 * 180.24405 * 20 19 18 22 22 C 1.50706 * 120.39866 * 179.76545 * 21 20 19 23 23 C 1.38622 * 119.20672 * 359.48621 * 21 20 19 24 24 C 1.38625 * 118.56874 * 0.25803 * 23 21 20 25 25 C 1.50694 * 120.39997 * 180.02562 * 24 23 21 26 26 N 1.32257 * 119.19852 * 359.97438 * 24 23 21 27 27 H 1.08997 * 109.47399 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47129 * 299.99945 * 1 2 3 29 29 H 1.09004 * 109.46925 * 59.99700 * 1 2 3 30 30 H 1.08994 * 109.47135 * 60.00274 * 3 2 1 31 31 H 1.09003 * 109.47457 * 299.99647 * 3 2 1 32 32 H 1.09001 * 109.47213 * 304.99870 * 4 3 2 33 33 H 1.09002 * 109.47051 * 185.00064 * 4 3 2 34 34 H 1.08998 * 109.47404 * 29.99921 * 6 5 4 35 35 H 1.08998 * 109.47354 * 150.00316 * 6 5 4 36 36 H 0.96998 * 120.00314 * 180.02562 * 10 9 7 37 37 H 1.09000 * 109.47387 * 60.00280 * 17 15 5 38 38 H 1.09006 * 109.47074 * 300.00295 * 17 15 5 39 39 H 1.08999 * 109.47015 * 269.72210 * 22 21 20 40 40 H 1.09000 * 109.46646 * 29.71363 * 22 21 20 41 41 H 1.09000 * 109.47248 * 149.72080 * 22 21 20 42 42 H 1.08002 * 120.71756 * 180.23235 * 23 21 20 43 43 H 1.09003 * 109.47269 * 89.99816 * 25 24 23 44 44 H 1.09002 * 109.47478 * 209.99889 * 25 24 23 45 45 H 1.09007 * 109.47158 * 329.99703 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 4.1062 -0.8927 -1.3404 7 6 5.5017 -1.2983 -0.9412 8 1 6.2201 -0.5464 -0.6498 9 6 5.8610 -2.6295 -0.9473 10 7 7.0786 -2.9835 -0.5985 11 14 4.6182 -3.9300 -1.4508 12 1 4.7047 -4.1563 -2.9160 13 1 4.9117 -5.1980 -0.7359 14 1 3.2505 -3.4695 -1.1010 15 6 4.2635 1.3328 -2.3200 16 8 4.6283 0.8190 -3.3562 17 6 4.1297 2.8310 -2.2281 18 16 4.5821 3.5756 -3.8147 19 6 4.3426 5.2789 -3.4327 20 7 3.9386 5.6189 -2.2168 21 6 3.7448 6.8880 -1.8993 22 6 3.2802 7.2657 -0.5163 23 6 3.9796 7.8672 -2.8521 24 6 4.4064 7.4773 -4.1120 25 6 4.6746 8.5073 -5.1789 26 7 4.5764 6.1906 -4.3662 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.6887 1.8463 0.8900 31 1 1.6887 1.8464 -0.8900 32 1 3.8508 0.5684 0.8427 33 1 3.9786 2.1764 0.0902 34 1 3.3858 -1.3633 -0.6714 35 1 3.9139 -1.2124 -2.3645 36 1 7.3315 -3.9199 -0.6031 37 1 4.7911 3.2077 -1.4479 38 1 3.0987 3.0896 -1.9867 39 1 2.1907 7.2895 -0.4928 40 1 3.6431 6.5307 0.2022 41 1 3.6708 8.2500 -0.2579 42 1 3.8328 8.9112 -2.6179 43 1 5.7166 8.8227 -5.1257 44 1 4.4753 8.0751 -6.1595 45 1 4.0257 9.3692 -5.0231 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610492253.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:06 Heat of formation + Delta-G solvation = -30.493451 kcal Electronic energy + Delta-G solvation = -26955.343440 eV Core-core repulsion = 23099.864230 eV Total energy + Delta-G solvation = -3855.479210 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.10526 -39.31195 -37.63406 -35.06032 -35.03911 -33.51120 -32.64288 -30.50552 -29.77345 -29.38591 -27.85078 -27.19642 -26.07408 -24.66994 -22.79886 -22.37704 -21.85514 -18.81489 -17.85769 -17.64619 -16.93191 -16.89611 -16.08271 -15.92457 -15.72898 -15.68537 -15.31519 -14.99818 -14.49040 -14.44863 -13.94493 -13.81161 -13.52244 -13.46113 -13.17433 -13.04741 -12.82790 -12.58777 -12.53943 -12.46936 -12.08959 -11.95696 -11.74930 -11.54313 -11.20112 -10.99076 -10.85447 -10.54158 -10.42495 -10.33589 -10.08734 -10.07038 -9.58805 -9.50789 -9.47364 -9.20027 -8.51310 -7.81954 -7.67921 -6.02130 -4.00321 0.59009 0.86018 1.16368 2.09805 3.15339 3.36399 3.39913 3.42329 3.46313 3.72754 3.82297 3.91995 4.05155 4.35735 4.47471 4.73369 4.81810 4.85787 4.97348 5.05232 5.14610 5.19816 5.20390 5.22448 5.26453 5.32350 5.35996 5.44224 5.45179 5.47804 5.50354 5.52289 5.59589 5.65166 5.72855 6.11527 6.13528 6.79717 6.85241 7.04124 7.27057 7.30763 7.68577 7.73976 8.15645 8.50775 8.80451 9.00857 9.58442 11.11249 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013973 B = 0.003016 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.428906 B = 9280.658186 C =10417.277437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.375 6.375 3 C 0.044 3.956 4 C 0.109 3.891 5 N -0.576 5.576 6 C 0.220 3.780 7 C -0.529 4.529 8 H 0.074 0.926 9 C 0.073 3.927 10 N -0.899 5.899 11 Si 0.873 3.127 12 H -0.274 1.274 13 H -0.286 1.286 14 H -0.262 1.262 15 C 0.522 3.478 16 O -0.524 6.524 17 C -0.149 4.149 18 S 0.095 5.905 19 C 0.291 3.709 20 N -0.535 5.535 21 C 0.191 3.809 22 C -0.106 4.106 23 C -0.248 4.248 24 C 0.191 3.809 25 C -0.105 4.105 26 N -0.509 5.509 27 H 0.083 0.917 28 H 0.037 0.963 29 H 0.036 0.964 30 H 0.056 0.944 31 H 0.045 0.955 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.046 0.954 35 H 0.034 0.966 36 H 0.264 0.736 37 H 0.120 0.880 38 H 0.115 0.885 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.144 0.856 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.553 24.282 0.591 27.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.293 6.293 3 C -0.034 4.034 4 C -0.015 4.015 5 N -0.307 5.307 6 C 0.100 3.900 7 C -0.567 4.567 8 H 0.092 0.908 9 C -0.129 4.129 10 N -0.538 5.538 11 Si 0.700 3.300 12 H -0.200 1.200 13 H -0.212 1.212 14 H -0.186 1.186 15 C 0.306 3.694 16 O -0.401 6.401 17 C -0.301 4.301 18 S 0.331 5.669 19 C -0.083 4.083 20 N -0.255 5.255 21 C 0.042 3.958 22 C -0.163 4.163 23 C -0.274 4.274 24 C 0.041 3.959 25 C -0.163 4.163 26 N -0.228 5.228 27 H 0.102 0.898 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.116 0.884 33 H 0.105 0.895 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.138 0.862 38 H 0.133 0.867 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.099 0.901 42 H 0.162 0.838 43 H 0.105 0.895 44 H 0.102 0.898 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.616 22.029 -1.164 24.931 hybrid contribution -1.285 1.140 1.328 2.172 sum -12.901 23.169 0.165 26.519 Atomic orbital electron populations 1.22712 0.81869 1.02601 0.99341 1.88060 1.18901 1.27166 1.95200 1.23121 0.95128 0.85349 0.99840 1.21619 0.91226 0.99469 0.89223 1.47742 1.64130 1.08918 1.09861 1.19751 0.97892 0.74242 0.98118 1.21346 0.96101 0.93598 1.45670 0.90816 1.24819 0.95160 0.98330 0.94588 1.69897 1.18195 1.17253 1.48444 0.86878 0.82486 0.81350 0.79276 1.19996 1.21195 1.18610 1.19431 0.78859 0.86461 0.84666 1.90727 1.46282 1.74045 1.29075 1.23911 1.07497 0.97772 1.00899 1.86788 1.80769 0.85610 1.13753 1.25669 0.93266 1.02006 0.87396 1.68734 1.17590 1.20241 1.18946 1.21727 0.89256 0.88341 0.96455 1.20790 1.02148 1.02638 0.90764 1.22413 1.07874 1.01823 0.95309 1.21769 0.88877 0.91466 0.93746 1.20784 1.03111 0.95493 0.96891 1.68361 1.18953 1.01177 1.34312 0.89810 0.94459 0.94495 0.92638 0.93643 0.88377 0.89529 0.93631 0.94779 0.92640 0.86214 0.86709 0.89654 0.89757 0.90089 0.83787 0.89549 0.89775 0.90107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.48 16 2 O -0.37 -5.95 9.53 -35.23 -0.34 -6.28 16 3 C 0.04 0.58 6.28 37.16 0.23 0.81 16 4 C 0.11 1.69 5.62 -4.04 -0.02 1.67 16 5 N -0.58 -11.88 2.42 -175.06 -0.42 -12.30 16 6 C 0.22 5.51 4.05 -5.19 -0.02 5.49 16 7 C -0.53 -15.40 9.94 -34.44 -0.34 -15.74 16 8 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 9 C 0.07 2.17 5.47 -17.82 -0.10 2.08 16 10 N -0.90 -28.18 13.96 55.43 0.77 -27.41 16 11 Si 0.87 22.15 27.47 -169.99 -4.67 17.48 16 12 H -0.27 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 14 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 15 C 0.52 10.72 7.69 -10.99 -0.08 10.64 16 16 O -0.52 -13.01 15.44 5.56 0.09 -12.92 16 17 C -0.15 -2.32 3.84 36.00 0.14 -2.18 16 18 S 0.09 1.56 21.38 -107.50 -2.30 -0.74 16 19 C 0.29 4.33 7.85 -90.84 -0.71 3.62 16 20 N -0.54 -7.03 9.08 -9.67 -0.09 -7.12 16 21 C 0.19 1.95 6.82 -82.27 -0.56 1.39 16 22 C -0.11 -0.67 10.22 36.01 0.37 -0.30 16 23 C -0.25 -2.22 9.53 -39.30 -0.37 -2.60 16 24 C 0.19 2.04 6.82 -82.27 -0.56 1.47 16 25 C -0.11 -0.70 10.22 36.00 0.37 -0.34 16 26 N -0.51 -7.24 10.34 -9.67 -0.10 -7.34 16 27 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.57 7.30 -51.93 -0.38 0.19 16 32 H 0.10 1.62 8.07 -51.93 -0.42 1.20 16 33 H 0.09 1.07 6.44 -51.93 -0.33 0.74 16 34 H 0.05 1.12 6.17 -51.93 -0.32 0.80 16 35 H 0.03 0.92 6.85 -51.93 -0.36 0.56 16 36 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 37 H 0.12 1.72 7.37 -51.92 -0.38 1.33 16 38 H 0.11 1.54 7.23 -51.91 -0.38 1.16 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.34 8.09 -51.93 -0.42 -0.08 16 42 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 43 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.08 0.34 8.10 -51.93 -0.42 -0.08 16 LS Contribution 390.90 15.07 5.89 5.89 Total: -1.00 -37.56 390.90 -8.53 -46.08 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -6.80 Total: -2.82 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: -0.56 Total: 7.48 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: 0.16 Total: -54.17 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.25 Total: -19.21 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.67 Total: 17.48 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -2.30 Total: -0.74 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.56 -8.53 -46.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610492253.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.591 kcal (2) G-P(sol) polarization free energy of solvation -37.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds