Wall clock time and date at job start Sat Apr 11 2020 05:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86796 * 120.00078 * 2 1 4 4 H 1.48501 * 109.46871 * 269.99718 * 3 2 1 5 5 H 1.48507 * 109.47134 * 29.99773 * 3 2 1 6 6 H 1.48501 * 109.47345 * 149.99666 * 3 2 1 7 7 C 1.38656 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00054 * 0.02562 * 7 2 1 9 9 O 1.34828 * 120.00059 * 180.02562 * 7 2 1 10 10 C 1.35753 * 116.99981 * 174.94686 * 9 7 2 11 11 C 1.38902 * 120.06803 * 5.54584 * 10 9 7 12 12 C 1.38081 * 119.92819 * 179.97438 * 11 10 9 13 13 C 1.38321 * 120.06793 * 359.74349 * 12 11 10 14 14 C 1.38276 * 120.14385 * 0.51246 * 13 12 11 15 15 C 1.50702 * 119.97226 * 179.76382 * 14 13 12 16 16 C 1.50705 * 109.47014 * 269.72364 * 15 14 13 17 17 O 1.21272 * 119.99731 * 0.02562 * 16 15 14 18 18 N 1.34775 * 119.99473 * 179.97438 * 16 15 14 19 19 C 1.39446 * 119.99581 * 174.88680 * 18 16 15 20 20 C 1.39389 * 120.14955 * 185.09496 * 19 18 16 21 21 C 1.38616 * 117.91125 * 179.97438 * 20 19 18 22 22 C 1.38778 * 118.03459 * 359.97438 * 21 20 19 23 23 C 1.50700 * 120.00408 * 180.02562 * 22 21 20 24 24 C 1.53000 * 117.49764 * 343.62123 * 23 22 21 25 25 C 1.52992 * 117.49694 * 274.99738 * 23 22 21 26 26 N 1.31833 * 119.99499 * 0.02562 * 22 21 20 27 27 N 1.28348 * 122.27764 * 359.73314 * 26 22 21 28 28 C 1.38127 * 120.06404 * 359.48845 * 14 13 12 29 29 H 0.96993 * 119.99924 * 0.02562 * 1 2 3 30 30 H 1.07993 * 120.03500 * 359.97438 * 11 10 9 31 31 H 1.07997 * 119.96354 * 180.02562 * 12 11 10 32 32 H 1.08004 * 119.93265 * 180.27428 * 13 12 11 33 33 H 1.09005 * 109.46535 * 29.72049 * 15 14 13 34 34 H 1.08993 * 109.47383 * 149.72303 * 15 14 13 35 35 H 0.96991 * 120.00645 * 354.89037 * 18 16 15 36 36 H 1.07995 * 121.04110 * 359.95665 * 20 19 18 37 37 H 1.07994 * 120.98466 * 179.97438 * 21 20 19 38 38 H 1.08999 * 115.54775 * 129.33100 * 23 22 21 39 39 H 1.09005 * 117.49582 * 359.97438 * 24 23 22 40 40 H 1.08996 * 117.49690 * 145.02433 * 24 23 22 41 41 H 1.09007 * 117.50319 * 214.97997 * 25 23 22 42 42 H 1.09004 * 117.50004 * 359.97438 * 25 23 22 43 43 H 1.08005 * 120.03430 * 180.23481 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0463 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4402 0.7001 7 6 2.0089 -1.2008 0.0005 8 1 1.4689 -2.1361 0.0005 9 8 3.3572 -1.2008 0.0011 10 6 3.9734 -2.4056 0.1081 11 6 3.2233 -3.5746 0.0948 12 6 3.8532 -4.7986 0.2034 13 6 5.2300 -4.8615 0.3199 14 6 5.9791 -3.6994 0.3387 15 6 7.4786 -3.7723 0.4712 16 6 7.8565 -3.7339 1.9296 17 8 6.9932 -3.6556 2.7778 18 7 9.1537 -3.7877 2.2911 19 6 9.5103 -3.6450 3.6316 20 6 10.8545 -3.5937 3.9968 21 6 11.1564 -3.4505 5.3421 22 6 10.1030 -3.3666 6.2417 23 6 10.3804 -3.2098 7.7146 24 6 11.7939 -3.5295 8.2051 25 6 10.6397 -4.4819 8.5239 26 7 8.8595 -3.4241 5.8076 27 7 8.5732 -3.5521 4.5630 28 6 5.3550 -2.4720 0.2306 29 1 -0.4850 0.8400 -0.0004 30 1 2.1487 -3.5262 -0.0003 31 1 3.2705 -5.7078 0.1927 32 1 5.7208 -5.8203 0.4002 33 1 7.8377 -4.7007 0.0271 34 1 7.9304 -2.9246 -0.0436 35 1 9.8392 -3.9255 1.6190 36 1 11.6362 -3.6636 3.2550 37 1 12.1811 -3.4056 5.6803 38 1 9.8470 -2.3983 8.2096 39 1 12.5231 -3.8537 7.4625 40 1 12.1908 -2.9282 9.0231 41 1 10.2773 -4.5073 9.5517 42 1 10.6092 -5.4324 7.9911 43 1 5.9409 -1.5647 0.2415 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760474904.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:48 Heat of formation + Delta-G solvation = 39.736790 kcal Electronic energy + Delta-G solvation = -27231.517170 eV Core-core repulsion = 23243.639421 eV Total energy + Delta-G solvation = -3987.877749 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.37628 -41.15380 -40.48302 -38.49995 -38.11829 -36.29085 -34.50167 -33.85265 -33.64410 -31.93208 -31.07020 -28.68369 -27.22623 -26.04376 -25.75012 -23.48295 -23.22710 -22.75562 -22.18517 -21.57997 -19.73069 -19.34211 -18.76843 -18.62675 -17.51458 -17.34839 -16.99932 -16.86401 -16.51517 -15.99658 -15.78910 -15.64829 -15.49187 -15.33554 -15.02255 -14.88233 -14.40985 -14.36999 -14.17326 -13.94340 -13.45331 -13.07295 -12.99066 -12.60294 -12.56224 -12.42528 -12.37146 -12.32485 -12.19182 -11.95618 -11.62509 -11.48176 -11.33679 -11.06915 -10.97767 -10.91544 -10.32100 -9.70762 -9.67746 -9.08451 -8.52152 -6.24844 -0.13709 -0.07913 0.44286 0.68061 1.26760 1.32428 1.48325 1.60047 1.74346 2.25686 2.55023 2.72796 2.81238 2.97503 3.11532 3.16249 3.44910 3.63661 3.71246 3.78533 3.90582 4.04316 4.06100 4.09984 4.14327 4.28134 4.35578 4.41520 4.52995 4.60526 4.62533 4.68757 4.77763 4.87003 4.95389 4.99695 5.04582 5.18458 5.22886 5.25334 5.37218 5.42976 5.62239 5.70110 5.74602 5.89788 6.21604 6.31887 6.81999 7.12391 7.56884 7.87584 8.59774 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013888 B = 0.002281 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.652224 B =12273.516040 C =13270.511532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.008 3.992 3 Si 0.972 3.028 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.269 1.269 7 C -0.399 4.399 8 H 0.079 0.921 9 O -0.247 6.247 10 C 0.116 3.884 11 C -0.239 4.239 12 C -0.080 4.080 13 C -0.169 4.169 14 C -0.032 4.032 15 C -0.081 4.081 16 C 0.499 3.501 17 O -0.516 6.516 18 N -0.637 5.637 19 C 0.275 3.725 20 C -0.129 4.129 21 C -0.085 4.085 22 C 0.062 3.938 23 C -0.130 4.130 24 C -0.139 4.139 25 C -0.168 4.168 26 N -0.266 5.266 27 N -0.292 5.292 28 C -0.180 4.180 29 H 0.285 0.715 30 H 0.106 0.894 31 H 0.140 0.860 32 H 0.151 0.849 33 H 0.155 0.845 34 H 0.137 0.863 35 H 0.444 0.556 36 H 0.206 0.794 37 H 0.198 0.802 38 H 0.115 0.885 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.109 0.891 42 H 0.088 0.912 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.423 -10.735 7.849 37.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.190 4.190 3 Si 0.794 3.206 4 H -0.183 1.183 5 H -0.191 1.191 6 H -0.194 1.194 7 C -0.476 4.476 8 H 0.097 0.903 9 O -0.155 6.155 10 C 0.067 3.933 11 C -0.258 4.258 12 C -0.098 4.098 13 C -0.187 4.187 14 C -0.033 4.033 15 C -0.120 4.120 16 C 0.287 3.713 17 O -0.386 6.386 18 N -0.289 5.289 19 C 0.035 3.965 20 C -0.160 4.160 21 C -0.113 4.113 22 C -0.087 4.087 23 C -0.150 4.150 24 C -0.177 4.177 25 C -0.206 4.206 26 N -0.107 5.107 27 N -0.138 5.138 28 C -0.199 4.199 29 H 0.094 0.906 30 H 0.124 0.876 31 H 0.158 0.842 32 H 0.168 0.832 33 H 0.173 0.827 34 H 0.155 0.845 35 H 0.286 0.714 36 H 0.223 0.777 37 H 0.215 0.785 38 H 0.133 0.867 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.127 0.873 42 H 0.107 0.893 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 32.964 -10.309 8.648 35.604 hybrid contribution 0.365 0.653 -0.517 0.909 sum 33.328 -9.656 8.131 35.639 Atomic orbital electron populations 1.69730 1.06815 1.29566 1.50326 1.25299 0.95954 1.02168 0.95592 0.85208 0.78531 0.77396 0.79500 1.18332 1.19140 1.19393 1.20713 0.78150 0.96124 1.52591 0.90315 1.83500 1.21227 1.27418 1.83375 1.19622 0.93206 0.85176 0.95264 1.21331 1.00166 0.93485 1.10864 1.21125 0.95602 0.96250 0.96796 1.21040 0.93222 0.98555 1.05889 1.19213 0.95451 0.91505 0.97082 1.20720 0.91333 1.09192 0.90750 1.21562 0.81784 0.75423 0.92563 1.90927 1.49516 1.44298 1.53822 1.43407 1.09725 1.70921 1.04884 1.20704 0.92509 0.95475 0.87769 1.22438 0.94481 1.00134 0.98907 1.22598 1.02411 0.94530 0.91802 1.22475 0.90793 0.97486 0.97948 1.20703 1.03525 1.02404 0.88367 1.23266 0.89362 1.01360 1.03667 1.23055 1.03291 0.93328 1.00916 1.72922 1.21020 1.09797 1.06931 1.73565 1.30200 1.14268 0.95790 1.20301 0.90654 0.99045 1.09919 0.90560 0.87575 0.84232 0.83175 0.82702 0.84467 0.71378 0.77668 0.78511 0.86733 0.86195 0.86069 0.87291 0.89296 0.86000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.72 13.96 21.61 0.30 -57.41 16 2 C 0.01 0.49 5.49 84.83 0.47 0.95 16 3 Si 0.97 48.11 28.62 68.60 1.96 50.07 16 4 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.27 -13.59 7.11 99.48 0.71 -12.88 16 7 C -0.40 -25.08 9.95 67.92 0.68 -24.41 16 8 H 0.08 5.18 5.44 -2.91 -0.02 5.16 16 9 O -0.25 -14.47 8.59 -22.75 -0.20 -14.66 16 10 C 0.12 5.92 6.65 22.58 0.15 6.07 16 11 C -0.24 -11.50 9.17 22.39 0.21 -11.30 16 12 C -0.08 -3.01 10.04 22.25 0.22 -2.79 16 13 C -0.17 -5.39 9.70 22.30 0.22 -5.18 16 14 C -0.03 -1.02 4.37 -19.88 -0.09 -1.11 16 15 C -0.08 -1.51 5.83 29.10 0.17 -1.34 16 16 C 0.50 12.71 7.78 87.66 0.68 13.39 16 17 O -0.52 -20.66 14.33 -3.00 -0.04 -20.71 16 18 N -0.64 -10.41 5.39 -308.08 -1.66 -12.07 16 19 C 0.27 6.01 7.51 132.96 1.00 7.01 16 20 C -0.13 -1.40 10.07 22.64 0.23 -1.17 16 21 C -0.09 -0.96 9.44 22.49 0.21 -0.75 16 22 C 0.06 1.26 6.54 42.69 0.28 1.54 16 23 C -0.13 -1.95 6.23 -11.54 -0.07 -2.02 16 24 C -0.14 -0.88 9.82 30.60 0.30 -0.58 16 25 C -0.17 -1.94 10.23 30.59 0.31 -1.63 16 26 N -0.27 -8.46 11.42 -47.57 -0.54 -9.00 16 27 N -0.29 -9.88 9.09 -54.93 -0.50 -10.38 16 28 C -0.18 -7.49 9.65 22.39 0.22 -7.27 16 29 H 0.28 16.28 8.31 -92.71 -0.77 15.51 16 30 H 0.11 5.56 5.64 -2.91 -0.02 5.55 16 31 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 32 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 33 H 0.16 1.38 8.08 -2.38 -0.02 1.37 16 34 H 0.14 1.76 8.08 -2.39 -0.02 1.74 16 35 H 0.44 1.76 8.72 -92.72 -0.81 0.95 16 36 H 0.21 -0.13 8.06 -2.91 -0.02 -0.16 16 37 H 0.20 0.32 6.36 -2.91 -0.02 0.30 16 38 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.12 0.22 6.44 -2.38 -0.02 0.20 16 40 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.11 1.09 8.14 -2.38 -0.02 1.07 16 42 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 43 H 0.12 4.74 8.06 -2.91 -0.02 4.72 16 Total: -1.00 -97.70 373.04 4.76 -92.94 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: 0.27 Total: 11.80 kcal Atomic # 6 Polarization: -35.76 SS G_CDS: 5.18 Total: -30.58 kcal Atomic # 7 Polarization: -86.47 SS G_CDS: -2.40 Total: -88.87 kcal Atomic # 8 Polarization: -35.13 SS G_CDS: -0.24 Total: -35.37 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 1.96 Total: 50.07 kcal Total: -97.70 4.76 -92.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760474904.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.677 kcal (2) G-P(sol) polarization free energy of solvation -97.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds