Wall clock time and date at job start Sat Apr 11 2020 05:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29878 * 119.99740 * 2 1 4 4 N 1.40095 * 119.99883 * 359.97438 * 3 2 1 5 5 C 1.34779 * 119.99643 * 180.02562 * 4 3 2 6 6 O 1.21571 * 120.00192 * 0.02562 * 5 4 3 7 7 C 1.48086 * 120.00004 * 179.97438 * 5 4 3 8 8 C 1.39358 * 119.72799 * 180.25590 * 7 5 4 9 9 C 1.38558 * 119.05500 * 180.27223 * 8 7 5 10 10 C 1.38644 * 118.49362 * 359.48438 * 9 8 7 11 11 C 1.38540 * 119.35997 * 0.25026 * 10 9 8 12 12 C 1.50707 * 119.54781 * 180.02562 * 11 10 9 13 13 N 1.31535 * 120.90983 * 0.02562 * 11 10 9 14 14 C 1.47328 * 120.00181 * 179.97438 * 2 1 3 15 15 C 1.39827 * 120.08615 * 359.72890 * 14 2 1 16 16 C 1.37716 * 119.91097 * 179.74154 * 15 14 2 17 17 C 1.39090 * 120.08360 * 0.50863 * 16 15 14 18 18 O 1.35648 * 119.90878 * 179.74121 * 17 16 15 19 19 C 1.34802 * 117.00128 * 174.46931 * 18 17 16 20 20 H 1.07997 * 119.99767 * 5.06013 * 19 18 17 21 21 C 1.38644 * 120.00105 * 185.05387 * 19 18 17 22 22 N 1.31554 * 119.99888 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99877 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47334 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46695 * 120.00439 * 23 21 19 26 26 H 1.48497 * 109.47197 * 240.00564 * 23 21 19 27 27 C 1.39081 * 120.17914 * 359.76799 * 17 16 15 28 28 C 1.37706 * 120.09173 * 359.97328 * 27 17 16 29 29 H 1.09003 * 109.46867 * 90.00508 * 1 2 3 30 30 H 1.08999 * 109.46802 * 209.99855 * 1 2 3 31 31 H 1.08996 * 109.47103 * 329.99943 * 1 2 3 32 32 H 0.97001 * 120.00326 * 359.97438 * 4 3 2 33 33 H 1.08003 * 120.47064 * 0.02562 * 8 7 5 34 34 H 1.08001 * 120.75641 * 179.75409 * 9 8 7 35 35 H 1.08006 * 120.32107 * 180.27444 * 10 9 8 36 36 H 1.09001 * 109.46976 * 89.99739 * 12 11 10 37 37 H 1.08999 * 109.47008 * 209.99927 * 12 11 10 38 38 H 1.09004 * 109.47048 * 329.99877 * 12 11 10 39 39 H 1.08006 * 120.04907 * 359.97438 * 15 14 2 40 40 H 1.07994 * 119.95814 * 180.25201 * 16 15 14 41 41 H 0.97005 * 120.00162 * 179.97438 * 22 21 19 42 42 H 1.08005 * 119.95670 * 179.97438 * 27 17 16 43 43 H 1.08000 * 120.04726 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1564 1.1248 0.0000 4 7 1.4558 2.3380 -0.0005 5 6 2.1297 3.5052 -0.0011 6 8 3.3454 3.5053 -0.0015 7 6 1.3893 4.7877 -0.0022 8 6 2.0918 5.9913 -0.0082 9 6 1.3850 7.1830 -0.0034 10 6 -0.0005 7.1303 -0.0038 11 6 -0.6334 5.8979 -0.0037 12 6 -2.1391 5.8357 -0.0047 13 7 0.0619 4.7813 -0.0026 14 6 2.2437 -1.2759 0.0006 15 6 1.5465 -2.4879 0.0068 16 6 2.2387 -3.6784 0.0020 17 6 3.6296 -3.6762 0.0015 18 8 4.3078 -4.8509 0.0020 19 6 5.6491 -4.7832 -0.1142 20 1 6.1428 -3.8227 -0.1200 21 6 6.3948 -5.9467 -0.2262 22 7 5.7934 -7.1167 -0.2196 23 14 8.2535 -5.8528 -0.3880 24 1 8.6808 -4.4307 -0.3697 25 1 8.8860 -6.5740 0.7456 26 1 8.6712 -6.4791 -1.6680 27 6 4.3268 -2.4728 0.0011 28 6 3.6420 -1.2780 0.0006 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5138 32 1 0.4858 2.3380 -0.0013 33 1 3.1718 5.9950 -0.0123 34 1 1.9015 8.1315 -0.0038 35 1 -0.5808 8.0412 -0.0047 36 1 -2.5014 5.8202 -1.0327 37 1 -2.4658 4.9317 0.5093 38 1 -2.5393 6.7102 0.5084 39 1 0.4664 -2.4904 0.0117 40 1 1.7009 -4.6149 0.0027 41 1 6.3151 -7.9307 -0.2983 42 1 5.4069 -2.4752 0.0012 43 1 4.1842 -0.3440 0.0007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794566107.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:57 Heat of formation + Delta-G solvation = 41.165320 kcal Electronic energy + Delta-G solvation = -26756.619587 eV Core-core repulsion = 22768.803783 eV Total energy + Delta-G solvation = -3987.815804 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.97058 -39.33245 -38.97217 -37.46433 -35.95627 -33.49575 -33.37773 -32.56221 -32.07189 -30.46450 -28.81126 -28.17241 -28.07461 -25.61167 -24.96494 -22.83955 -22.21562 -21.81886 -20.82414 -19.59432 -18.36095 -18.03207 -16.98948 -16.90108 -16.54878 -15.88615 -15.56597 -15.30499 -14.78304 -14.61796 -14.41256 -14.34147 -14.08389 -13.92990 -13.79587 -13.60377 -13.58979 -12.87194 -12.83902 -12.74502 -12.52960 -12.40728 -12.17206 -11.78406 -11.75027 -11.29943 -11.12878 -10.92323 -10.71254 -10.53778 -10.46851 -10.40430 -9.94200 -9.87291 -9.44400 -9.36159 -9.11673 -8.65297 -8.26756 -7.09518 -6.56494 -4.12090 0.22022 0.74302 1.41565 2.22838 2.48558 2.50468 2.96772 3.11378 3.13770 3.17407 3.54079 3.58069 3.90183 4.18100 4.32845 4.50253 4.56643 4.61118 4.69170 4.90869 5.00312 5.02799 5.07017 5.10540 5.11694 5.13503 5.20884 5.42674 5.51771 5.59413 5.65307 5.67359 5.76136 5.87210 6.06313 6.12576 6.21464 6.37918 6.58632 6.86484 6.96926 7.07884 7.14547 7.25992 7.35542 7.36238 7.66026 7.71430 7.89749 8.50709 8.89119 9.56018 10.60449 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022814 B = 0.001875 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.010020 B =14928.025046 C =16128.604155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.177 3.823 3 N -0.270 5.270 4 N -0.566 5.566 5 C 0.585 3.415 6 O -0.501 6.501 7 C 0.092 3.908 8 C -0.115 4.115 9 C -0.076 4.076 10 C -0.151 4.151 11 C 0.126 3.874 12 C -0.105 4.105 13 N -0.464 5.464 14 C -0.165 4.165 15 C -0.042 4.042 16 C -0.198 4.198 17 C 0.168 3.832 18 O -0.166 6.166 19 C -0.391 4.391 20 H 0.098 0.902 21 C 0.041 3.959 22 N -0.855 5.855 23 Si 0.943 3.057 24 H -0.264 1.264 25 H -0.275 1.275 26 H -0.274 1.274 27 C -0.243 4.243 28 C -0.020 4.020 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.064 0.936 32 H 0.391 0.609 33 H 0.151 0.849 34 H 0.145 0.855 35 H 0.141 0.859 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.272 0.728 42 H 0.131 0.869 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.380 25.316 0.218 29.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.009 4.009 3 N -0.077 5.077 4 N -0.307 5.307 5 C 0.369 3.631 6 O -0.373 6.373 7 C -0.048 4.048 8 C -0.136 4.136 9 C -0.102 4.102 10 C -0.171 4.171 11 C -0.014 4.014 12 C -0.162 4.162 13 N -0.177 5.177 14 C -0.169 4.169 15 C -0.062 4.062 16 C -0.217 4.217 17 C 0.112 3.888 18 O -0.067 6.067 19 C -0.467 4.467 20 H 0.115 0.885 21 C -0.165 4.165 22 N -0.489 5.489 23 Si 0.768 3.232 24 H -0.188 1.188 25 H -0.200 1.200 26 H -0.200 1.200 27 C -0.262 4.262 28 C -0.040 4.040 29 H 0.103 0.897 30 H 0.108 0.892 31 H 0.083 0.917 32 H 0.231 0.769 33 H 0.169 0.831 34 H 0.162 0.838 35 H 0.159 0.841 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.137 0.863 40 H 0.140 0.860 41 H 0.082 0.918 42 H 0.149 0.851 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -14.077 24.560 0.226 28.309 hybrid contribution 0.048 0.723 -0.082 0.729 sum -14.029 25.283 0.143 28.914 Atomic orbital electron populations 1.21358 0.92990 1.03815 1.03617 1.23374 0.93088 0.91762 0.92692 1.75304 1.22580 0.90251 1.19586 1.46595 1.09027 1.03218 1.71906 1.17526 0.86698 0.81513 0.77325 1.90818 1.12583 1.86500 1.47383 1.21037 0.89687 0.93645 1.00426 1.22132 1.02618 0.91500 0.97345 1.21648 0.94066 0.98691 0.95785 1.22210 0.95398 0.99140 1.00332 1.21329 0.97120 0.88000 0.94961 1.20756 0.88096 1.03907 1.03460 1.67398 1.07054 1.31894 1.11359 1.17633 0.92736 0.88754 1.17770 1.20715 0.98370 0.90680 0.96460 1.20087 0.91376 0.98010 1.12246 1.19590 0.91722 0.86377 0.91137 1.83926 1.21305 1.25313 1.76159 1.21504 0.78342 0.95055 1.51751 0.88508 1.25360 1.00864 0.94115 0.96152 1.70046 1.36564 0.97596 1.44662 0.85601 0.80148 0.79118 0.78375 1.18834 1.20008 1.19993 1.21133 1.00884 0.91724 1.12480 1.21016 0.92794 0.97487 0.92721 0.89721 0.89195 0.91688 0.76850 0.83091 0.83758 0.84124 0.90065 0.90160 0.90392 0.86306 0.85994 0.91805 0.85123 0.86024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.04 36.01 0.33 -1.40 16 2 C 0.18 2.76 7.10 -79.72 -0.57 2.19 16 3 N -0.27 -4.71 10.15 35.10 0.36 -4.35 16 4 N -0.57 -8.48 6.10 30.59 0.19 -8.30 16 5 C 0.58 9.06 7.93 -12.22 -0.10 8.96 16 6 O -0.50 -9.41 16.66 5.30 0.09 -9.33 16 7 C 0.09 1.10 6.75 -83.02 -0.56 0.54 16 8 C -0.12 -1.11 9.63 -39.05 -0.38 -1.49 16 9 C -0.08 -0.50 10.17 -39.31 -0.40 -0.90 16 10 C -0.15 -0.90 9.75 -39.32 -0.38 -1.29 16 11 C 0.13 0.97 6.78 -82.60 -0.56 0.41 16 12 C -0.10 -0.48 10.17 36.01 0.37 -0.12 16 13 N -0.46 -4.89 9.45 -6.07 -0.06 -4.95 16 14 C -0.16 -2.94 5.87 -105.01 -0.62 -3.55 16 15 C -0.04 -0.70 9.35 -39.18 -0.37 -1.07 16 16 C -0.20 -3.94 9.97 -39.46 -0.39 -4.34 16 17 C 0.17 3.95 6.65 -38.95 -0.26 3.70 16 18 O -0.17 -4.59 9.75 0.44 0.00 -4.59 16 19 C -0.39 -10.67 9.48 30.88 0.29 -10.38 16 20 H 0.10 2.47 5.18 -52.49 -0.27 2.20 16 21 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 22 N -0.86 -24.40 13.67 55.48 0.76 -23.64 16 23 Si 0.94 20.22 29.55 -169.99 -5.02 15.20 16 24 H -0.26 -5.48 7.11 56.52 0.40 -5.07 16 25 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 26 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 27 C -0.24 -5.33 9.15 -39.46 -0.36 -5.69 16 28 C -0.02 -0.40 9.57 -39.18 -0.37 -0.77 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.09 0.86 6.45 -51.93 -0.34 0.52 16 31 H 0.06 0.63 6.35 -51.93 -0.33 0.30 16 32 H 0.39 4.83 5.76 -182.60 -1.05 3.78 16 33 H 0.15 1.42 7.64 -52.48 -0.40 1.02 16 34 H 0.14 0.51 8.06 -52.49 -0.42 0.08 16 35 H 0.14 0.40 8.06 -52.48 -0.42 -0.02 16 36 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.20 8.08 -51.93 -0.42 -0.22 16 39 H 0.12 1.53 6.34 -52.48 -0.33 1.20 16 40 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 41 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.13 2.88 5.62 -52.48 -0.29 2.59 16 43 H 0.12 2.39 7.55 -52.49 -0.40 1.99 16 LS Contribution 375.40 15.07 5.66 5.66 Total: -1.00 -34.03 375.40 -7.96 -41.99 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -5.51 Total: 6.50 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -4.43 Total: -14.19 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: 1.24 Total: -41.23 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: 0.09 Total: -13.92 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.03 -7.96 -41.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794566107.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.152 kcal (2) G-P(sol) polarization free energy of solvation -34.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds