Wall clock time and date at job start Sat Apr 11 2020 05:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29878 * 119.99740 * 2 1 4 4 N 1.40095 * 119.99883 * 359.97438 * 3 2 1 5 5 C 1.34779 * 119.99643 * 180.02562 * 4 3 2 6 6 O 1.21571 * 120.00192 * 0.02562 * 5 4 3 7 7 C 1.48086 * 120.00004 * 179.97438 * 5 4 3 8 8 C 1.39358 * 119.72799 * 180.25590 * 7 5 4 9 9 C 1.38558 * 119.05500 * 180.27223 * 8 7 5 10 10 C 1.38644 * 118.49362 * 359.48438 * 9 8 7 11 11 C 1.38540 * 119.35997 * 0.25026 * 10 9 8 12 12 C 1.50707 * 119.54781 * 180.02562 * 11 10 9 13 13 N 1.31535 * 120.90983 * 0.02562 * 11 10 9 14 14 C 1.47328 * 120.00181 * 179.97438 * 2 1 3 15 15 C 1.39827 * 120.08615 * 359.72890 * 14 2 1 16 16 C 1.37716 * 119.91097 * 179.74154 * 15 14 2 17 17 C 1.39090 * 120.08360 * 0.50863 * 16 15 14 18 18 O 1.35648 * 119.90878 * 179.74121 * 17 16 15 19 19 C 1.34802 * 117.00128 * 174.46931 * 18 17 16 20 20 H 1.07997 * 119.99767 * 5.06013 * 19 18 17 21 21 C 1.38644 * 120.00105 * 185.05387 * 19 18 17 22 22 N 1.31554 * 119.99888 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99877 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47334 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46695 * 120.00439 * 23 21 19 26 26 H 1.48497 * 109.47197 * 240.00564 * 23 21 19 27 27 C 1.39081 * 120.17914 * 359.76799 * 17 16 15 28 28 C 1.37706 * 120.09173 * 359.97328 * 27 17 16 29 29 H 1.09003 * 109.46867 * 90.00508 * 1 2 3 30 30 H 1.08999 * 109.46802 * 209.99855 * 1 2 3 31 31 H 1.08996 * 109.47103 * 329.99943 * 1 2 3 32 32 H 0.97001 * 120.00326 * 359.97438 * 4 3 2 33 33 H 1.08003 * 120.47064 * 0.02562 * 8 7 5 34 34 H 1.08001 * 120.75641 * 179.75409 * 9 8 7 35 35 H 1.08006 * 120.32107 * 180.27444 * 10 9 8 36 36 H 1.09001 * 109.46976 * 89.99739 * 12 11 10 37 37 H 1.08999 * 109.47008 * 209.99927 * 12 11 10 38 38 H 1.09004 * 109.47048 * 329.99877 * 12 11 10 39 39 H 1.08006 * 120.04907 * 359.97438 * 15 14 2 40 40 H 1.07994 * 119.95814 * 180.25201 * 16 15 14 41 41 H 0.97005 * 120.00162 * 179.97438 * 22 21 19 42 42 H 1.08005 * 119.95670 * 179.97438 * 27 17 16 43 43 H 1.08000 * 120.04726 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1564 1.1248 0.0000 4 7 1.4558 2.3380 -0.0005 5 6 2.1297 3.5052 -0.0011 6 8 3.3454 3.5053 -0.0015 7 6 1.3893 4.7877 -0.0022 8 6 2.0918 5.9913 -0.0082 9 6 1.3850 7.1830 -0.0034 10 6 -0.0005 7.1303 -0.0038 11 6 -0.6334 5.8979 -0.0037 12 6 -2.1391 5.8357 -0.0047 13 7 0.0619 4.7813 -0.0026 14 6 2.2437 -1.2759 0.0006 15 6 1.5465 -2.4879 0.0068 16 6 2.2387 -3.6784 0.0020 17 6 3.6296 -3.6762 0.0015 18 8 4.3078 -4.8509 0.0020 19 6 5.6491 -4.7832 -0.1142 20 1 6.1428 -3.8227 -0.1200 21 6 6.3948 -5.9467 -0.2262 22 7 5.7934 -7.1167 -0.2196 23 14 8.2535 -5.8528 -0.3880 24 1 8.6808 -4.4307 -0.3697 25 1 8.8860 -6.5740 0.7456 26 1 8.6712 -6.4791 -1.6680 27 6 4.3268 -2.4728 0.0011 28 6 3.6420 -1.2780 0.0006 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5138 32 1 0.4858 2.3380 -0.0013 33 1 3.1718 5.9950 -0.0123 34 1 1.9015 8.1315 -0.0038 35 1 -0.5808 8.0412 -0.0047 36 1 -2.5014 5.8202 -1.0327 37 1 -2.4658 4.9317 0.5093 38 1 -2.5393 6.7102 0.5084 39 1 0.4664 -2.4904 0.0117 40 1 1.7009 -4.6149 0.0027 41 1 6.3151 -7.9307 -0.2983 42 1 5.4069 -2.4752 0.0012 43 1 4.1842 -0.3440 0.0007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794566107.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:56 Heat of formation + Delta-G solvation = 18.520689 kcal Electronic energy + Delta-G solvation = -26757.601531 eV Core-core repulsion = 22768.803783 eV Total energy + Delta-G solvation = -3988.797749 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.75338 -40.89676 -40.19395 -38.95997 -37.46432 -34.59864 -34.15409 -34.03757 -33.18528 -32.05263 -30.22832 -29.31506 -28.66978 -27.46809 -25.89655 -23.93119 -23.47588 -23.11188 -21.97201 -20.94080 -19.82331 -19.43857 -18.76596 -17.80279 -17.37333 -16.76396 -16.60480 -16.49867 -16.28408 -16.08037 -15.68654 -15.62241 -15.38881 -15.31544 -14.87321 -14.78187 -14.56201 -14.17166 -14.07245 -13.59609 -13.31634 -13.29610 -13.11536 -13.09879 -12.92083 -12.79083 -12.67222 -12.50107 -12.32672 -12.12556 -11.65495 -11.35104 -10.99439 -10.98339 -10.90737 -10.67939 -10.21147 -10.01366 -9.87598 -8.75914 -8.52341 -6.18633 -0.54301 0.01304 0.17278 0.58780 1.24314 1.34895 1.38142 1.43857 1.52428 1.82633 2.14980 2.73669 2.81773 2.83460 3.15708 3.40037 3.51818 3.55946 3.79535 3.89794 3.93844 4.03744 4.10104 4.15006 4.28337 4.39720 4.47417 4.56113 4.61446 4.72069 4.76124 4.81119 4.84130 4.96686 5.05745 5.07920 5.09226 5.16870 5.20902 5.24723 5.54071 5.60610 5.61559 5.65251 5.97852 5.98774 6.07676 6.33537 6.74226 6.92511 7.32739 7.68306 8.69702 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022814 B = 0.001875 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.010020 B =14928.025046 C =16128.604155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.175 3.825 3 N -0.306 5.306 4 N -0.558 5.558 5 C 0.580 3.420 6 O -0.549 6.549 7 C 0.061 3.939 8 C -0.125 4.125 9 C -0.071 4.071 10 C -0.133 4.133 11 C 0.114 3.886 12 C -0.103 4.103 13 N -0.480 5.480 14 C -0.146 4.146 15 C -0.020 4.020 16 C -0.200 4.200 17 C 0.136 3.864 18 O -0.217 6.217 19 C -0.416 4.416 20 H 0.100 0.900 21 C -0.016 4.016 22 N -0.911 5.911 23 Si 1.016 2.984 24 H -0.257 1.257 25 H -0.266 1.266 26 H -0.266 1.266 27 C -0.251 4.251 28 C -0.032 4.032 29 H 0.106 0.894 30 H 0.112 0.888 31 H 0.078 0.922 32 H 0.405 0.595 33 H 0.143 0.857 34 H 0.180 0.820 35 H 0.183 0.817 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.104 0.896 39 H 0.175 0.825 40 H 0.133 0.867 41 H 0.275 0.725 42 H 0.118 0.882 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.876 29.357 0.149 34.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.011 4.011 3 N -0.113 5.113 4 N -0.301 5.301 5 C 0.367 3.633 6 O -0.424 6.424 7 C -0.077 4.077 8 C -0.147 4.147 9 C -0.096 4.096 10 C -0.152 4.152 11 C -0.027 4.027 12 C -0.160 4.160 13 N -0.194 5.194 14 C -0.149 4.149 15 C -0.040 4.040 16 C -0.219 4.219 17 C 0.083 3.917 18 O -0.121 6.121 19 C -0.492 4.492 20 H 0.118 0.882 21 C -0.215 4.215 22 N -0.548 5.548 23 Si 0.835 3.165 24 H -0.180 1.180 25 H -0.191 1.191 26 H -0.191 1.191 27 C -0.270 4.270 28 C -0.052 4.052 29 H 0.124 0.876 30 H 0.131 0.869 31 H 0.097 0.903 32 H 0.247 0.753 33 H 0.160 0.840 34 H 0.197 0.803 35 H 0.200 0.800 36 H 0.109 0.891 37 H 0.092 0.908 38 H 0.123 0.877 39 H 0.192 0.808 40 H 0.151 0.849 41 H 0.084 0.916 42 H 0.136 0.864 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -17.630 28.648 0.159 33.639 hybrid contribution 0.751 -0.029 -0.048 0.753 sum -16.879 28.620 0.111 33.226 Atomic orbital electron populations 1.21481 0.88822 1.05665 1.05507 1.23500 0.95617 0.90088 0.91938 1.75194 1.24978 0.91731 1.19385 1.46521 1.09608 1.02327 1.71607 1.18262 0.86538 0.82664 0.75856 1.90775 1.14638 1.87330 1.49653 1.20600 0.90584 0.92265 1.04225 1.22243 1.02542 0.92155 0.97743 1.22063 0.94588 0.98685 0.94269 1.22722 0.95325 1.00040 0.97130 1.22005 0.98564 0.87972 0.94133 1.20867 0.85806 1.04936 1.04386 1.67314 1.06233 1.33685 1.12175 1.18034 0.92007 0.90747 1.14134 1.21194 1.00849 0.88547 0.93399 1.20453 0.90035 0.99982 1.11457 1.20146 0.93291 0.85947 0.92305 1.83905 1.21465 1.27105 1.79662 1.21863 0.78988 0.95621 1.52709 0.88242 1.26530 1.05922 0.93468 0.95582 1.70161 1.38566 0.98397 1.47678 0.84565 0.73705 0.79455 0.78743 1.18013 1.19064 1.19079 1.21125 1.00550 0.92305 1.13055 1.21089 0.94256 0.96453 0.93447 0.87575 0.86934 0.90315 0.75253 0.83962 0.80288 0.79961 0.89073 0.90773 0.87703 0.80765 0.84862 0.91563 0.86441 0.86299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 9.04 71.24 0.64 -2.06 16 2 C 0.18 5.06 7.10 45.24 0.32 5.38 16 3 N -0.31 -10.45 10.15 -42.87 -0.44 -10.89 16 4 N -0.56 -16.37 6.10 -175.39 -1.07 -17.44 16 5 C 0.58 18.30 7.93 86.86 0.69 18.99 16 6 O -0.55 -21.61 16.66 -3.94 -0.07 -21.67 16 7 C 0.06 1.45 6.75 41.89 0.28 1.73 16 8 C -0.13 -2.33 9.63 22.62 0.22 -2.11 16 9 C -0.07 -0.70 10.17 22.44 0.23 -0.47 16 10 C -0.13 -1.00 9.75 22.44 0.22 -0.78 16 11 C 0.11 1.38 6.78 42.68 0.29 1.67 16 12 C -0.10 -0.54 10.17 71.24 0.72 0.19 16 13 N -0.48 -9.29 9.45 -173.11 -1.64 -10.92 16 14 C -0.15 -4.95 5.87 -20.12 -0.12 -5.07 16 15 C -0.02 -0.62 9.35 22.53 0.21 -0.41 16 16 C -0.20 -7.89 9.97 22.35 0.22 -7.66 16 17 C 0.14 6.67 6.65 22.68 0.15 6.83 16 18 O -0.22 -12.79 9.75 -21.34 -0.21 -13.00 16 19 C -0.42 -24.24 9.48 67.92 0.64 -23.60 16 20 H 0.10 5.46 5.18 -2.91 -0.02 5.44 16 21 C -0.02 -0.91 5.49 84.83 0.47 -0.45 16 22 N -0.91 -54.96 13.67 21.61 0.30 -54.67 16 23 Si 1.02 43.28 29.55 68.60 2.03 45.31 16 24 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 25 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 26 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 27 C -0.25 -11.59 9.15 22.35 0.20 -11.39 16 28 C -0.03 -1.31 9.57 22.53 0.22 -1.09 16 29 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.11 1.48 6.45 -2.39 -0.02 1.46 16 31 H 0.08 1.20 6.35 -2.39 -0.02 1.18 16 32 H 0.40 9.34 5.76 -213.32 -1.23 8.11 16 33 H 0.14 2.77 7.64 -2.91 -0.02 2.75 16 34 H 0.18 0.46 8.06 -2.91 -0.02 0.44 16 35 H 0.18 -0.14 8.06 -2.91 -0.02 -0.16 16 36 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.10 0.00 8.08 -2.38 -0.02 -0.02 16 39 H 0.18 3.45 6.34 -2.91 -0.02 3.43 16 40 H 0.13 4.93 8.06 -2.91 -0.02 4.90 16 41 H 0.28 15.13 8.31 -92.70 -0.77 14.36 16 42 H 0.12 5.61 5.62 -2.91 -0.02 5.60 16 43 H 0.12 4.86 7.55 -2.91 -0.02 4.84 16 Total: -1.00 -83.22 375.40 4.37 -78.85 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: -0.15 Total: 24.71 kcal Atomic # 6 Polarization: -25.90 SS G_CDS: 5.61 Total: -20.29 kcal Atomic # 7 Polarization: -91.06 SS G_CDS: -2.85 Total: -93.91 kcal Atomic # 8 Polarization: -34.40 SS G_CDS: -0.27 Total: -34.67 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -83.22 4.37 -78.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794566107.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.375 kcal (2) G-P(sol) polarization free energy of solvation -83.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds