Wall clock time and date at job start Sat Apr 11 2020 05:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86796 * 120.00044 * 2 1 4 4 H 1.48502 * 109.47335 * 239.99697 * 3 2 1 5 5 H 1.48505 * 109.46894 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47275 * 119.99481 * 3 2 1 7 7 C 1.38659 * 119.99999 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99473 * 180.02562 * 7 2 1 9 9 O 1.34828 * 119.99628 * 0.02562 * 7 2 1 10 10 C 1.35757 * 116.99317 * 185.02181 * 9 7 2 11 11 C 1.38951 * 120.02909 * 174.62745 * 10 9 7 12 12 C 1.38130 * 120.06992 * 180.02562 * 11 10 9 13 13 C 1.38199 * 120.13981 * 359.97438 * 12 11 10 14 14 C 1.38931 * 120.06415 * 0.02562 * 13 12 11 15 15 N 1.39926 * 120.03377 * 179.97438 * 14 13 12 16 16 C 1.34771 * 120.00054 * 35.12098 * 15 14 13 17 17 O 1.21289 * 120.00243 * 355.50211 * 16 15 14 18 18 C 1.50705 * 119.99806 * 175.50601 * 16 15 14 19 19 H 1.08998 * 109.63384 * 300.39864 * 18 16 15 20 20 C 1.53315 * 109.63286 * 179.97438 * 18 16 15 21 21 C 1.52814 * 108.51735 * 170.51994 * 20 18 16 22 22 C 1.50442 * 110.45193 * 51.02829 * 21 20 18 23 23 N 1.32886 * 118.53833 * 162.33068 * 22 21 20 24 24 C 1.31599 * 121.06547 * 179.77824 * 23 22 21 25 25 N 1.31812 * 121.67407 * 359.96055 * 24 23 22 26 26 C 1.32197 * 120.64041 * 0.12503 * 25 24 23 27 27 C 1.37776 * 122.58015 * 342.28270 * 22 21 20 28 28 C 1.50340 * 122.79891 * 0.65038 * 27 22 21 29 29 C 1.38727 * 120.03514 * 354.35374 * 10 9 7 30 30 H 0.96996 * 120.00179 * 0.02562 * 1 2 3 31 31 H 1.08003 * 119.96632 * 0.02614 * 11 10 9 32 32 H 1.08000 * 119.92940 * 179.97438 * 12 11 10 33 33 H 1.07994 * 119.96878 * 179.97438 * 13 12 11 34 34 H 0.96999 * 119.99683 * 215.11741 * 15 14 13 35 35 H 1.09005 * 109.62913 * 290.22516 * 20 18 16 36 36 H 1.08995 * 109.62985 * 50.61268 * 20 18 16 37 37 H 1.08992 * 109.30619 * 171.33251 * 21 20 18 38 38 H 1.09005 * 109.30245 * 290.73215 * 21 20 18 39 39 H 1.08005 * 119.16896 * 179.97438 * 24 23 22 40 40 H 1.07996 * 120.36819 * 179.97438 * 26 25 24 41 41 H 1.09010 * 109.30643 * 222.11705 * 28 27 22 42 42 H 1.08995 * 109.30792 * 102.71477 * 28 27 22 43 43 H 1.08001 * 120.07355 * 0.02562 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1034 1.6964 -1.2125 5 1 1.2845 2.7464 -0.0006 6 1 3.1033 1.6964 1.2126 7 6 2.0089 -1.2008 0.0005 8 1 3.0888 -1.2007 0.0010 9 8 1.3347 -2.3684 0.0005 10 6 2.0701 -3.5046 0.1070 11 6 1.4355 -4.7350 0.2259 12 6 2.1829 -5.8915 0.3347 13 6 3.5635 -5.8290 0.3253 14 6 4.2038 -4.6018 0.2067 15 7 5.6017 -4.5392 0.1977 16 6 6.3165 -5.5222 -0.3844 17 8 5.7533 -6.5005 -0.8282 18 6 7.8158 -5.4061 -0.4839 19 1 8.0771 -4.5136 -1.0525 20 6 8.3834 -6.6472 -1.1825 21 6 9.8615 -6.4017 -1.4828 22 6 10.5794 -5.9380 -0.2447 23 7 11.9056 -6.0160 -0.2131 24 6 12.5842 -5.6204 0.8428 25 7 11.9826 -5.1317 1.9089 26 6 10.6655 -5.0257 1.9501 27 6 9.9160 -5.4364 0.8537 28 6 8.4184 -5.3212 0.9180 29 6 3.4557 -3.4389 0.0914 30 1 -0.4850 0.8400 -0.0004 31 1 0.3568 -4.7872 0.2331 32 1 1.6874 -6.8466 0.4274 33 1 4.1451 -6.7349 0.4110 34 1 6.0561 -3.7882 0.6104 35 1 8.2815 -7.5138 -0.5293 36 1 7.8423 -6.8237 -2.1121 37 1 10.3156 -7.3268 -1.8376 38 1 9.9501 -5.6399 -2.2574 39 1 13.6614 -5.6979 0.8356 40 1 10.1772 -4.6250 2.8260 41 1 8.1494 -4.3658 1.3687 42 1 8.0207 -6.1301 1.5309 43 1 3.9512 -2.4841 -0.0049 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843530348.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:28 Heat of formation + Delta-G solvation = 5.100012 kcal Electronic energy + Delta-G solvation = -27821.954200 eV Core-core repulsion = 23832.574487 eV Total energy + Delta-G solvation = -3989.379713 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.78651 -40.41464 -38.85000 -37.25410 -36.29305 -34.56892 -34.23592 -32.28902 -31.84008 -30.93682 -29.30461 -28.50913 -25.79371 -25.33173 -24.67266 -23.42973 -22.46061 -21.85787 -20.79537 -19.81654 -18.34852 -17.98130 -17.65228 -17.34909 -16.88045 -15.91439 -15.56754 -15.40027 -15.09179 -14.78004 -14.46125 -14.30798 -14.28522 -14.15645 -14.03431 -13.74437 -13.61135 -13.33669 -13.02223 -12.64065 -12.45313 -12.15255 -11.77592 -11.62132 -11.58356 -11.34623 -11.24245 -11.11877 -11.02690 -10.83835 -10.76593 -10.50734 -9.92590 -9.63329 -9.61187 -9.56657 -9.43267 -8.84852 -7.80400 -7.21746 -6.48719 -4.08890 0.49840 0.65494 1.89167 2.32631 2.70179 3.08074 3.08764 3.11565 3.12726 3.34858 3.60162 3.81455 3.91943 4.01436 4.08998 4.19413 4.37741 4.51975 4.60827 4.81669 4.86300 4.97251 5.01094 5.06252 5.11348 5.16955 5.24136 5.35386 5.44019 5.60438 5.67573 5.72785 5.85664 5.95019 6.01810 6.03943 6.18456 6.23080 6.58668 6.59377 6.90386 6.93424 7.06791 7.26427 7.37556 7.60778 7.70023 7.75587 7.94944 8.20041 8.96310 9.66372 10.69151 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013290 B = 0.002506 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.326136 B =11172.609416 C =12641.909313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.040 3.960 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.394 4.394 8 H 0.090 0.910 9 O -0.176 6.176 10 C 0.167 3.833 11 C -0.198 4.198 12 C -0.065 4.065 13 C -0.205 4.205 14 C 0.175 3.825 15 N -0.667 5.667 16 C 0.517 3.483 17 O -0.515 6.515 18 C -0.108 4.108 19 H 0.105 0.895 20 C -0.099 4.099 21 C -0.074 4.074 22 C 0.182 3.818 23 N -0.521 5.521 24 C 0.289 3.711 25 N -0.523 5.523 26 C 0.153 3.847 27 C -0.178 4.178 28 C -0.066 4.066 29 C -0.256 4.256 30 H 0.271 0.729 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.123 0.877 34 H 0.406 0.594 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.196 0.804 40 H 0.170 0.830 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.783 -9.774 1.604 23.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.164 4.164 3 Si 0.765 3.235 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.470 4.470 8 H 0.107 0.893 9 O -0.079 6.079 10 C 0.112 3.888 11 C -0.218 4.218 12 C -0.084 4.084 13 C -0.225 4.225 14 C 0.083 3.917 15 N -0.312 5.312 16 C 0.303 3.697 17 O -0.390 6.390 18 C -0.129 4.129 19 H 0.123 0.877 20 C -0.138 4.138 21 C -0.112 4.112 22 C 0.038 3.962 23 N -0.235 5.235 24 C 0.001 3.999 25 N -0.236 5.236 26 C -0.015 4.015 27 C -0.182 4.182 28 C -0.104 4.104 29 C -0.277 4.277 30 H 0.081 0.919 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.141 0.859 34 H 0.241 0.759 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.212 0.788 40 H 0.187 0.813 41 H 0.107 0.893 42 H 0.110 0.890 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 20.997 -10.330 1.221 23.432 hybrid contribution -0.014 1.476 0.282 1.503 sum 20.983 -8.854 1.503 22.825 Atomic orbital electron populations 1.70023 1.05937 1.27808 1.45865 1.25276 0.95832 0.98782 0.96547 0.85804 0.78744 0.79909 0.79084 1.19561 1.20241 1.19532 1.21216 0.91620 0.80869 1.53280 0.89300 1.84010 1.33957 1.11332 1.78585 1.19076 0.89430 0.88189 0.92064 1.20282 0.99780 0.90291 1.11399 1.20566 0.93176 0.96861 0.97827 1.20670 0.94332 0.96399 1.11144 1.17423 0.80827 0.94228 0.99259 1.43493 1.05641 1.25167 1.56853 1.20471 0.88974 0.82776 0.77462 1.90721 1.71797 1.30081 1.46387 1.21393 0.91565 1.02020 0.97963 0.87662 1.21438 0.93270 0.96573 1.02489 1.20486 0.94272 1.03151 0.93256 1.21403 0.89607 0.90398 0.94775 1.68409 1.08219 1.17875 1.29030 1.24921 1.01197 0.89848 0.83910 1.68435 1.11191 1.15597 1.28370 1.23324 0.89441 0.91695 0.96999 1.21077 0.98117 1.02657 0.96374 1.20320 0.89465 1.04134 0.96511 1.20821 0.93970 0.97605 1.15334 0.91925 0.86382 0.86618 0.85870 0.75906 0.90516 0.89030 0.88562 0.88805 0.78797 0.81298 0.89254 0.89026 0.85284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.78 13.67 55.48 0.76 -24.03 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 19.85 29.55 -169.99 -5.02 14.83 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 7 C -0.39 -10.65 9.49 30.89 0.29 -10.35 16 8 H 0.09 2.19 5.20 -52.49 -0.27 1.91 16 9 O -0.18 -4.89 9.76 0.03 0.00 -4.89 16 10 C 0.17 3.93 6.64 -39.14 -0.26 3.67 16 11 C -0.20 -4.14 9.99 -39.36 -0.39 -4.53 16 12 C -0.07 -1.19 10.03 -39.64 -0.40 -1.59 16 13 C -0.20 -3.74 8.69 -39.34 -0.34 -4.08 16 14 C 0.18 3.14 6.29 -83.71 -0.53 2.62 16 15 N -0.67 -8.87 5.27 -9.87 -0.05 -8.92 16 16 C 0.52 6.49 6.97 -10.99 -0.08 6.41 16 17 O -0.52 -8.34 13.29 5.55 0.07 -8.27 16 18 C -0.11 -0.90 2.56 -91.69 -0.23 -1.13 16 19 H 0.11 0.76 8.10 -51.93 -0.42 0.34 16 20 C -0.10 -0.81 4.70 -26.66 -0.13 -0.93 16 21 C -0.07 -0.53 5.96 -28.10 -0.17 -0.70 16 22 C 0.18 1.60 6.62 -82.43 -0.55 1.05 16 23 N -0.52 -5.02 10.32 -11.00 -0.11 -5.13 16 24 C 0.29 2.51 12.29 -92.31 -1.13 1.37 16 25 N -0.52 -4.87 10.44 -14.54 -0.15 -5.02 16 26 C 0.15 1.20 10.94 -17.11 -0.19 1.01 16 27 C -0.18 -1.40 5.73 -104.68 -0.60 -2.00 16 28 C -0.07 -0.45 4.87 -28.15 -0.14 -0.58 16 29 C -0.26 -5.29 9.08 -39.21 -0.36 -5.65 16 30 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.12 2.37 8.06 -52.48 -0.42 1.95 16 32 H 0.12 1.76 8.06 -52.49 -0.42 1.33 16 33 H 0.12 2.19 6.23 -52.49 -0.33 1.86 16 34 H 0.41 4.10 8.38 -40.82 -0.34 3.76 16 35 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 36 H 0.09 0.81 7.81 -51.93 -0.41 0.41 16 37 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.20 1.08 8.06 -52.48 -0.42 0.66 16 40 H 0.17 0.87 8.06 -52.49 -0.42 0.45 16 41 H 0.09 0.46 7.79 -51.92 -0.40 0.05 16 42 H 0.09 0.64 8.11 -51.93 -0.42 0.22 16 43 H 0.13 2.60 5.64 -52.49 -0.30 2.31 16 LS Contribution 362.16 15.07 5.46 5.46 Total: -1.00 -33.94 362.16 -9.32 -43.26 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -4.98 Total: 7.14 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: -5.29 Total: -14.43 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: 0.44 Total: -43.10 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.07 Total: -13.16 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.94 -9.32 -43.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843530348.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.363 kcal (2) G-P(sol) polarization free energy of solvation -33.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds