Wall clock time and date at job start Sat Apr 11 2020 05:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38310 * 119.92392 * 2 1 4 4 C 1.38083 * 120.07338 * 179.97438 * 3 2 1 5 5 C 1.38928 * 119.92659 * 0.02562 * 4 3 2 6 6 N 1.39676 * 120.07832 * 179.97438 * 5 4 3 7 7 C 1.38896 * 119.85090 * 359.69745 * 5 4 3 8 8 C 1.38122 * 119.91955 * 0.57164 * 7 5 4 9 9 S 1.76204 * 119.95851 * 179.72447 * 8 7 5 10 10 O 1.42104 * 106.39870 * 132.49306 * 9 8 7 11 11 O 1.42094 * 106.40407 * 359.57323 * 9 8 7 12 12 N 1.65603 * 107.22121 * 246.03100 * 9 8 7 13 13 C 1.46498 * 119.99740 * 64.24811 * 12 9 8 14 14 C 1.53041 * 109.46190 * 215.87640 * 13 12 9 15 15 C 1.53197 * 109.31035 * 178.61627 * 14 13 12 16 16 N 1.46925 * 108.89050 * 54.56721 * 15 14 13 17 17 C 1.36938 * 120.62774 * 126.46250 * 16 15 14 18 18 H 1.08000 * 119.99877 * 327.81689 * 17 16 15 19 19 C 1.38818 * 120.00077 * 147.82613 * 17 16 15 20 20 N 1.31623 * 119.99687 * 347.51871 * 19 17 16 21 21 Si 1.86798 * 120.00136 * 167.51726 * 19 17 16 22 22 H 1.48503 * 109.47133 * 59.99941 * 21 19 17 23 23 H 1.48500 * 109.47174 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47038 * 300.00008 * 21 19 17 25 25 C 1.46955 * 118.71732 * 306.63664 * 16 15 14 26 26 C 1.53042 * 109.45814 * 95.81086 * 13 12 9 27 27 H 1.08999 * 109.46932 * 263.95577 * 1 2 3 28 28 H 1.08998 * 109.47560 * 23.95609 * 1 2 3 29 29 H 1.09007 * 109.47162 * 143.95986 * 1 2 3 30 30 H 1.07995 * 119.96229 * 0.02669 * 3 2 1 31 31 H 1.08001 * 120.03644 * 180.02562 * 4 3 2 32 32 H 0.97000 * 119.99438 * 359.97438 * 6 5 4 33 33 H 0.96996 * 120.00777 * 179.97438 * 6 5 4 34 34 H 1.08002 * 120.03658 * 180.29658 * 7 5 4 35 35 H 0.96996 * 119.99715 * 244.25650 * 12 9 8 36 36 H 1.09000 * 109.46263 * 335.85758 * 13 12 9 37 37 H 1.08997 * 109.49384 * 58.66684 * 14 13 12 38 38 H 1.08997 * 109.49746 * 298.56856 * 14 13 12 39 39 H 1.08995 * 109.58080 * 174.42046 * 15 14 13 40 40 H 1.08995 * 109.58771 * 294.70841 * 15 14 13 41 41 H 0.97002 * 119.99385 * 180.02562 * 20 19 17 42 42 H 1.09002 * 109.46696 * 293.57737 * 25 16 15 43 43 H 1.09002 * 109.71563 * 173.29439 * 25 16 15 44 44 H 1.09002 * 109.49708 * 301.33944 * 26 13 12 45 45 H 1.08995 * 109.50021 * 61.39755 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1987 0.0000 4 6 3.5777 1.2023 0.0005 5 6 4.2740 0.0001 0.0005 6 7 5.6707 0.0000 0.0005 7 6 3.5780 -1.2019 0.0064 8 6 2.1968 -1.1982 0.0002 9 16 1.3128 -2.7225 0.0002 10 8 0.3105 -2.6050 1.0006 11 8 2.2907 -3.7535 -0.0029 12 7 0.5174 -2.8281 -1.4485 13 6 1.2785 -2.9114 -2.6975 14 6 0.5398 -2.1445 -3.7968 15 6 1.3555 -2.2048 -5.0922 16 7 1.6288 -3.6113 -5.4172 17 6 1.3060 -4.1185 -6.6476 18 1 0.4466 -3.7383 -7.1798 19 6 2.0833 -5.1214 -7.2106 20 7 3.2565 -5.4147 -6.6909 21 14 1.4644 -6.0545 -8.7058 22 1 1.2397 -5.1040 -9.8244 23 1 2.4737 -7.0655 -9.1111 24 1 0.1879 -6.7354 -8.3708 25 6 2.2516 -4.4641 -4.3952 26 6 1.4260 -4.3785 -3.1076 27 1 -0.3633 -0.1082 1.0220 28 1 -0.3634 0.9391 -0.4173 29 1 -0.3634 -0.8310 -0.6047 30 1 1.6551 2.1329 0.0004 31 1 4.1159 2.1387 0.0010 32 1 6.1557 0.8401 0.0002 33 1 6.1558 -0.8399 0.0009 34 1 4.1162 -2.1382 0.0112 35 1 -0.4523 -2.8345 -1.4699 36 1 2.2663 -2.4746 -2.5508 37 1 0.4145 -1.1050 -3.4938 38 1 -0.4383 -2.5965 -3.9614 39 1 0.7888 -1.7460 -5.9023 40 1 2.2964 -1.6716 -4.9566 41 1 3.7998 -6.1153 -7.0847 42 1 3.2668 -4.1172 -4.2020 43 1 2.2785 -5.4964 -4.7441 44 1 1.9313 -4.9290 -2.3141 45 1 0.4396 -4.8096 -3.2781 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851760454.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:52 Heat of formation + Delta-G solvation = -55.737506 kcal Electronic energy + Delta-G solvation = -28462.719716 eV Core-core repulsion = 24606.145842 eV Total energy + Delta-G solvation = -3856.573874 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.48735 -39.54350 -38.35545 -36.96011 -36.32182 -35.94301 -33.70050 -32.21611 -31.79915 -31.57430 -30.77410 -26.82941 -26.67616 -24.45650 -23.79197 -23.58181 -22.54284 -21.14569 -20.40957 -18.99004 -18.84181 -18.27213 -17.97521 -17.24135 -16.70611 -16.62271 -16.16592 -15.93940 -15.46109 -15.28338 -15.18870 -14.92389 -14.73233 -14.58758 -14.53868 -14.32707 -13.63333 -13.48231 -13.30092 -13.25737 -13.20050 -13.01125 -12.86444 -12.73894 -12.66280 -12.56251 -12.51273 -12.17423 -12.03835 -11.86982 -11.74255 -11.49924 -11.48765 -11.19717 -10.57547 -10.29858 -10.23996 -8.59948 -8.46389 -7.84319 -5.35129 -0.63044 -0.11638 0.50476 1.49141 1.51502 1.57906 1.96425 2.53107 2.53508 2.79616 2.95235 3.32452 3.45450 3.71269 3.83088 3.84438 3.97057 4.09017 4.10261 4.23695 4.32494 4.39639 4.55173 4.59374 4.68945 4.74241 4.81157 4.86569 4.87043 5.03805 5.04795 5.16931 5.19450 5.22612 5.26182 5.32427 5.41966 5.46874 5.51788 5.68210 5.75663 5.81472 6.12708 6.44686 6.50352 6.94851 7.18637 7.88276 8.42234 9.22141 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015614 B = 0.003403 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.834685 B = 8227.207861 C = 8686.076582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.050 4.050 3 C -0.093 4.093 4 C -0.140 4.140 5 C 0.186 3.814 6 N -0.870 5.870 7 C -0.127 4.127 8 C -0.637 4.637 9 S 2.703 3.297 10 O -0.979 6.979 11 O -0.994 6.994 12 N -1.099 6.099 13 C 0.173 3.827 14 C -0.123 4.123 15 C 0.141 3.859 16 N -0.609 5.609 17 C -0.265 4.265 18 H 0.069 0.931 19 C -0.048 4.048 20 N -0.936 5.936 21 Si 0.967 3.033 22 H -0.273 1.273 23 H -0.297 1.297 24 H -0.278 1.278 25 C 0.182 3.818 26 C -0.148 4.148 27 H 0.086 0.914 28 H 0.104 0.896 29 H 0.065 0.935 30 H 0.162 0.838 31 H 0.157 0.843 32 H 0.411 0.589 33 H 0.405 0.595 34 H 0.130 0.870 35 H 0.427 0.573 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.015 0.985 41 H 0.249 0.751 42 H -0.003 1.003 43 H 0.050 0.950 44 H 0.060 0.940 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.031 16.450 15.294 22.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.053 4.053 3 C -0.112 4.112 4 C -0.163 4.163 5 C 0.079 3.921 6 N -0.410 5.410 7 C -0.151 4.151 8 C -0.727 4.727 9 S 2.796 3.204 10 O -0.969 6.969 11 O -0.984 6.984 12 N -0.860 5.860 13 C 0.067 3.933 14 C -0.163 4.163 15 C 0.015 3.985 16 N -0.332 5.332 17 C -0.395 4.395 18 H 0.086 0.914 19 C -0.243 4.243 20 N -0.582 5.582 21 Si 0.795 3.205 22 H -0.199 1.199 23 H -0.223 1.223 24 H -0.204 1.204 25 C 0.056 3.944 26 C -0.189 4.189 27 H 0.104 0.896 28 H 0.123 0.877 29 H 0.083 0.917 30 H 0.180 0.820 31 H 0.175 0.825 32 H 0.242 0.758 33 H 0.234 0.766 34 H 0.148 0.852 35 H 0.264 0.736 36 H 0.092 0.908 37 H 0.113 0.887 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.033 0.967 41 H 0.058 0.942 42 H 0.015 0.985 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.775 15.714 15.920 22.439 hybrid contribution 0.615 -0.511 -1.137 1.390 sum -1.160 15.203 14.783 21.237 Atomic orbital electron populations 1.21237 0.89494 1.05040 1.04019 1.19584 0.96610 0.91672 0.97475 1.21303 0.93788 0.98146 0.97949 1.21270 0.94917 0.96986 1.03098 1.17944 0.85567 0.93575 0.94978 1.42442 1.01963 1.12136 1.84486 1.20424 0.92513 0.98313 1.03864 1.30231 1.05425 1.19226 1.17862 1.01306 0.72901 0.73913 0.72266 1.93555 1.58913 1.87667 1.56796 1.93534 1.62723 1.55595 1.86520 1.55382 1.18733 1.90740 1.21140 1.20525 0.94190 0.95501 0.83133 1.22197 0.99407 1.00697 0.94004 1.21067 0.96512 0.85238 0.95709 1.44264 1.72077 1.05798 1.11108 1.19478 1.06525 1.18218 0.95263 0.91375 1.25930 0.95062 1.02514 1.00824 1.70156 1.11094 1.33212 1.43732 0.85353 0.77133 0.78200 0.79784 1.19897 1.22295 1.20383 1.20476 0.91934 0.95670 0.86364 1.22559 1.01220 0.96918 0.98177 0.89559 0.87733 0.91652 0.82007 0.82522 0.75839 0.76620 0.85248 0.73574 0.90827 0.88746 0.90947 0.91818 0.96711 0.94179 0.98499 0.93110 0.92153 0.91857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 8.56 71.23 0.61 -1.85 16 2 C -0.05 -1.06 5.88 -19.84 -0.12 -1.17 16 3 C -0.09 -1.55 9.67 22.25 0.22 -1.33 16 4 C -0.14 -2.31 9.90 22.40 0.22 -2.09 16 5 C 0.19 3.80 6.75 38.21 0.26 4.06 16 6 N -0.87 -12.67 9.09 -51.37 -0.47 -13.14 16 7 C -0.13 -3.28 9.40 22.40 0.21 -3.07 16 8 C -0.64 -16.59 5.69 22.25 0.13 -16.47 16 9 S 2.70 78.65 4.86 -56.49 -0.27 78.38 16 10 O -0.98 -30.33 16.32 -128.00 -2.09 -32.42 16 11 O -0.99 -35.97 16.31 -128.00 -2.09 -38.05 16 12 N -1.10 -28.60 4.35 -169.27 -0.74 -29.34 16 13 C 0.17 5.51 2.62 45.02 0.12 5.62 16 14 C -0.12 -3.64 5.62 30.67 0.17 -3.47 16 15 C 0.14 5.49 6.51 86.36 0.56 6.05 16 16 N -0.61 -30.08 2.98 -699.02 -2.09 -32.17 16 17 C -0.26 -14.34 9.56 84.03 0.80 -13.54 16 18 H 0.07 3.55 7.86 -2.91 -0.02 3.52 16 19 C -0.05 -2.66 5.00 84.86 0.42 -2.23 16 20 N -0.94 -55.81 11.24 21.65 0.24 -55.57 16 21 Si 0.97 44.68 29.57 68.60 2.03 46.71 16 22 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 23 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 24 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 25 C 0.18 8.98 5.25 86.36 0.45 9.44 16 26 C -0.15 -5.81 5.69 30.67 0.17 -5.64 16 27 H 0.09 1.56 7.96 -2.39 -0.02 1.54 16 28 H 0.10 1.19 8.04 -2.39 -0.02 1.17 16 29 H 0.06 1.14 5.55 -2.38 -0.01 1.13 16 30 H 0.16 1.59 8.06 -2.91 -0.02 1.56 16 31 H 0.16 1.55 8.06 -2.91 -0.02 1.52 16 32 H 0.41 3.73 8.84 -92.71 -0.82 2.91 16 33 H 0.40 5.48 8.84 -92.71 -0.82 4.66 16 34 H 0.13 3.50 7.33 -2.91 -0.02 3.48 16 35 H 0.43 8.84 8.52 -96.75 -0.82 8.02 16 36 H 0.07 2.42 7.81 -2.39 -0.02 2.40 16 37 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.07 2.10 8.14 -2.39 -0.02 2.09 16 39 H 0.06 2.38 7.93 -2.39 -0.02 2.36 16 40 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 42 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 43 H 0.05 2.84 6.26 -2.39 -0.01 2.83 16 44 H 0.06 2.40 7.71 -2.39 -0.02 2.38 16 45 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -74.72 369.92 -2.66 -77.38 By element: Atomic # 1 Polarization: 25.32 SS G_CDS: -1.42 Total: 23.90 kcal Atomic # 6 Polarization: -29.91 SS G_CDS: 4.23 Total: -25.68 kcal Atomic # 7 Polarization: -127.17 SS G_CDS: -3.05 Total: -130.21 kcal Atomic # 8 Polarization: -66.30 SS G_CDS: -4.18 Total: -70.47 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 16 Polarization: 78.65 SS G_CDS: -0.27 Total: 78.38 kcal Total: -74.72 -2.66 -77.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851760454.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.640 kcal (2) G-P(sol) polarization free energy of solvation -74.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds