Wall clock time and date at job start Sat Apr 11 2020 05:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99887 * 2 1 4 4 H 1.48500 * 109.47000 * 240.00120 * 3 2 1 5 5 H 1.48498 * 109.47104 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47040 * 120.00120 * 3 2 1 7 7 C 1.37882 * 120.00483 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99978 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99739 * 359.97438 * 7 2 1 10 10 N 1.46891 * 109.47041 * 185.01390 * 9 7 2 11 11 C 1.46956 * 111.00318 * 295.17611 * 10 9 7 12 12 C 1.53047 * 109.36714 * 183.18917 * 11 10 9 13 13 N 1.46949 * 109.36410 * 301.59780 * 12 11 10 14 14 C 1.39676 * 110.99999 * 183.18717 * 13 12 11 15 15 C 1.38891 * 120.06129 * 300.00461 * 14 13 12 16 16 C 1.38302 * 119.90046 * 179.97438 * 15 14 13 17 17 F 1.35095 * 119.98679 * 179.97438 * 16 15 14 18 18 C 1.38543 * 120.02432 * 0.02562 * 16 15 14 19 19 N 1.48003 * 119.93820 * 179.97438 * 18 16 15 20 20 O 1.21806 * 119.99742 * 179.97438 * 19 18 16 21 21 O 1.21796 * 120.00083 * 359.97438 * 19 18 16 22 22 C 1.38230 * 120.12154 * 359.95726 * 18 16 15 23 23 C 1.38136 * 120.10204 * 0.02562 * 22 18 16 24 24 C 1.50697 * 120.01685 * 179.97438 * 23 22 18 25 25 O 1.42900 * 109.46609 * 0.02562 * 24 23 22 26 26 C 1.46961 * 110.88301 * 59.32371 * 13 12 11 27 27 C 1.46961 * 111.00377 * 58.97819 * 10 9 7 28 28 H 0.96991 * 120.00217 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47203 * 65.00686 * 9 7 2 30 30 H 1.09003 * 109.46810 * 305.01297 * 9 7 2 31 31 H 1.09001 * 109.48286 * 63.21960 * 11 10 9 32 32 H 1.09002 * 109.48839 * 303.16301 * 11 10 9 33 33 H 1.08999 * 109.48615 * 181.63203 * 12 11 10 34 34 H 1.09001 * 109.50953 * 61.57908 * 12 11 10 35 35 H 1.07996 * 120.04680 * 359.97438 * 15 14 13 36 36 H 1.08001 * 119.95172 * 179.74468 * 22 18 16 37 37 H 1.08997 * 109.47433 * 119.99874 * 24 23 22 38 38 H 1.08996 * 109.47397 * 240.00865 * 24 23 22 39 39 H 0.96702 * 113.99779 * 179.97438 * 25 24 23 40 40 H 1.09003 * 109.48746 * 60.64053 * 26 13 12 41 41 H 1.08993 * 109.49027 * 180.70506 * 26 13 12 42 42 H 1.08996 * 109.48494 * 296.78297 * 27 10 9 43 43 H 1.08999 * 109.48623 * 56.81962 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 7 2.2013 -3.6130 0.1199 11 6 3.0784 -3.6867 -1.0569 12 6 3.9971 -4.9041 -0.9297 13 7 4.7858 -4.7923 0.3052 14 6 5.6892 -5.8515 0.4197 15 6 5.2253 -7.1599 0.4632 16 6 6.1228 -8.2061 0.5762 17 9 5.6735 -9.4795 0.6192 18 6 7.4823 -7.9488 0.6462 19 7 8.4410 -9.0698 0.7676 20 8 9.6365 -8.8448 0.8288 21 8 8.0345 -10.2173 0.8063 22 6 7.9450 -6.6469 0.6026 23 6 7.0532 -5.5981 0.4895 24 6 7.5597 -4.1796 0.4428 25 8 8.9860 -4.1801 0.5306 26 6 3.9088 -4.7187 1.4821 27 6 2.9900 -3.5013 1.3548 28 1 -0.4850 0.8399 -0.0004 29 1 0.6931 -2.5966 -0.9318 30 1 0.5592 -2.5192 0.8414 31 1 3.6814 -2.7808 -1.1182 32 1 2.4715 -3.7815 -1.9574 33 1 4.6684 -4.9443 -1.7875 34 1 3.3954 -5.8123 -0.8959 35 1 4.1655 -7.3600 0.4090 36 1 9.0051 -6.4492 0.6616 37 1 7.2540 -3.7153 -0.4948 38 1 7.1441 -3.6176 1.2791 39 1 9.3819 -3.2981 0.5061 40 1 3.3057 -5.6246 1.5434 41 1 4.5156 -4.6239 2.3825 42 1 3.5920 -2.5933 1.3209 43 1 2.3187 -3.4607 2.2126 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000866216263.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:09 Heat of formation + Delta-G solvation = -67.832790 kcal Electronic energy + Delta-G solvation = -29886.144693 eV Core-core repulsion = 25462.833152 eV Total energy + Delta-G solvation = -4423.311541 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -50.50175 -43.34399 -41.75774 -39.64204 -37.78787 -37.61934 -36.80995 -34.55132 -32.85134 -32.35137 -31.90684 -29.64690 -27.75281 -27.19650 -26.02945 -24.51772 -24.40593 -23.27221 -22.72114 -20.83276 -20.31800 -19.94716 -18.93960 -18.84273 -18.66065 -18.33117 -17.43352 -17.11233 -16.94389 -16.63743 -16.32570 -15.88988 -15.83625 -15.63779 -15.60188 -15.52053 -14.94029 -14.73226 -14.26678 -13.74965 -13.66221 -13.54738 -13.29345 -12.94674 -12.85738 -12.80111 -12.73114 -12.51541 -12.40378 -12.34766 -12.21899 -12.18649 -11.85410 -11.80474 -11.44754 -11.32241 -10.70313 -10.58827 -10.01815 -9.84199 -9.03131 -8.14163 -6.33401 -1.51249 -0.44967 -0.02713 0.12716 1.40194 1.40389 1.48424 1.78578 2.28891 2.38727 2.46971 2.94322 3.07007 3.11816 3.25876 3.35053 3.74750 3.92382 3.97369 4.10713 4.11987 4.26465 4.27125 4.35594 4.42623 4.48238 4.57585 4.58212 4.65909 4.78188 4.82880 4.95961 5.03923 5.09785 5.18025 5.22389 5.26751 5.35990 5.64864 5.74960 5.90997 6.04186 6.24456 6.33377 6.50955 6.87441 6.87971 7.38645 8.88200 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019849 B = 0.002778 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.343217 B =10077.684354 C =11153.581995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.012 3.988 3 Si 0.955 3.045 4 H -0.269 1.269 5 H -0.288 1.288 6 H -0.268 1.268 7 C -0.553 4.553 8 H 0.063 0.937 9 C 0.201 3.799 10 N -0.543 5.543 11 C 0.065 3.935 12 C 0.069 3.931 13 N -0.506 5.506 14 C 0.192 3.808 15 C -0.174 4.174 16 C 0.173 3.827 17 F -0.112 7.112 18 C -0.101 4.101 19 N 0.034 4.966 20 O -0.156 6.156 21 O -0.185 6.185 22 C 0.002 3.998 23 C -0.071 4.071 24 C 0.134 3.866 25 O -0.588 6.588 26 C 0.070 3.930 27 C 0.067 3.933 28 H 0.264 0.736 29 H 0.003 0.997 30 H 0.006 0.994 31 H 0.033 0.967 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.058 0.942 35 H 0.174 0.826 36 H 0.178 0.822 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.408 0.592 40 H 0.057 0.943 41 H 0.098 0.902 42 H 0.034 0.966 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.212 -10.423 0.966 18.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.188 4.188 3 Si 0.780 3.220 4 H -0.194 1.194 5 H -0.214 1.214 6 H -0.193 1.193 7 C -0.592 4.592 8 H 0.081 0.919 9 C 0.075 3.925 10 N -0.267 5.267 11 C -0.064 4.064 12 C -0.057 4.057 13 N -0.228 5.228 14 C 0.096 3.904 15 C -0.196 4.196 16 C 0.151 3.849 17 F -0.090 7.090 18 C -0.186 4.186 19 N 0.549 4.451 20 O -0.374 6.374 21 O -0.395 6.395 22 C -0.017 4.017 23 C -0.073 4.073 24 C 0.057 3.943 25 O -0.398 6.398 26 C -0.056 4.056 27 C -0.061 4.061 28 H 0.073 0.927 29 H 0.021 0.979 30 H 0.024 0.976 31 H 0.051 0.949 32 H 0.088 0.912 33 H 0.116 0.884 34 H 0.076 0.924 35 H 0.192 0.808 36 H 0.195 0.805 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.260 0.740 40 H 0.076 0.924 41 H 0.116 0.884 42 H 0.053 0.947 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 14.426 -10.481 0.938 17.856 hybrid contribution -0.001 1.041 -0.028 1.041 sum 14.425 -9.440 0.910 17.263 Atomic orbital electron populations 1.70052 1.07675 1.27880 1.51206 1.25801 0.95490 1.02827 0.94653 0.85660 0.78399 0.78907 0.79040 1.19404 1.21392 1.19293 1.21960 0.93563 0.92666 1.50990 0.91925 1.19364 0.91175 0.86715 0.95289 1.62631 1.17467 1.44132 1.02514 1.21950 0.94020 0.96614 0.93781 1.22331 0.94724 0.97925 0.90698 1.60006 1.19266 1.38958 1.04614 1.18772 0.92246 0.88477 0.90868 1.21916 1.01720 0.91008 1.04938 1.17278 0.89099 0.80571 0.97928 1.91651 1.89275 1.35514 1.92531 1.21368 0.87639 0.88327 1.21272 1.43568 1.01804 1.02267 0.97419 1.94524 0.98886 1.90903 1.53087 1.94600 1.83436 1.06487 1.54941 1.20785 1.03636 0.86728 0.90582 1.19809 0.90639 0.96312 1.00521 1.20644 0.81024 0.89985 1.02695 1.86296 1.19167 1.36867 1.97478 1.22327 0.93389 0.98228 0.91631 1.21916 0.94795 0.96416 0.93021 0.92729 0.97909 0.97561 0.94918 0.91181 0.88383 0.92370 0.80815 0.80497 0.90195 0.90231 0.73993 0.92446 0.88424 0.94726 0.91457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.79 13.29 21.45 0.28 -52.50 16 2 C 0.01 0.62 5.46 84.66 0.46 1.08 16 3 Si 0.95 41.04 29.54 68.60 2.03 43.07 16 4 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 7 C -0.55 -27.98 7.66 25.60 0.20 -27.78 16 8 H 0.06 3.06 5.82 -2.91 -0.02 3.05 16 9 C 0.20 9.65 5.14 85.56 0.44 10.09 16 10 N -0.54 -19.91 4.92 -900.31 -4.43 -24.34 16 11 C 0.07 2.03 5.32 86.31 0.46 2.49 16 12 C 0.07 1.50 5.31 86.31 0.46 1.96 16 13 N -0.51 -10.20 4.05 -694.83 -2.81 -13.01 16 14 C 0.19 3.35 4.70 38.21 0.18 3.53 16 15 C -0.17 -3.01 8.62 22.44 0.19 -2.82 16 16 C 0.17 3.60 7.25 22.36 0.16 3.76 16 17 F -0.11 -2.64 15.47 44.97 0.70 -1.94 16 18 C -0.10 -2.24 6.86 36.45 0.25 -1.99 16 19 N 0.03 0.91 4.45 -46.30 -0.21 0.70 16 20 O -0.16 -4.22 18.44 18.88 0.35 -3.88 16 21 O -0.19 -5.47 17.41 18.89 0.33 -5.14 16 22 C 0.00 0.04 8.88 22.24 0.20 0.23 16 23 C -0.07 -1.19 5.90 -19.73 -0.12 -1.31 16 24 C 0.13 1.90 6.84 71.24 0.49 2.39 16 25 O -0.59 -7.55 12.14 -148.98 -1.81 -9.36 16 26 C 0.07 1.54 5.36 86.31 0.46 2.00 16 27 C 0.07 2.13 5.24 86.31 0.45 2.59 16 28 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 29 H 0.00 0.15 8.12 -2.39 -0.02 0.13 16 30 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.03 1.15 6.78 -2.39 -0.02 1.13 16 32 H 0.07 2.24 8.12 -2.39 -0.02 2.22 16 33 H 0.10 1.78 8.13 -2.39 -0.02 1.76 16 34 H 0.06 1.19 7.24 -2.39 -0.02 1.17 16 35 H 0.17 2.59 7.06 -2.91 -0.02 2.57 16 36 H 0.18 3.24 6.55 -2.91 -0.02 3.22 16 37 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.41 1.81 9.12 -74.06 -0.68 1.14 16 40 H 0.06 1.19 7.44 -2.39 -0.02 1.18 16 41 H 0.10 1.81 8.13 -2.39 -0.02 1.79 16 42 H 0.03 1.24 6.61 -2.39 -0.02 1.22 16 43 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -63.02 359.54 -0.89 -63.91 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: 0.40 Total: 6.28 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: 4.28 Total: -3.79 kcal Atomic # 7 Polarization: -82.00 SS G_CDS: -7.16 Total: -89.16 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -1.13 Total: -18.38 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.70 Total: -1.94 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Total: -63.02 -0.89 -63.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866216263.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.922 kcal (2) G-P(sol) polarization free energy of solvation -63.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds