Wall clock time and date at job start Sat Apr 11 2020 05:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86801 * 120.00235 * 2 1 4 4 H 1.48502 * 109.46694 * 269.99644 * 3 2 1 5 5 H 1.48493 * 109.47073 * 29.99237 * 3 2 1 6 6 H 1.48498 * 109.47452 * 149.99659 * 3 2 1 7 7 C 1.38661 * 119.99965 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99602 * 0.02562 * 7 2 1 9 9 O 1.34829 * 119.99884 * 180.02562 * 7 2 1 10 10 C 1.35750 * 116.99653 * 185.06095 * 9 7 2 11 11 C 1.38900 * 120.06982 * 354.49080 * 10 9 7 12 12 C 1.38080 * 119.92919 * 179.97438 * 11 10 9 13 13 C 1.38322 * 120.06986 * 359.74408 * 12 11 10 14 14 C 1.38278 * 120.13733 * 0.51047 * 13 12 11 15 15 C 1.50701 * 119.96603 * 179.76353 * 14 13 12 16 16 C 1.50696 * 109.47350 * 269.72910 * 15 14 13 17 17 O 1.21265 * 120.00179 * 359.97438 * 16 15 14 18 18 N 1.34779 * 120.00040 * 180.02562 * 16 15 14 19 19 C 1.38936 * 119.99969 * 179.97438 * 18 16 15 20 20 N 1.32424 * 119.20567 * 0.27807 * 19 18 16 21 21 C 1.32257 * 120.74834 * 180.28431 * 20 19 18 22 22 C 1.38634 * 119.18375 * 359.44808 * 21 20 19 23 23 C 1.38585 * 118.53665 * 0.26649 * 22 21 20 24 24 C 1.50708 * 120.40646 * 179.97438 * 23 22 21 25 25 C 1.53003 * 117.49983 * 343.75072 * 24 23 22 26 26 C 1.52999 * 117.49975 * 275.09299 * 24 23 22 27 27 N 1.32285 * 119.18821 * 0.02562 * 23 22 21 28 28 C 1.38122 * 120.06866 * 359.49537 * 14 13 12 29 29 H 0.96998 * 119.99671 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.03601 * 359.97438 * 11 10 9 31 31 H 1.08000 * 119.96643 * 179.97438 * 12 11 10 32 32 H 1.07997 * 119.93181 * 180.27780 * 13 12 11 33 33 H 1.08997 * 109.47140 * 149.71973 * 15 14 13 34 34 H 1.09006 * 109.46792 * 29.72625 * 15 14 13 35 35 H 0.97004 * 119.99878 * 359.97438 * 18 16 15 36 36 H 1.07996 * 120.40587 * 179.71396 * 21 20 19 37 37 H 1.08010 * 120.72978 * 180.29701 * 22 21 20 38 38 H 1.08996 * 115.54788 * 129.42258 * 24 23 22 39 39 H 1.09001 * 117.49351 * 0.02562 * 25 24 23 40 40 H 1.08996 * 117.49494 * 145.01937 * 25 24 23 41 41 H 1.09002 * 117.49610 * 214.98357 * 26 24 23 42 42 H 1.09004 * 117.49780 * 359.96946 * 26 24 23 43 43 H 1.07998 * 120.03467 * 180.23740 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0462 -1.4001 5 1 1.4470 2.6527 0.6998 6 1 3.5471 1.4402 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 1.4688 -2.1361 0.0005 9 8 3.3571 -1.2008 0.0011 10 6 3.9734 -2.4057 -0.1051 11 6 3.2232 -3.5746 -0.0928 12 6 3.8530 -4.7986 -0.2016 13 6 5.2290 -4.8612 -0.3280 14 6 5.9791 -3.6995 -0.3353 15 6 7.4785 -3.7725 -0.4679 16 6 8.1003 -3.8598 0.9021 17 8 7.3955 -3.8620 1.8889 18 7 9.4399 -3.9343 1.0306 19 6 10.0132 -4.0142 2.2936 20 7 9.2283 -4.0216 3.3602 21 6 9.7417 -4.0911 4.5771 22 6 11.1178 -4.1683 4.7268 23 6 11.9088 -4.1641 3.5889 24 6 13.4094 -4.2457 3.7028 25 6 14.0313 -3.9510 5.0693 26 6 14.1728 -2.9393 3.9294 27 7 11.3307 -4.0865 2.4016 28 6 5.3550 -2.4721 -0.2268 29 1 -0.4849 0.8401 -0.0004 30 1 2.1484 -3.5262 0.0017 31 1 3.2703 -5.7079 -0.1916 32 1 5.7189 -5.8195 -0.4174 33 1 7.8422 -2.8794 -0.9759 34 1 7.7495 -4.6555 -1.0468 35 1 10.0037 -3.9322 0.2413 36 1 9.0967 -4.0920 5.4432 37 1 11.5635 -4.2308 5.7087 38 1 13.8868 -5.0072 3.0862 39 1 13.3550 -3.6985 5.8860 40 1 14.9181 -4.5184 5.3515 41 1 15.1527 -2.8415 3.4621 42 1 13.5898 -2.0207 3.9956 43 1 5.9411 -1.5650 -0.2364 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875887021.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:31 Heat of formation + Delta-G solvation = 62.383218 kcal Electronic energy + Delta-G solvation = -27234.638888 eV Core-core repulsion = 23247.743162 eV Total energy + Delta-G solvation = -3986.895727 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.58345 -39.88559 -38.95054 -37.72455 -36.64425 -35.02206 -33.66657 -32.46678 -32.22417 -30.88823 -29.42001 -27.37314 -25.78653 -25.17052 -24.26750 -22.77498 -22.45409 -21.70767 -20.79017 -20.12777 -18.58439 -17.73623 -17.66131 -17.02949 -16.57700 -16.35408 -16.04375 -15.58921 -15.20015 -14.95476 -14.77682 -14.35773 -14.29657 -13.98554 -13.80618 -13.65215 -13.46113 -12.62484 -12.59578 -12.47956 -12.16400 -12.07011 -11.85225 -11.62607 -11.33726 -11.24657 -11.10183 -11.00701 -10.84081 -10.78350 -10.70065 -10.38404 -10.13293 -9.93684 -9.35983 -9.16620 -8.88824 -8.83726 -8.14168 -7.33309 -6.37511 -4.04046 0.69695 0.84819 1.93081 2.29616 2.47159 2.58341 3.21139 3.24886 3.27871 3.44016 3.59996 3.73726 4.06116 4.24063 4.27436 4.35279 4.48584 4.56531 4.65113 4.70267 4.79323 4.91662 4.98291 5.08618 5.14689 5.16188 5.25212 5.31449 5.44324 5.52699 5.57868 5.61867 5.69387 5.79501 5.85934 6.14171 6.27182 6.29286 6.53684 6.78303 6.83424 6.90924 7.11275 7.22659 7.34354 7.62934 7.84275 7.94867 8.07947 8.14694 8.98018 9.61010 10.70272 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016773 B = 0.002171 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.922259 B =12892.364053 C =13745.769954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.062 3.938 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.388 4.388 8 H 0.106 0.894 9 O -0.219 6.219 10 C 0.160 3.840 11 C -0.215 4.215 12 C -0.076 4.076 13 C -0.186 4.186 14 C -0.039 4.039 15 C -0.087 4.087 16 C 0.505 3.495 17 O -0.442 6.442 18 N -0.646 5.646 19 C 0.545 3.455 20 N -0.504 5.504 21 C 0.182 3.818 22 C -0.266 4.266 23 C 0.235 3.765 24 C -0.113 4.113 25 C -0.168 4.168 26 C -0.158 4.158 27 N -0.549 5.549 28 C -0.173 4.173 29 H 0.279 0.721 30 H 0.133 0.867 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.421 0.579 36 H 0.172 0.828 37 H 0.147 0.853 38 H 0.127 0.873 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.096 0.904 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.222 -9.618 5.671 30.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.464 4.464 8 H 0.124 0.876 9 O -0.124 6.124 10 C 0.108 3.892 11 C -0.234 4.234 12 C -0.094 4.094 13 C -0.205 4.205 14 C -0.040 4.040 15 C -0.127 4.127 16 C 0.289 3.711 17 O -0.306 6.306 18 N -0.297 5.297 19 C 0.189 3.811 20 N -0.224 5.224 21 C 0.014 3.986 22 C -0.290 4.290 23 C 0.088 3.912 24 C -0.132 4.132 25 C -0.206 4.206 26 C -0.195 4.195 27 N -0.270 5.270 28 C -0.192 4.192 29 H 0.089 0.911 30 H 0.151 0.849 31 H 0.129 0.871 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.259 0.741 36 H 0.189 0.811 37 H 0.165 0.835 38 H 0.145 0.855 39 H 0.120 0.880 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.115 0.885 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 26.992 -9.184 5.404 29.019 hybrid contribution 0.788 0.562 0.420 1.056 sum 27.780 -8.621 5.825 29.664 Atomic orbital electron populations 1.69647 1.05526 1.28392 1.48333 1.24457 0.95026 0.98776 0.95782 0.86190 0.80395 0.81503 0.78879 1.19919 1.20817 1.18376 1.20762 0.76903 0.96610 1.52079 0.87640 1.83570 1.22585 1.25626 1.80624 1.19002 0.91499 0.85575 0.93109 1.21310 1.01165 0.91946 1.08968 1.20738 0.94119 0.96758 0.97795 1.20423 0.93964 0.96395 1.09716 1.18593 0.91644 0.93145 1.00610 1.20573 0.93978 1.05131 0.92997 1.21166 0.80231 0.76746 0.92912 1.90883 1.59593 1.40979 1.39169 1.43512 1.08610 1.72377 1.05193 1.19513 0.84631 0.89998 0.86933 1.68559 1.38742 1.16798 0.98269 1.23273 0.92777 0.87822 0.94704 1.22572 0.95916 1.09560 1.00967 1.20398 0.94656 0.88988 0.87205 1.20797 0.88447 1.02106 1.01877 1.23132 1.02946 1.02961 0.91516 1.23003 1.01538 0.93071 1.01927 1.67460 1.10500 1.20428 1.28627 1.19941 0.92047 0.96959 1.10274 0.91122 0.84944 0.87112 0.87652 0.87701 0.87733 0.74100 0.81052 0.83506 0.85541 0.87985 0.87698 0.87785 0.88516 0.86773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.86 13.96 55.48 0.77 -25.08 16 2 C 0.06 1.79 5.49 -17.51 -0.10 1.69 16 3 Si 0.90 22.17 28.62 -169.99 -4.86 17.30 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.26 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.39 -11.19 9.95 30.89 0.31 -10.88 16 8 H 0.11 3.10 5.44 -52.49 -0.29 2.81 16 9 O -0.22 -5.95 8.59 0.05 0.00 -5.95 16 10 C 0.16 3.84 6.65 -39.11 -0.26 3.58 16 11 C -0.21 -4.81 9.17 -39.39 -0.36 -5.17 16 12 C -0.08 -1.43 10.04 -39.61 -0.40 -1.83 16 13 C -0.19 -3.22 9.70 -39.54 -0.38 -3.61 16 14 C -0.04 -0.68 4.37 -104.65 -0.46 -1.13 16 15 C -0.09 -1.05 5.83 -29.04 -0.17 -1.22 16 16 C 0.50 7.26 7.78 -10.99 -0.09 7.17 16 17 O -0.44 -8.52 14.23 5.57 0.08 -8.44 16 18 N -0.65 -7.64 5.40 -13.07 -0.07 -7.71 16 19 C 0.54 7.42 8.38 -322.25 -2.70 4.72 16 20 N -0.50 -7.53 7.87 -13.83 -0.11 -7.64 16 21 C 0.18 2.00 11.30 -17.22 -0.19 1.81 16 22 C -0.27 -2.33 9.43 -39.31 -0.37 -2.70 16 23 C 0.23 2.29 6.50 -82.26 -0.53 1.76 16 24 C -0.11 -0.76 6.24 -91.77 -0.57 -1.34 16 25 C -0.17 -0.76 9.83 -26.69 -0.26 -1.02 16 26 C -0.16 -0.87 10.24 -26.70 -0.27 -1.14 16 27 N -0.55 -6.52 10.39 -10.06 -0.10 -6.63 16 28 C -0.17 -3.55 9.65 -39.39 -0.38 -3.93 16 29 H 0.28 7.56 8.31 -40.82 -0.34 7.22 16 30 H 0.13 3.09 5.64 -52.49 -0.30 2.80 16 31 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 32 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 33 H 0.10 1.02 8.08 -51.93 -0.42 0.60 16 34 H 0.10 0.93 8.08 -51.93 -0.42 0.51 16 35 H 0.42 3.40 8.81 -40.82 -0.36 3.04 16 36 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 37 H 0.15 0.81 6.38 -52.48 -0.33 0.48 16 38 H 0.13 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.10 0.41 6.46 -51.93 -0.34 0.07 16 40 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.11 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 372.93 15.07 5.62 5.62 Total: -1.00 -36.17 372.93 -10.83 -47.01 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -4.97 Total: 4.77 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -7.19 Total: -13.26 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: 0.49 Total: -47.06 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: 0.08 Total: -14.39 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.86 Total: 17.30 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.17 -10.83 -47.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875887021.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.393 kcal (2) G-P(sol) polarization free energy of solvation -36.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds