Wall clock time and date at job start Sat Apr 11 2020 05:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34229 * 116.99681 * 2 1 4 4 O 1.20818 * 120.00467 * 0.27337 * 3 2 1 5 5 C 1.50705 * 119.99430 * 179.97438 * 3 2 1 6 6 H 1.09005 * 109.87330 * 59.56619 * 5 3 2 7 7 C 1.54318 * 109.88289 * 298.54304 * 5 3 2 8 8 C 1.55151 * 102.94311 * 218.39033 * 7 5 3 9 9 H 1.09002 * 111.00412 * 277.42992 * 8 7 5 10 10 F 1.39901 * 111.00770 * 153.61602 * 8 7 5 11 11 C 1.54913 * 101.58124 * 35.50309 * 8 7 5 12 12 N 1.47027 * 109.88049 * 180.73715 * 5 3 2 13 13 C 1.34779 * 125.64620 * 298.33752 * 12 5 3 14 14 O 1.21599 * 120.00311 * 354.38648 * 13 12 5 15 15 C 1.47425 * 120.00006 * 174.38665 * 13 12 5 16 16 C 1.41296 * 126.41285 * 352.93238 * 15 13 12 17 17 N 1.30446 * 108.02371 * 179.97438 * 16 15 13 18 18 N 1.39935 * 108.89840 * 359.97438 * 17 16 15 19 19 C 1.46495 * 125.75647 * 180.02562 * 18 17 16 20 20 C 1.50701 * 109.47200 * 90.02623 * 19 18 17 21 21 H 1.08001 * 119.99646 * 359.97438 * 20 19 18 22 22 C 1.37879 * 120.00034 * 180.02562 * 20 19 18 23 23 N 1.31520 * 119.99754 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00012 * 179.97438 * 22 20 19 25 25 H 1.48510 * 109.46771 * 89.99789 * 24 22 20 26 26 H 1.48496 * 109.47106 * 209.99594 * 24 22 20 27 27 H 1.48501 * 109.47343 * 330.00124 * 24 22 20 28 28 C 1.34268 * 108.49000 * 359.74788 * 18 17 16 29 29 C 1.50697 * 126.29305 * 180.23810 * 28 18 17 30 30 H 1.08999 * 109.47259 * 59.99725 * 1 2 3 31 31 H 1.09002 * 109.47370 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47078 * 300.00511 * 1 2 3 33 33 H 1.09002 * 110.72402 * 336.76016 * 7 5 3 34 34 H 1.09004 * 110.71873 * 99.85106 * 7 5 3 35 35 H 1.09001 * 110.36377 * 81.83186 * 11 8 7 36 36 H 1.09001 * 110.36488 * 204.03935 * 11 8 7 37 37 H 1.08001 * 125.98639 * 0.02562 * 16 15 13 38 38 H 1.09005 * 109.47006 * 210.02103 * 19 18 17 39 39 H 1.08996 * 109.47148 * 330.02515 * 19 18 17 40 40 H 0.96997 * 119.99199 * 180.02562 * 23 22 20 41 41 H 1.08999 * 109.47428 * 270.18870 * 29 28 18 42 42 H 1.09008 * 109.46991 * 30.18879 * 29 28 18 43 43 H 1.08996 * 109.47307 * 150.18288 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0050 5 6 3.5663 1.2748 0.0006 6 1 3.9639 0.7755 -0.8830 7 6 4.1262 0.6101 1.2757 8 6 5.3120 1.5348 1.6577 9 1 6.2045 1.2824 1.0850 10 9 5.5690 1.4792 3.0318 11 6 4.7656 2.9258 1.2500 12 7 3.9933 2.6816 0.0183 13 6 3.7237 3.5963 -0.9342 14 8 3.1639 3.2594 -1.9597 15 6 4.1075 5.0054 -0.7327 16 6 4.6319 5.5708 0.4513 17 7 4.8439 6.8393 0.2334 18 7 4.4713 7.1418 -1.0811 19 6 4.5563 8.4607 -1.7130 20 6 5.9027 8.6161 -2.3720 21 1 6.6231 7.8129 -2.3244 22 6 6.2152 9.7841 -3.0347 23 7 5.3380 10.7624 -3.0921 24 14 7.8843 9.9771 -3.8509 25 1 7.8084 9.4938 -5.2531 26 1 8.2774 11.4090 -3.8414 27 1 8.8939 9.1815 -3.1072 28 6 4.0283 6.0180 -1.6675 29 6 3.5317 5.8873 -3.0842 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 3.3757 0.5988 2.0662 34 1 4.4748 -0.4005 1.0626 35 1 4.1178 3.3228 2.0315 36 1 5.5879 3.6139 1.0540 37 1 4.8245 5.0446 1.3746 38 1 3.7715 8.5553 -2.4635 39 1 4.4307 9.2350 -0.9562 40 1 5.5578 11.5839 -3.5587 41 1 2.4577 6.0709 -3.1112 42 1 4.0408 6.6150 -3.7163 43 1 3.7376 4.8814 -3.4500 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893539677.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:24 Heat of formation + Delta-G solvation = -81.768376 kcal Electronic energy + Delta-G solvation = -30025.290870 eV Core-core repulsion = 25601.375037 eV Total energy + Delta-G solvation = -4423.915834 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.01822 -41.21591 -40.62615 -39.14206 -37.10251 -36.45639 -33.96012 -32.40415 -31.72322 -30.94624 -30.13533 -27.83051 -27.29465 -26.71026 -24.68122 -23.57281 -22.41258 -21.79753 -20.91926 -19.85194 -18.59354 -18.22114 -17.22652 -17.02149 -16.79746 -16.73599 -16.36232 -15.74873 -15.20266 -15.13785 -15.05225 -14.78606 -14.43768 -14.21560 -13.89824 -13.51900 -13.31442 -13.20751 -13.06102 -12.91808 -12.58134 -12.47156 -12.29099 -12.12909 -11.97552 -11.74699 -11.50231 -11.49318 -11.13857 -11.06600 -10.98146 -10.90782 -10.57145 -10.38663 -10.23647 -9.94958 -9.53457 -8.94306 -8.72472 -8.59033 -7.96215 -6.34779 -4.43004 2.01027 2.04705 2.33599 2.75421 2.83308 3.16933 3.23609 3.26251 3.37597 3.70765 3.80922 3.84993 4.08900 4.23028 4.36780 4.57079 4.69972 4.88839 4.95055 4.97982 4.99749 5.06899 5.15708 5.19057 5.27077 5.29009 5.33269 5.43883 5.64090 5.71677 5.81103 6.03068 6.09639 6.17969 6.47339 6.53406 6.76439 6.89189 7.12801 7.41426 7.54439 7.59536 7.75570 7.76526 8.32672 8.44311 8.62651 9.24036 10.73424 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016913 B = 0.002923 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.170615 B = 9576.775458 C =10497.550091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.361 6.361 3 C 0.449 3.551 4 O -0.477 6.477 5 C 0.155 3.845 6 H 0.121 0.879 7 C -0.143 4.143 8 C 0.080 3.920 9 H 0.113 0.887 10 F -0.195 7.195 11 C 0.071 3.929 12 N -0.607 5.607 13 C 0.633 3.367 14 O -0.537 6.537 15 C -0.327 4.327 16 C 0.046 3.954 17 N -0.293 5.293 18 N -0.312 5.312 19 C 0.250 3.750 20 C -0.541 4.541 21 H 0.066 0.934 22 C 0.067 3.933 23 N -0.889 5.889 24 Si 0.908 3.092 25 H -0.276 1.276 26 H -0.282 1.282 27 H -0.271 1.271 28 C 0.169 3.831 29 C -0.096 4.096 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.061 0.939 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.086 0.914 36 H 0.108 0.892 37 H 0.183 0.817 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.269 0.731 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.977 -22.483 7.779 24.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.278 6.278 3 C 0.288 3.712 4 O -0.361 6.361 5 C 0.049 3.951 6 H 0.138 0.862 7 C -0.181 4.181 8 C 0.043 3.957 9 H 0.130 0.870 10 F -0.176 7.176 11 C -0.053 4.053 12 N -0.344 5.344 13 C 0.427 3.573 14 O -0.414 6.414 15 C -0.342 4.342 16 C -0.140 4.140 17 N -0.113 5.113 18 N -0.089 5.089 19 C 0.133 3.867 20 C -0.580 4.580 21 H 0.084 0.916 22 C -0.137 4.137 23 N -0.526 5.526 24 Si 0.735 3.265 25 H -0.202 1.202 26 H -0.208 1.208 27 H -0.196 1.196 28 C 0.032 3.968 29 C -0.154 4.154 30 H 0.082 0.918 31 H 0.119 0.881 32 H 0.080 0.920 33 H 0.113 0.887 34 H 0.128 0.872 35 H 0.104 0.896 36 H 0.126 0.874 37 H 0.200 0.800 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.097 0.903 42 H 0.102 0.898 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.145 -20.760 7.567 22.481 hybrid contribution 0.274 -0.402 -0.534 0.722 sum -3.870 -21.162 7.033 22.633 Atomic orbital electron populations 1.23256 0.76220 1.03536 1.02714 1.86467 1.23509 1.33253 1.84536 1.23988 0.92130 0.81796 0.73299 1.90732 1.66352 1.36199 1.42864 1.20926 0.87527 0.85101 1.01554 0.86188 1.23211 0.98306 1.00371 0.96243 1.22713 0.99120 0.95919 0.77961 0.86965 1.92854 1.95455 1.97113 1.32138 1.23215 0.97072 0.97060 0.87944 1.47877 1.55537 1.08600 1.22363 1.16939 0.76319 0.83297 0.80722 1.90711 1.43041 1.80708 1.26970 1.19454 1.24702 0.93374 0.96689 1.24236 0.99067 0.92380 0.98345 1.77160 1.21802 1.15523 0.96785 1.49402 1.42130 1.09769 1.07613 1.19872 0.99206 0.74272 0.93312 1.21251 0.99454 1.02090 1.35157 0.91617 1.24933 0.97988 0.95031 0.95715 1.69920 1.34961 1.05768 1.41977 0.86317 0.82961 0.77575 0.79643 1.20198 1.20783 1.19608 1.21432 0.93565 0.86145 0.95673 1.20590 1.01246 1.04584 0.88984 0.91776 0.88075 0.91990 0.88653 0.87193 0.89624 0.87398 0.80025 0.92537 0.92419 0.92084 0.90336 0.89767 0.88976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.56 101.05 1.07 1.37 16 2 O -0.36 -3.77 10.53 -39.25 -0.41 -4.18 16 3 C 0.45 5.76 6.82 36.01 0.25 6.00 16 4 O -0.48 -8.07 14.97 -22.63 -0.34 -8.41 16 5 C 0.16 1.61 3.34 -68.10 -0.23 1.38 16 6 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 7 C -0.14 -0.96 6.25 -24.90 -0.16 -1.11 16 8 C 0.08 0.58 4.86 -24.58 -0.12 0.46 16 9 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 10 F -0.20 -1.71 17.24 2.25 0.04 -1.67 16 11 C 0.07 0.70 4.91 -2.53 -0.01 0.69 16 12 N -0.61 -7.93 2.84 -165.58 -0.47 -8.40 16 13 C 0.63 11.05 6.87 -12.52 -0.09 10.96 16 14 O -0.54 -10.60 14.54 -3.01 -0.04 -10.65 16 15 C -0.33 -6.19 6.05 -105.07 -0.64 -6.83 16 16 C 0.05 0.83 10.28 -16.98 -0.17 0.65 16 17 N -0.29 -6.37 12.50 30.86 0.39 -5.98 16 18 N -0.31 -7.14 3.56 -57.78 -0.21 -7.34 16 19 C 0.25 6.26 5.78 -5.20 -0.03 6.23 16 20 C -0.54 -14.49 9.39 -34.44 -0.32 -14.81 16 21 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16 22 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 23 N -0.89 -24.56 13.29 55.43 0.74 -23.82 16 24 Si 0.91 20.66 29.54 -169.99 -5.02 15.64 16 25 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 28 C 0.17 3.52 7.00 -81.60 -0.57 2.95 16 29 C -0.10 -1.77 9.27 36.00 0.33 -1.44 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.51 8.13 -51.93 -0.42 0.08 16 33 H 0.09 0.66 7.84 -51.93 -0.41 0.25 16 34 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.09 0.84 7.72 -51.93 -0.40 0.43 16 36 H 0.11 1.06 5.93 -51.93 -0.31 0.75 16 37 H 0.18 2.46 4.87 -52.49 -0.26 2.20 16 38 H 0.06 1.41 7.64 -51.93 -0.40 1.01 16 39 H 0.06 1.53 8.14 -51.93 -0.42 1.11 16 40 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 41 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 42 H 0.08 1.59 7.71 -51.92 -0.40 1.18 16 43 H 0.09 1.65 6.68 -51.93 -0.35 1.30 16 LS Contribution 366.80 15.07 5.53 5.53 Total: -1.00 -34.10 366.80 -6.03 -40.14 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -5.44 Total: 0.96 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: -0.79 Total: 8.20 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: 0.45 Total: -45.55 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.80 Total: -23.24 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.10 -6.03 -40.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893539677.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.630 kcal (2) G-P(sol) polarization free energy of solvation -34.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds