Wall clock time and date at job start Sat Apr 11 2020 05:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34229 * 116.99681 * 2 1 4 4 O 1.20818 * 120.00467 * 0.27337 * 3 2 1 5 5 C 1.50705 * 119.99430 * 179.97438 * 3 2 1 6 6 H 1.09005 * 109.87330 * 59.56619 * 5 3 2 7 7 C 1.54318 * 109.88289 * 298.54304 * 5 3 2 8 8 C 1.55151 * 102.94311 * 218.39033 * 7 5 3 9 9 H 1.09002 * 111.00412 * 277.42992 * 8 7 5 10 10 F 1.39901 * 111.00770 * 153.61602 * 8 7 5 11 11 C 1.54913 * 101.58124 * 35.50309 * 8 7 5 12 12 N 1.47027 * 109.88049 * 180.73715 * 5 3 2 13 13 C 1.34779 * 125.64620 * 298.33752 * 12 5 3 14 14 O 1.21599 * 120.00311 * 354.38648 * 13 12 5 15 15 C 1.47425 * 120.00006 * 174.38665 * 13 12 5 16 16 C 1.41296 * 126.41285 * 352.93238 * 15 13 12 17 17 N 1.30446 * 108.02371 * 179.97438 * 16 15 13 18 18 N 1.39935 * 108.89840 * 359.97438 * 17 16 15 19 19 C 1.46495 * 125.75647 * 180.02562 * 18 17 16 20 20 C 1.50701 * 109.47200 * 90.02623 * 19 18 17 21 21 H 1.08001 * 119.99646 * 359.97438 * 20 19 18 22 22 C 1.37879 * 120.00034 * 180.02562 * 20 19 18 23 23 N 1.31520 * 119.99754 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00012 * 179.97438 * 22 20 19 25 25 H 1.48510 * 109.46771 * 89.99789 * 24 22 20 26 26 H 1.48496 * 109.47106 * 209.99594 * 24 22 20 27 27 H 1.48501 * 109.47343 * 330.00124 * 24 22 20 28 28 C 1.34268 * 108.49000 * 359.74788 * 18 17 16 29 29 C 1.50697 * 126.29305 * 180.23810 * 28 18 17 30 30 H 1.08999 * 109.47259 * 59.99725 * 1 2 3 31 31 H 1.09002 * 109.47370 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47078 * 300.00511 * 1 2 3 33 33 H 1.09002 * 110.72402 * 336.76016 * 7 5 3 34 34 H 1.09004 * 110.71873 * 99.85106 * 7 5 3 35 35 H 1.09001 * 110.36377 * 81.83186 * 11 8 7 36 36 H 1.09001 * 110.36488 * 204.03935 * 11 8 7 37 37 H 1.08001 * 125.98639 * 0.02562 * 16 15 13 38 38 H 1.09005 * 109.47006 * 210.02103 * 19 18 17 39 39 H 1.08996 * 109.47148 * 330.02515 * 19 18 17 40 40 H 0.96997 * 119.99199 * 180.02562 * 23 22 20 41 41 H 1.08999 * 109.47428 * 270.18870 * 29 28 18 42 42 H 1.09008 * 109.46991 * 30.18879 * 29 28 18 43 43 H 1.08996 * 109.47307 * 150.18288 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0050 5 6 3.5663 1.2748 0.0006 6 1 3.9639 0.7755 -0.8830 7 6 4.1262 0.6101 1.2757 8 6 5.3120 1.5348 1.6577 9 1 6.2045 1.2824 1.0850 10 9 5.5690 1.4792 3.0318 11 6 4.7656 2.9258 1.2500 12 7 3.9933 2.6816 0.0183 13 6 3.7237 3.5963 -0.9342 14 8 3.1639 3.2594 -1.9597 15 6 4.1075 5.0054 -0.7327 16 6 4.6319 5.5708 0.4513 17 7 4.8439 6.8393 0.2334 18 7 4.4713 7.1418 -1.0811 19 6 4.5563 8.4607 -1.7130 20 6 5.9027 8.6161 -2.3720 21 1 6.6231 7.8129 -2.3244 22 6 6.2152 9.7841 -3.0347 23 7 5.3380 10.7624 -3.0921 24 14 7.8843 9.9771 -3.8509 25 1 7.8084 9.4938 -5.2531 26 1 8.2774 11.4090 -3.8414 27 1 8.8939 9.1815 -3.1072 28 6 4.0283 6.0180 -1.6675 29 6 3.5317 5.8873 -3.0842 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 3.3757 0.5988 2.0662 34 1 4.4748 -0.4005 1.0626 35 1 4.1178 3.3228 2.0315 36 1 5.5879 3.6139 1.0540 37 1 4.8245 5.0446 1.3746 38 1 3.7715 8.5553 -2.4635 39 1 4.4307 9.2350 -0.9562 40 1 5.5578 11.5839 -3.5587 41 1 2.4577 6.0709 -3.1112 42 1 4.0408 6.6150 -3.7163 43 1 3.7376 4.8814 -3.4500 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893539677.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:23 Heat of formation + Delta-G solvation = -103.507497 kcal Electronic energy + Delta-G solvation = -30026.233549 eV Core-core repulsion = 25601.375037 eV Total energy + Delta-G solvation = -4424.858513 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -48.64093 -42.52690 -41.83403 -40.25711 -38.22436 -37.43782 -35.85516 -34.04225 -33.04353 -32.35886 -30.97735 -29.19743 -28.39697 -28.27121 -25.71342 -25.37165 -23.43052 -22.69893 -22.24456 -21.05660 -20.00942 -19.10205 -18.89329 -18.40552 -17.86031 -17.67306 -17.39707 -16.93337 -16.55535 -16.38276 -16.31374 -15.81492 -15.69302 -15.44160 -14.90336 -14.72936 -14.42091 -14.33958 -14.27736 -14.12778 -13.99240 -13.71196 -13.63233 -13.54471 -13.13330 -13.02359 -12.98300 -12.73868 -12.69060 -12.32699 -12.21831 -11.88321 -11.85103 -11.82403 -11.71254 -11.45532 -10.95804 -10.76899 -10.32209 -10.01197 -9.52483 -8.38742 -6.55638 0.57371 1.08461 1.19665 1.36571 1.38057 1.40380 1.49904 1.64892 1.91778 2.32111 2.44401 2.93454 3.06132 3.11586 3.42036 3.66503 3.67885 3.76523 3.87600 3.97601 4.09992 4.16457 4.28356 4.29779 4.32353 4.36888 4.46116 4.60386 4.64050 4.68247 4.72976 4.78294 4.85372 4.99408 5.01308 5.07946 5.13427 5.29989 5.47865 5.58354 5.72733 5.99393 6.23314 6.53230 6.64488 6.75790 7.12070 7.15814 8.69449 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016913 B = 0.002923 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.170615 B = 9576.775458 C =10497.550091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.353 6.353 3 C 0.448 3.552 4 O -0.528 6.528 5 C 0.149 3.851 6 H 0.138 0.862 7 C -0.130 4.130 8 C 0.092 3.908 9 H 0.141 0.859 10 F -0.201 7.201 11 C 0.057 3.943 12 N -0.604 5.604 13 C 0.632 3.368 14 O -0.567 6.567 15 C -0.328 4.328 16 C 0.068 3.932 17 N -0.331 5.331 18 N -0.335 5.335 19 C 0.267 3.733 20 C -0.556 4.556 21 H 0.055 0.945 22 C 0.023 3.977 23 N -0.918 5.918 24 Si 0.974 3.026 25 H -0.266 1.266 26 H -0.275 1.275 27 H -0.271 1.271 28 C 0.150 3.850 29 C -0.087 4.087 30 H 0.050 0.950 31 H 0.139 0.861 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.148 0.852 35 H 0.087 0.913 36 H 0.110 0.890 37 H 0.225 0.775 38 H 0.049 0.951 39 H 0.032 0.968 40 H 0.274 0.726 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.661 -25.424 8.523 26.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.269 6.269 3 C 0.290 3.710 4 O -0.416 6.416 5 C 0.044 3.956 6 H 0.156 0.844 7 C -0.167 4.167 8 C 0.056 3.944 9 H 0.158 0.842 10 F -0.182 7.182 11 C -0.065 4.065 12 N -0.338 5.338 13 C 0.424 3.576 14 O -0.447 6.447 15 C -0.343 4.343 16 C -0.119 4.119 17 N -0.151 5.151 18 N -0.112 5.112 19 C 0.148 3.852 20 C -0.594 4.594 21 H 0.073 0.927 22 C -0.178 4.178 23 N -0.556 5.556 24 Si 0.797 3.203 25 H -0.191 1.191 26 H -0.200 1.200 27 H -0.196 1.196 28 C 0.014 3.986 29 C -0.145 4.145 30 H 0.069 0.931 31 H 0.157 0.843 32 H 0.078 0.922 33 H 0.113 0.887 34 H 0.166 0.834 35 H 0.106 0.894 36 H 0.128 0.872 37 H 0.241 0.759 38 H 0.067 0.933 39 H 0.050 0.950 40 H 0.084 0.916 41 H 0.105 0.895 42 H 0.093 0.907 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.825 -23.763 8.351 25.345 hybrid contribution -0.242 0.358 -0.670 0.797 sum -3.067 -23.404 7.681 24.823 Atomic orbital electron populations 1.23523 0.74994 1.05814 1.01999 1.86467 1.24696 1.31902 1.83801 1.24513 0.93103 0.81641 0.71791 1.90720 1.67564 1.37827 1.45442 1.21343 0.86186 0.83694 1.04416 0.84423 1.23281 0.97782 1.01649 0.94033 1.22724 1.00263 0.93747 0.77703 0.84175 1.92853 1.95499 1.96974 1.32838 1.23445 0.96902 0.99521 0.86681 1.47736 1.54733 1.09254 1.22084 1.16704 0.76279 0.83264 0.81321 1.90685 1.44392 1.81142 1.28440 1.19781 1.23808 0.94288 0.96462 1.24913 0.96529 0.91101 0.99325 1.77110 1.23770 1.17570 0.96610 1.49153 1.44194 1.09479 1.08411 1.19400 0.98387 0.75159 0.92238 1.21392 0.99985 1.02157 1.35827 0.92713 1.25767 1.01576 0.94496 0.95997 1.70009 1.36761 1.06264 1.42540 0.85314 0.78326 0.77753 0.78884 1.19076 1.19958 1.19600 1.21917 0.93703 0.86154 0.96874 1.20552 1.01529 1.04539 0.87906 0.93135 0.84262 0.92168 0.88744 0.83388 0.89444 0.87239 0.75882 0.93302 0.95017 0.91645 0.89526 0.90688 0.88344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.64 16 2 O -0.35 -6.64 10.53 -51.40 -0.54 -7.18 16 3 C 0.45 10.87 6.82 71.24 0.49 11.36 16 4 O -0.53 -17.83 14.97 25.71 0.38 -17.44 16 5 C 0.15 2.70 3.34 44.59 0.15 2.85 16 6 H 0.14 2.07 8.14 -2.38 -0.02 2.05 16 7 C -0.13 -1.20 6.25 31.78 0.20 -1.00 16 8 C 0.09 0.96 4.86 31.99 0.16 1.12 16 9 H 0.14 0.79 8.14 -2.39 -0.02 0.77 16 10 F -0.20 -2.79 17.24 44.97 0.78 -2.01 16 11 C 0.06 0.98 4.91 86.86 0.43 1.41 16 12 N -0.60 -14.65 2.84 -796.03 -2.26 -16.91 16 13 C 0.63 21.68 6.87 86.66 0.60 22.28 16 14 O -0.57 -22.37 14.54 3.90 0.06 -22.31 16 15 C -0.33 -12.44 6.05 -20.15 -0.12 -12.56 16 16 C 0.07 2.39 10.28 85.65 0.88 3.27 16 17 N -0.33 -14.65 12.50 -56.27 -0.70 -15.35 16 18 N -0.34 -15.89 3.56 -336.71 -1.20 -17.09 16 19 C 0.27 13.99 5.78 85.63 0.49 14.48 16 20 C -0.56 -30.62 9.39 25.60 0.24 -30.38 16 21 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 22 C 0.02 1.24 5.46 84.65 0.46 1.70 16 23 N -0.92 -51.63 13.29 21.45 0.28 -51.35 16 24 Si 0.97 42.44 29.54 68.60 2.03 44.46 16 25 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 26 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 27 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 28 C 0.15 6.39 7.00 42.14 0.30 6.68 16 29 C -0.09 -3.33 9.27 71.23 0.66 -2.67 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.14 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.06 0.93 8.13 -2.39 -0.02 0.91 16 33 H 0.09 0.96 7.84 -2.39 -0.02 0.94 16 34 H 0.15 0.35 8.14 -2.38 -0.02 0.33 16 35 H 0.09 1.50 7.72 -2.39 -0.02 1.48 16 36 H 0.11 1.85 5.93 -2.39 -0.01 1.83 16 37 H 0.23 5.61 4.87 -2.91 -0.01 5.60 16 38 H 0.05 2.58 7.64 -2.38 -0.02 2.56 16 39 H 0.03 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 41 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 42 H 0.07 2.95 7.71 -2.38 -0.02 2.93 16 43 H 0.10 3.60 6.68 -2.39 -0.02 3.58 16 Total: -1.00 -76.91 366.80 6.00 -70.91 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 1.05 Total: 14.11 kcal Atomic # 6 Polarization: 14.04 SS G_CDS: 6.12 Total: 20.16 kcal Atomic # 7 Polarization: -96.82 SS G_CDS: -3.88 Total: -100.70 kcal Atomic # 8 Polarization: -46.84 SS G_CDS: -0.10 Total: -46.94 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.78 Total: -2.01 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.46 kcal Total: -76.91 6.00 -70.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893539677.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.593 kcal (2) G-P(sol) polarization free energy of solvation -76.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds