Wall clock time and date at job start Sat Apr 11 2020 05:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00552 * 2 1 4 4 H 1.48500 * 109.47264 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47164 * 300.00177 * 3 2 1 6 6 H 1.48500 * 109.46704 * 60.00197 * 3 2 1 7 7 C 1.37885 * 119.99544 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99851 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99970 * 359.97438 * 7 2 1 10 10 H 1.09008 * 109.52566 * 59.92354 * 9 7 2 11 11 C 1.53036 * 109.50129 * 299.83800 * 9 7 2 12 12 C 1.53041 * 109.54158 * 178.68132 * 11 9 7 13 13 C 1.52763 * 109.37944 * 61.24324 * 12 11 9 14 14 N 1.46934 * 109.00932 * 305.58571 * 13 12 11 15 15 S 1.65596 * 120.63281 * 233.58580 * 14 13 12 16 16 O 1.42102 * 106.40279 * 156.17930 * 15 14 13 17 17 O 1.42097 * 106.40078 * 23.26246 * 15 14 13 18 18 C 1.76194 * 107.21936 * 269.72129 * 15 14 13 19 19 C 1.34854 * 126.65606 * 329.95809 * 18 15 14 20 20 N 1.34290 * 108.07404 * 180.02562 * 19 18 15 21 21 C 1.30086 * 109.21166 * 359.96760 * 20 19 18 22 22 N 1.35420 * 108.63052 * 0.05441 * 21 20 19 23 23 C 1.46471 * 124.82955 * 179.97438 * 22 21 20 24 24 C 1.53261 * 108.91110 * 342.83314 * 23 22 21 25 25 C 1.53439 * 109.34879 * 50.29916 * 24 23 22 26 26 C 1.51045 * 127.38809 * 180.08196 * 21 20 19 27 27 C 1.46932 * 118.73394 * 53.31282 * 14 13 12 28 28 H 0.96999 * 119.99287 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.45919 * 298.70516 * 11 9 7 30 30 H 1.09001 * 109.45998 * 58.67406 * 11 9 7 31 31 H 1.08997 * 109.49839 * 181.31698 * 12 11 9 32 32 H 1.08993 * 109.49885 * 301.41823 * 12 11 9 33 33 H 1.08999 * 109.50881 * 185.71141 * 13 12 11 34 34 H 1.08993 * 109.43442 * 65.41951 * 13 12 11 35 35 H 1.08001 * 125.96333 * 359.97438 * 19 18 15 36 36 H 1.09002 * 109.58294 * 102.69554 * 23 22 21 37 37 H 1.09005 * 109.58543 * 222.97102 * 23 22 21 38 38 H 1.08995 * 109.47151 * 170.42971 * 24 23 22 39 39 H 1.09006 * 109.46377 * 290.41307 * 24 23 22 40 40 H 1.08993 * 109.46883 * 170.64945 * 25 24 23 41 41 H 1.09003 * 109.48942 * 50.54087 * 25 24 23 42 42 H 1.08999 * 109.71716 * 283.65323 * 26 21 20 43 43 H 1.08997 * 109.71566 * 44.26240 * 26 21 20 44 44 H 1.08993 * 109.58622 * 66.43273 * 27 14 13 45 45 H 1.08999 * 109.58064 * 186.86112 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8906 2.3964 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0044 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6224 -2.5570 -0.8894 11 6 0.3743 -2.5829 1.2511 12 6 -0.4163 -3.8932 1.2357 13 6 0.5556 -5.0718 1.2459 14 7 1.4998 -4.9231 0.1300 15 16 1.7142 -6.1486 -0.9629 16 8 2.1996 -5.5440 -2.1537 17 8 0.5333 -6.9378 -0.9176 18 6 3.0171 -7.1674 -0.3554 19 6 4.0612 -6.7731 0.4016 20 7 4.8252 -7.8490 0.6504 21 6 4.2960 -8.8912 0.0793 22 7 3.1656 -8.5069 -0.5597 23 6 2.2897 -9.4009 -1.3207 24 6 3.0521 -10.6923 -1.6371 25 6 3.6801 -11.2406 -0.3490 26 6 4.8151 -10.3095 0.0972 27 6 2.2458 -3.6641 -0.0012 28 1 -0.4849 0.8401 0.0004 29 1 1.0053 -2.5500 2.1392 30 1 -0.3183 -1.7413 1.2664 31 1 -1.0578 -3.9415 2.1156 32 1 -1.0289 -3.9379 0.3353 33 1 0.0000 -6.0027 1.1327 34 1 1.1027 -5.0825 2.1885 35 1 4.2504 -5.7673 0.7466 36 1 1.4042 -9.6350 -0.7298 37 1 1.9911 -8.9159 -2.2501 38 1 2.3633 -11.4286 -2.0511 39 1 3.8378 -10.4817 -2.3628 40 1 4.0794 -12.2375 -0.5353 41 1 2.9217 -11.2915 0.4323 42 1 5.6584 -10.4011 -0.5873 43 1 5.1307 -10.5728 1.1067 44 1 2.9335 -3.5577 0.8377 45 1 2.8049 -3.6665 -0.9368 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907281288.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:57 Heat of formation + Delta-G solvation = -24.990568 kcal Electronic energy + Delta-G solvation = -28572.081051 eV Core-core repulsion = 24716.840464 eV Total energy + Delta-G solvation = -3855.240587 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.52434 -37.79507 -37.14212 -36.88090 -35.68143 -33.61326 -33.32463 -31.21274 -30.19463 -30.12551 -28.93968 -25.13320 -24.77496 -23.70346 -22.73889 -22.10782 -21.68941 -19.74758 -19.42466 -18.62416 -17.48778 -17.24938 -16.45328 -16.17280 -15.66142 -15.53576 -14.89141 -14.78965 -14.62947 -14.57586 -14.13333 -13.97650 -13.47440 -13.31264 -13.11973 -12.84433 -12.70919 -12.32493 -12.19826 -12.02124 -11.90106 -11.83289 -11.63160 -11.56095 -11.42273 -11.23084 -10.98482 -10.85703 -10.69103 -10.22766 -10.21046 -9.94456 -9.87407 -9.82926 -9.40181 -8.88520 -8.83190 -8.49176 -8.22875 -6.00963 -4.08140 0.49349 1.41041 2.41329 2.81284 3.16345 3.30169 3.38670 3.42519 3.80478 3.89483 4.08294 4.19457 4.22319 4.42534 4.69517 4.78639 4.86322 4.95810 5.02376 5.16718 5.19955 5.23347 5.29593 5.32608 5.34910 5.47277 5.65253 5.66607 5.75485 5.89412 6.01135 6.19900 6.30928 6.40371 6.43756 6.59257 6.61262 6.83627 6.84860 6.97006 7.20617 7.42584 7.71395 7.72219 7.94807 8.09029 8.38497 8.95353 9.56771 11.04668 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023275 B = 0.003181 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.694435 B = 8800.016069 C = 9207.021223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.514 4.514 8 H 0.059 0.941 9 C 0.043 3.957 10 H 0.033 0.967 11 C -0.111 4.111 12 C -0.131 4.131 13 C 0.124 3.876 14 N -0.981 5.981 15 S 2.710 3.290 16 O -0.944 6.944 17 O -0.964 6.964 18 C -0.592 4.592 19 C 0.091 3.909 20 N -0.494 5.494 21 C 0.241 3.759 22 N -0.404 5.404 23 C 0.086 3.914 24 C -0.136 4.136 25 C -0.128 4.128 26 C -0.038 4.038 27 C 0.119 3.881 28 H 0.260 0.740 29 H 0.037 0.963 30 H 0.095 0.905 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.185 0.815 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.095 0.905 43 H 0.100 0.900 44 H 0.061 0.939 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.372 -22.188 0.890 22.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.553 4.553 8 H 0.077 0.923 9 C 0.023 3.977 10 H 0.051 0.949 11 C -0.149 4.149 12 C -0.170 4.170 13 C -0.001 4.001 14 N -0.822 5.822 15 S 2.795 3.205 16 O -0.934 6.934 17 O -0.954 6.954 18 C -0.786 4.786 19 C -0.063 4.063 20 N -0.213 5.213 21 C -0.023 4.023 22 N -0.084 5.084 23 C -0.036 4.036 24 C -0.173 4.173 25 C -0.166 4.166 26 C -0.077 4.077 27 C -0.004 4.004 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.114 0.886 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.202 0.798 36 H 0.121 0.879 37 H 0.111 0.889 38 H 0.115 0.885 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.093 0.907 42 H 0.113 0.887 43 H 0.119 0.881 44 H 0.080 0.920 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.407 -22.371 0.471 22.806 hybrid contribution 0.252 0.915 0.077 0.952 sum 4.659 -21.456 0.548 21.963 Atomic orbital electron populations 1.69886 1.05897 1.26389 1.50450 1.24942 0.94857 0.99092 0.94956 0.86526 0.80184 0.83702 0.77507 1.19700 1.21074 1.21108 1.21121 0.93075 0.90182 1.50966 0.92256 1.18949 0.92905 0.90684 0.95196 0.94897 1.21604 0.99425 0.95370 0.98483 1.21882 0.97539 0.96429 1.01154 1.21404 0.90660 0.99800 0.88265 1.57507 1.53062 1.27135 1.44543 1.01678 0.72709 0.72617 0.73537 1.93619 1.81685 1.75620 1.42469 1.93524 1.44639 1.70673 1.86580 1.34053 1.24930 0.96044 1.23585 1.22420 0.89574 0.98757 0.95567 1.70127 1.29349 0.98048 1.23755 1.23827 0.86303 0.97486 0.94706 1.44939 1.20090 1.05441 1.37973 1.22324 0.93519 0.90584 0.97142 1.21996 1.00972 0.95522 0.98826 1.21776 0.98023 0.99333 0.97432 1.20336 0.98269 0.84636 1.04430 1.22010 0.95235 0.81914 1.01283 0.93006 0.94432 0.88632 0.92304 0.92212 0.90345 0.91877 0.79844 0.87930 0.88892 0.88522 0.90288 0.89494 0.90734 0.88666 0.88138 0.92041 0.89996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.65 11.32 55.43 0.63 -24.02 16 2 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 3 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.51 -13.54 8.56 -34.44 -0.29 -13.83 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.04 1.03 2.25 -91.65 -0.21 0.82 16 10 H 0.03 0.88 8.14 -51.92 -0.42 0.46 16 11 C -0.11 -2.45 4.96 -26.69 -0.13 -2.58 16 12 C -0.13 -2.38 6.07 -26.83 -0.16 -2.54 16 13 C 0.12 2.00 6.45 -3.93 -0.03 1.97 16 14 N -0.98 -17.29 3.25 -113.76 -0.37 -17.66 16 15 S 2.71 46.89 5.72 -107.50 -0.62 46.28 16 16 O -0.94 -19.20 16.61 -57.17 -0.95 -20.15 16 17 O -0.96 -17.12 15.87 -57.17 -0.91 -18.03 16 18 C -0.59 -9.27 6.94 -16.76 -0.12 -9.39 16 19 C 0.09 1.42 11.77 -17.68 -0.21 1.22 16 20 N -0.49 -7.64 11.24 -10.62 -0.12 -7.76 16 21 C 0.24 3.13 7.65 -155.24 -1.19 1.94 16 22 N -0.40 -5.47 3.13 -112.79 -0.35 -5.82 16 23 C 0.09 0.88 6.11 -3.92 -0.02 0.85 16 24 C -0.14 -0.86 5.97 -26.37 -0.16 -1.02 16 25 C -0.13 -0.72 5.96 -26.28 -0.16 -0.88 16 26 C -0.04 -0.30 6.34 -27.49 -0.17 -0.47 16 27 C 0.12 2.36 5.70 -3.71 -0.02 2.34 16 28 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 29 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.10 2.40 6.05 -51.93 -0.31 2.08 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.08 1.16 6.91 -51.93 -0.36 0.80 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.18 2.53 8.06 -52.49 -0.42 2.11 16 36 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.50 8.12 -51.93 -0.42 0.08 16 40 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 41 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 42 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.08 1.65 6.92 -51.93 -0.36 1.29 16 LS Contribution 365.97 15.07 5.52 5.52 Total: -1.00 -33.40 365.97 -12.07 -45.46 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -6.91 Total: 0.34 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: -2.96 Total: -19.96 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: -0.21 Total: -55.27 kcal Atomic # 8 Polarization: -36.32 SS G_CDS: -1.86 Total: -38.18 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 46.89 SS G_CDS: -0.62 Total: 46.28 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.40 -12.07 -45.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907281288.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.473 kcal (2) G-P(sol) polarization free energy of solvation -33.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds