Wall clock time and date at job start Sat Apr 11 2020 05:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00552 * 2 1 4 4 H 1.48500 * 109.47264 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47164 * 300.00177 * 3 2 1 6 6 H 1.48500 * 109.46704 * 60.00197 * 3 2 1 7 7 C 1.37885 * 119.99544 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99851 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99970 * 359.97438 * 7 2 1 10 10 H 1.09008 * 109.52566 * 59.92354 * 9 7 2 11 11 C 1.53036 * 109.50129 * 299.83800 * 9 7 2 12 12 C 1.53041 * 109.54158 * 178.68132 * 11 9 7 13 13 C 1.52763 * 109.37944 * 61.24324 * 12 11 9 14 14 N 1.46934 * 109.00932 * 305.58571 * 13 12 11 15 15 S 1.65596 * 120.63281 * 233.58580 * 14 13 12 16 16 O 1.42102 * 106.40279 * 156.17930 * 15 14 13 17 17 O 1.42097 * 106.40078 * 23.26246 * 15 14 13 18 18 C 1.76194 * 107.21936 * 269.72129 * 15 14 13 19 19 C 1.34854 * 126.65606 * 329.95809 * 18 15 14 20 20 N 1.34290 * 108.07404 * 180.02562 * 19 18 15 21 21 C 1.30086 * 109.21166 * 359.96760 * 20 19 18 22 22 N 1.35420 * 108.63052 * 0.05441 * 21 20 19 23 23 C 1.46471 * 124.82955 * 179.97438 * 22 21 20 24 24 C 1.53261 * 108.91110 * 342.83314 * 23 22 21 25 25 C 1.53439 * 109.34879 * 50.29916 * 24 23 22 26 26 C 1.51045 * 127.38809 * 180.08196 * 21 20 19 27 27 C 1.46932 * 118.73394 * 53.31282 * 14 13 12 28 28 H 0.96999 * 119.99287 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.45919 * 298.70516 * 11 9 7 30 30 H 1.09001 * 109.45998 * 58.67406 * 11 9 7 31 31 H 1.08997 * 109.49839 * 181.31698 * 12 11 9 32 32 H 1.08993 * 109.49885 * 301.41823 * 12 11 9 33 33 H 1.08999 * 109.50881 * 185.71141 * 13 12 11 34 34 H 1.08993 * 109.43442 * 65.41951 * 13 12 11 35 35 H 1.08001 * 125.96333 * 359.97438 * 19 18 15 36 36 H 1.09002 * 109.58294 * 102.69554 * 23 22 21 37 37 H 1.09005 * 109.58543 * 222.97102 * 23 22 21 38 38 H 1.08995 * 109.47151 * 170.42971 * 24 23 22 39 39 H 1.09006 * 109.46377 * 290.41307 * 24 23 22 40 40 H 1.08993 * 109.46883 * 170.64945 * 25 24 23 41 41 H 1.09003 * 109.48942 * 50.54087 * 25 24 23 42 42 H 1.08999 * 109.71716 * 283.65323 * 26 21 20 43 43 H 1.08997 * 109.71566 * 44.26240 * 26 21 20 44 44 H 1.08993 * 109.58622 * 66.43273 * 27 14 13 45 45 H 1.08999 * 109.58064 * 186.86112 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8906 2.3964 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0044 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6224 -2.5570 -0.8894 11 6 0.3743 -2.5829 1.2511 12 6 -0.4163 -3.8932 1.2357 13 6 0.5556 -5.0718 1.2459 14 7 1.4998 -4.9231 0.1300 15 16 1.7142 -6.1486 -0.9629 16 8 2.1996 -5.5440 -2.1537 17 8 0.5333 -6.9378 -0.9176 18 6 3.0171 -7.1674 -0.3554 19 6 4.0612 -6.7731 0.4016 20 7 4.8252 -7.8490 0.6504 21 6 4.2960 -8.8912 0.0793 22 7 3.1656 -8.5069 -0.5597 23 6 2.2897 -9.4009 -1.3207 24 6 3.0521 -10.6923 -1.6371 25 6 3.6801 -11.2406 -0.3490 26 6 4.8151 -10.3095 0.0972 27 6 2.2458 -3.6641 -0.0012 28 1 -0.4849 0.8401 0.0004 29 1 1.0053 -2.5500 2.1392 30 1 -0.3183 -1.7413 1.2664 31 1 -1.0578 -3.9415 2.1156 32 1 -1.0289 -3.9379 0.3353 33 1 0.0000 -6.0027 1.1327 34 1 1.1027 -5.0825 2.1885 35 1 4.2504 -5.7673 0.7466 36 1 1.4042 -9.6350 -0.7298 37 1 1.9911 -8.9159 -2.2501 38 1 2.3633 -11.4286 -2.0511 39 1 3.8378 -10.4817 -2.3628 40 1 4.0794 -12.2375 -0.5353 41 1 2.9217 -11.2915 0.4323 42 1 5.6584 -10.4011 -0.5873 43 1 5.1307 -10.5728 1.1067 44 1 2.9335 -3.5577 0.8377 45 1 2.8049 -3.6665 -0.9368 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907281288.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:56 Heat of formation + Delta-G solvation = -46.769907 kcal Electronic energy + Delta-G solvation = -28573.025474 eV Core-core repulsion = 24716.840464 eV Total energy + Delta-G solvation = -3856.185010 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.53635 -39.37786 -38.53512 -37.66581 -37.13280 -35.23029 -34.44403 -32.82019 -31.89594 -31.04290 -29.85910 -27.04057 -25.51015 -25.24800 -23.61513 -23.40976 -23.05589 -21.25318 -20.43126 -19.80912 -18.87128 -18.67835 -18.04693 -17.49135 -16.87897 -16.78177 -16.51962 -15.64834 -15.54884 -15.47984 -15.20725 -15.15008 -14.90318 -14.82125 -14.48308 -14.34863 -13.94163 -13.88079 -13.45085 -13.37120 -13.09226 -13.01070 -12.96337 -12.82072 -12.68326 -12.50068 -12.15444 -12.07177 -11.93390 -11.85740 -11.79032 -11.58797 -11.30529 -11.08947 -10.88725 -10.75036 -10.41067 -9.97430 -9.85734 -8.05451 -6.19616 -0.88584 0.30981 1.43663 1.44259 1.46630 1.57229 1.73264 1.84614 2.46324 2.49049 3.13906 3.22122 3.30951 3.42980 3.60114 3.64004 3.75385 4.02709 4.16084 4.20743 4.25422 4.28684 4.32892 4.40773 4.55492 4.61276 4.72160 4.77170 4.79507 4.85539 4.85965 4.94660 5.00068 5.04697 5.07888 5.22189 5.26731 5.31593 5.34452 5.51913 5.66907 5.71607 5.91387 6.00527 6.18970 6.39957 6.66208 6.92115 7.48341 8.98944 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023275 B = 0.003181 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.694435 B = 8800.016069 C = 9207.021223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.014 3.986 3 Si 0.954 3.046 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.280 1.280 7 C -0.531 4.531 8 H 0.062 0.938 9 C 0.036 3.964 10 H -0.010 1.010 11 C -0.104 4.104 12 C -0.127 4.127 13 C 0.122 3.878 14 N -0.984 5.984 15 S 2.729 3.271 16 O -0.983 6.983 17 O -0.972 6.972 18 C -0.609 4.609 19 C 0.085 3.915 20 N -0.524 5.524 21 C 0.248 3.752 22 N -0.409 5.409 23 C 0.068 3.932 24 C -0.130 4.130 25 C -0.121 4.121 26 C -0.041 4.041 27 C 0.130 3.870 28 H 0.260 0.740 29 H 0.044 0.956 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.041 0.959 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.192 0.808 36 H 0.108 0.892 37 H 0.084 0.916 38 H 0.125 0.875 39 H 0.080 0.920 40 H 0.120 0.880 41 H 0.073 0.927 42 H 0.112 0.888 43 H 0.114 0.886 44 H 0.083 0.917 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.604 -24.908 1.885 25.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.185 4.185 3 Si 0.780 3.220 4 H -0.189 1.189 5 H -0.213 1.213 6 H -0.206 1.206 7 C -0.570 4.570 8 H 0.080 0.920 9 C 0.016 3.984 10 H 0.008 0.992 11 C -0.142 4.142 12 C -0.166 4.166 13 C -0.002 4.002 14 N -0.826 5.826 15 S 2.818 3.182 16 O -0.972 6.972 17 O -0.962 6.962 18 C -0.806 4.806 19 C -0.070 4.070 20 N -0.243 5.243 21 C -0.017 4.017 22 N -0.089 5.089 23 C -0.052 4.052 24 C -0.168 4.168 25 C -0.159 4.159 26 C -0.079 4.079 27 C 0.006 3.994 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.060 0.940 33 H 0.115 0.885 34 H 0.108 0.892 35 H 0.209 0.791 36 H 0.126 0.874 37 H 0.102 0.898 38 H 0.144 0.856 39 H 0.098 0.902 40 H 0.139 0.861 41 H 0.092 0.908 42 H 0.130 0.870 43 H 0.132 0.868 44 H 0.101 0.899 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.602 -25.091 1.452 25.750 hybrid contribution -0.125 1.679 -0.253 1.702 sum 5.476 -23.412 1.199 24.074 Atomic orbital electron populations 1.70034 1.07194 1.26987 1.51307 1.25709 0.95633 1.02324 0.94856 0.85564 0.79296 0.79793 0.77331 1.18851 1.21275 1.20577 1.21523 0.93449 0.91530 1.50524 0.92015 1.18915 0.93415 0.91772 0.94277 0.99170 1.21403 0.98838 0.96330 0.97640 1.21818 0.97784 0.95297 1.01669 1.21568 0.90351 0.99395 0.88870 1.57386 1.53543 1.26641 1.44980 1.00719 0.72547 0.72303 0.72645 1.93569 1.82368 1.76628 1.44669 1.93499 1.45460 1.70631 1.86605 1.33478 1.24687 0.97393 1.25086 1.22690 0.89526 0.99492 0.95334 1.70151 1.30175 0.98717 1.25283 1.24844 0.85332 0.98955 0.92561 1.45228 1.20713 1.04846 1.38117 1.22737 0.94166 0.91829 0.96490 1.22081 1.01277 0.93940 0.99459 1.21811 0.97174 1.00175 0.96746 1.20694 0.99547 0.81849 1.05850 1.21697 0.94395 0.81486 1.01817 0.93119 0.93746 0.92046 0.89413 0.94031 0.88514 0.89165 0.79075 0.87428 0.89779 0.85638 0.90174 0.86134 0.90815 0.87023 0.86829 0.89889 0.90878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.54 11.32 21.45 0.24 -52.30 16 2 C 0.01 0.74 5.30 84.66 0.45 1.19 16 3 Si 0.95 43.32 29.54 68.60 2.03 45.35 16 4 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.53 -28.61 8.56 25.60 0.22 -28.39 16 8 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 9 C 0.04 1.80 2.25 -11.46 -0.03 1.77 16 10 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 11 C -0.10 -4.67 4.96 30.62 0.15 -4.52 16 12 C -0.13 -4.56 6.07 30.53 0.19 -4.37 16 13 C 0.12 3.77 6.45 86.22 0.56 4.33 16 14 N -0.98 -34.59 3.25 -513.82 -1.67 -36.26 16 15 S 2.73 95.13 5.72 -56.49 -0.32 94.81 16 16 O -0.98 -41.26 16.61 -128.00 -2.13 -43.39 16 17 O -0.97 -34.28 15.87 -128.00 -2.03 -36.31 16 18 C -0.61 -18.76 6.94 83.22 0.58 -18.19 16 19 C 0.09 2.59 11.77 83.54 0.98 3.58 16 20 N -0.52 -15.57 11.24 -187.51 -2.11 -17.68 16 21 C 0.25 5.95 7.65 138.24 1.06 7.01 16 22 N -0.41 -10.54 3.13 -510.77 -1.60 -12.14 16 23 C 0.07 1.29 6.11 86.47 0.53 1.82 16 24 C -0.13 -1.23 5.97 30.83 0.18 -1.05 16 25 C -0.12 -0.87 5.96 30.89 0.18 -0.69 16 26 C -0.04 -0.51 6.34 30.10 0.19 -0.31 16 27 C 0.13 5.24 5.70 86.36 0.49 5.73 16 28 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 29 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.06 3.19 6.05 -2.39 -0.01 3.17 16 31 H 0.09 2.64 8.14 -2.39 -0.02 2.63 16 32 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.10 2.67 6.91 -2.39 -0.02 2.65 16 34 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.19 5.20 8.06 -2.91 -0.02 5.18 16 36 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.08 1.69 8.14 -2.38 -0.02 1.68 16 38 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.08 0.77 8.12 -2.38 -0.02 0.75 16 40 H 0.12 0.15 8.14 -2.39 -0.02 0.13 16 41 H 0.07 0.59 8.12 -2.39 -0.02 0.57 16 42 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 45 H 0.07 3.04 6.92 -2.39 -0.02 3.02 16 Total: -1.00 -74.94 365.97 -0.87 -75.82 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 0.98 Total: 14.19 kcal Atomic # 6 Polarization: -37.82 SS G_CDS: 5.73 Total: -32.09 kcal Atomic # 7 Polarization: -113.24 SS G_CDS: -5.14 Total: -118.38 kcal Atomic # 8 Polarization: -75.54 SS G_CDS: -4.16 Total: -79.70 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: 95.13 SS G_CDS: -0.32 Total: 94.81 kcal Total: -74.94 -0.87 -75.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907281288.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.046 kcal (2) G-P(sol) polarization free energy of solvation -74.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds