Wall clock time and date at job start Sat Apr 11 2020 05:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86802 * 119.99800 * 2 1 4 4 H 1.48499 * 109.46877 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46716 * 299.99687 * 3 2 1 6 6 H 1.48497 * 109.47192 * 59.99929 * 3 2 1 7 7 C 1.40026 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00555 * 197.16829 * 7 2 1 9 9 C 1.41544 * 120.00066 * 17.17179 * 7 2 1 10 10 C 1.41180 * 120.99925 * 203.37644 * 9 7 2 11 11 C 1.37587 * 119.02321 * 179.97438 * 10 9 7 12 12 N 1.32079 * 121.10894 * 359.97417 * 11 10 9 13 13 C 1.32479 * 122.23420 * 0.02893 * 12 11 10 14 14 N 1.39382 * 119.58593 * 179.97438 * 13 12 11 15 15 C 1.34774 * 119.99794 * 355.29404 * 14 13 12 16 16 O 1.21520 * 119.99903 * 4.85648 * 15 14 13 17 17 C 1.48121 * 120.00003 * 184.85741 * 15 14 13 18 18 C 1.39406 * 120.66273 * 0.02562 * 17 15 14 19 19 C 1.38857 * 118.60773 * 179.97438 * 18 17 15 20 20 O 1.35696 * 119.69808 * 180.15650 * 19 18 17 21 21 N 1.31836 * 120.60908 * 0.12446 * 19 18 17 22 22 C 1.32734 * 122.69712 * 359.94980 * 21 19 18 23 23 C 1.37452 * 120.23704 * 359.55662 * 22 21 19 24 24 C 1.50486 * 122.88781 * 180.44841 * 23 22 21 25 25 C 1.52766 * 110.63015 * 342.72724 * 24 23 22 26 26 C 1.53322 * 108.33814 * 50.65370 * 25 24 23 27 27 C 1.50756 * 117.46301 * 179.58751 * 22 21 19 28 28 C 1.38632 * 120.83264 * 0.24996 * 13 12 11 29 29 H 0.96993 * 120.00204 * 359.97438 * 1 2 3 30 30 H 1.08005 * 120.48439 * 359.97438 * 10 9 7 31 31 H 1.07997 * 119.44603 * 180.02562 * 11 10 9 32 32 H 0.96996 * 119.99887 * 175.56236 * 14 13 12 33 33 H 1.07998 * 120.69989 * 359.96371 * 18 17 15 34 34 H 0.96697 * 114.00048 * 89.99084 * 20 19 18 35 35 H 1.09000 * 109.39753 * 222.32391 * 24 23 22 36 36 H 1.08998 * 109.03183 * 102.89929 * 24 23 22 37 37 H 1.09000 * 109.69521 * 290.93978 * 25 24 23 38 38 H 1.09007 * 109.69139 * 170.36448 * 25 24 23 39 39 H 1.09004 * 109.64338 * 170.54083 * 26 25 24 40 40 H 1.08999 * 109.64662 * 49.91761 * 26 25 24 41 41 H 1.09005 * 109.25217 * 282.43908 * 27 22 21 42 42 H 1.09006 * 109.24834 * 41.89394 * 27 22 21 43 43 H 1.08002 * 120.59791 * 179.74474 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3464 0.0006 5 1 1.8826 2.3964 -1.2126 6 1 1.8826 2.3965 1.2125 7 6 2.0076 -1.2126 0.0005 8 1 3.0515 -1.2334 0.2766 9 6 1.3472 -2.4113 -0.3608 10 6 1.8258 -3.6654 0.0766 11 6 1.1520 -4.8049 -0.2985 12 7 0.0717 -4.7407 -1.0558 13 6 -0.4179 -3.5898 -1.4923 14 7 -1.5614 -3.5864 -2.2892 15 6 -2.1071 -4.7519 -2.6897 16 8 -1.6557 -5.8049 -2.2848 17 6 -3.2569 -4.7491 -3.6235 18 6 -3.7852 -3.5491 -4.0971 19 6 -4.8631 -3.5963 -4.9712 20 8 -5.3928 -2.4417 -5.4484 21 7 -5.3762 -4.7526 -5.3424 22 6 -4.9044 -5.9170 -4.9141 23 6 -3.8325 -5.9556 -4.0546 24 6 -3.2436 -7.2412 -3.5399 25 6 -4.2206 -8.3986 -3.7392 26 6 -4.6915 -8.3865 -5.1983 27 6 -5.5872 -7.1675 -5.4069 28 6 0.1960 -2.3890 -1.1712 29 1 -0.4850 0.8400 0.0004 30 1 2.7080 -3.7294 0.6964 31 1 1.5119 -5.7678 0.0326 32 1 -1.9622 -2.7453 -2.5588 33 1 -3.3652 -2.6026 -3.7904 34 1 -4.9893 -2.1347 -6.2717 35 1 -3.0209 -7.1378 -2.4779 36 1 -2.3216 -7.4518 -4.0817 37 1 -5.0768 -8.2749 -3.0760 38 1 -3.7208 -9.3427 -3.5224 39 1 -5.2549 -9.2955 -5.4091 40 1 -3.8285 -8.3248 -5.8614 41 1 -6.5189 -7.3081 -4.8588 42 1 -5.8078 -7.0617 -6.4691 43 1 -0.2041 -1.4531 -1.5325 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934859721.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:17 Heat of formation + Delta-G solvation = -7.114446 kcal Electronic energy + Delta-G solvation = -28490.442136 eV Core-core repulsion = 24500.532765 eV Total energy + Delta-G solvation = -3989.909371 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.21494 -39.51348 -38.20372 -37.70538 -35.77270 -34.51690 -33.92549 -33.29755 -30.64782 -30.18750 -29.72924 -28.55417 -26.08965 -25.01716 -23.50709 -23.40897 -22.11320 -21.49862 -20.46930 -19.61183 -18.68244 -17.89091 -17.14303 -16.93632 -16.02159 -15.74864 -15.42759 -15.22893 -14.81572 -14.52823 -14.32593 -14.29143 -14.04345 -13.95332 -13.59051 -13.41585 -13.07978 -12.78581 -12.67542 -12.42194 -12.36572 -11.97288 -11.70219 -11.52689 -11.27632 -11.02572 -10.98857 -10.92854 -10.78060 -10.36591 -10.23613 -9.97036 -9.87543 -9.79526 -9.43410 -9.15088 -8.72464 -8.09597 -7.82405 -7.14869 -6.89577 -4.68846 0.61181 0.83188 2.50498 2.70756 2.97481 3.02475 3.05285 3.19893 3.31406 3.43983 3.76105 3.79105 4.23511 4.51752 4.59459 4.64379 4.71879 4.80068 4.83925 4.98566 5.24165 5.34220 5.43161 5.46024 5.55061 5.59230 5.65721 5.76592 5.80906 5.90208 5.93864 6.08033 6.22735 6.26741 6.43909 6.53927 6.56087 6.72456 6.85504 7.01812 7.28608 7.29768 7.35076 7.64199 7.73319 7.81702 8.08879 8.31129 8.58161 8.65856 8.71358 9.57637 9.98099 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015554 B = 0.002960 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.732653 B = 9458.739562 C =11132.205329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.078 3.922 3 Si 0.911 3.089 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.453 4.453 8 H 0.084 0.916 9 C 0.143 3.857 10 C -0.283 4.283 11 C 0.120 3.880 12 N -0.555 5.555 13 C 0.335 3.665 14 N -0.648 5.648 15 C 0.541 3.459 16 O -0.459 6.459 17 C -0.070 4.070 18 C -0.158 4.158 19 C 0.306 3.694 20 O -0.479 6.479 21 N -0.496 5.496 22 C 0.150 3.850 23 C -0.077 4.077 24 C -0.084 4.084 25 C -0.124 4.124 26 C -0.121 4.121 27 C -0.065 4.065 28 C -0.242 4.242 29 H 0.282 0.718 30 H 0.103 0.897 31 H 0.125 0.875 32 H 0.407 0.593 33 H 0.146 0.854 34 H 0.399 0.601 35 H 0.112 0.888 36 H 0.084 0.916 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.071 -6.933 -10.617 15.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.484 4.484 8 H 0.102 0.898 9 C 0.135 3.865 10 C -0.307 4.307 11 C -0.034 4.034 12 N -0.274 5.274 13 C 0.111 3.889 14 N -0.294 5.294 15 C 0.326 3.674 16 O -0.330 6.330 17 C -0.081 4.081 18 C -0.180 4.180 19 C 0.126 3.874 20 O -0.286 6.286 21 N -0.215 5.215 22 C 0.014 3.986 23 C -0.080 4.080 24 C -0.121 4.121 25 C -0.162 4.162 26 C -0.159 4.159 27 C -0.103 4.103 28 C -0.267 4.267 29 H 0.094 0.906 30 H 0.121 0.879 31 H 0.142 0.858 32 H 0.244 0.756 33 H 0.163 0.837 34 H 0.257 0.743 35 H 0.130 0.870 36 H 0.103 0.897 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.458 -8.313 -10.653 17.087 hybrid contribution 1.396 2.572 0.272 2.939 sum -9.062 -5.741 -10.381 14.928 Atomic orbital electron populations 1.69776 1.07738 1.29472 1.34084 1.25975 0.94771 1.01591 0.91803 0.86209 0.81058 0.80517 0.78713 1.18227 1.19557 1.19822 1.19623 0.98088 0.90688 1.40016 0.89830 1.17563 0.89785 0.92344 0.86823 1.21906 1.05266 0.93828 1.09673 1.21754 0.90906 0.96884 0.93835 1.67187 1.15723 1.26322 1.18195 1.18108 0.87056 0.91085 0.92658 1.43300 1.27335 1.08672 1.50104 1.18126 0.82975 0.84793 0.81555 1.90808 1.59166 1.29521 1.53485 1.20497 0.96935 0.93082 0.97630 1.22327 0.96487 0.99112 1.00043 1.18760 0.89582 0.85064 0.94020 1.84818 1.63856 1.34978 1.44957 1.66803 1.30644 0.98067 1.26009 1.20737 0.92405 0.92210 0.93283 1.20631 0.95564 0.95879 0.95916 1.20790 0.97691 0.89074 1.04538 1.21681 0.99475 0.98858 0.96182 1.21613 0.99625 0.97036 0.97612 1.20382 0.98351 0.89429 1.02113 1.21537 1.02430 0.95494 1.07238 0.90650 0.87892 0.85762 0.75644 0.83665 0.74328 0.87045 0.89744 0.91671 0.90896 0.90849 0.91353 0.89666 0.89643 0.85454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.84 10.93 55.55 0.61 -18.23 16 2 C 0.08 1.83 5.19 -17.35 -0.09 1.74 16 3 Si 0.91 17.44 29.59 -169.99 -5.03 12.41 16 4 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 5 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 6 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 7 C -0.45 -11.34 9.12 -37.65 -0.34 -11.68 16 8 H 0.08 2.01 7.90 -52.49 -0.41 1.59 16 9 C 0.14 3.66 5.61 -106.55 -0.60 3.06 16 10 C -0.28 -6.74 9.90 -38.70 -0.38 -7.12 16 11 C 0.12 2.79 11.15 -17.68 -0.20 2.59 16 12 N -0.55 -13.61 7.84 -12.54 -0.10 -13.71 16 13 C 0.34 7.88 7.42 -154.77 -1.15 6.73 16 14 N -0.65 -12.49 5.34 -12.27 -0.07 -12.56 16 15 C 0.54 10.06 7.70 -12.20 -0.09 9.97 16 16 O -0.46 -9.71 11.46 5.35 0.06 -9.65 16 17 C -0.07 -1.07 5.91 -104.57 -0.62 -1.69 16 18 C -0.16 -2.10 9.55 -38.92 -0.37 -2.47 16 19 C 0.31 4.02 7.75 -17.32 -0.13 3.89 16 20 O -0.48 -5.32 13.56 -18.79 -0.25 -5.58 16 21 N -0.50 -6.81 10.18 -9.62 -0.10 -6.91 16 22 C 0.15 1.92 6.62 -82.46 -0.55 1.37 16 23 C -0.08 -1.08 5.77 -104.18 -0.60 -1.68 16 24 C -0.08 -1.11 4.29 -28.11 -0.12 -1.23 16 25 C -0.12 -1.23 5.99 -26.68 -0.16 -1.39 16 26 C -0.12 -1.01 5.97 -26.72 -0.16 -1.17 16 27 C -0.07 -0.62 5.91 -28.01 -0.17 -0.79 16 28 C -0.24 -5.95 8.62 -38.47 -0.33 -6.28 16 29 H 0.28 6.11 8.29 -40.82 -0.34 5.77 16 30 H 0.10 2.25 8.06 -52.48 -0.42 1.82 16 31 H 0.12 2.50 8.06 -52.49 -0.42 2.07 16 32 H 0.41 6.58 6.82 -40.82 -0.28 6.31 16 33 H 0.15 1.66 6.52 -52.49 -0.34 1.31 16 34 H 0.40 2.37 9.06 45.56 0.41 2.78 16 35 H 0.11 1.76 5.91 -51.93 -0.31 1.45 16 36 H 0.08 1.16 8.11 -51.93 -0.42 0.74 16 37 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 41 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.13 3.11 6.20 -52.49 -0.33 2.78 16 LS Contribution 356.38 15.07 5.37 5.37 Total: -1.00 -31.30 356.38 -9.76 -41.05 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -4.19 Total: 13.93 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -6.06 Total: -6.13 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: 0.35 Total: -51.41 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.19 Total: -15.23 kcal Atomic # 14 Polarization: 17.44 SS G_CDS: -5.03 Total: 12.41 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.30 -9.76 -41.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934859721.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.937 kcal (2) G-P(sol) polarization free energy of solvation -31.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds