Wall clock time and date at job start Sat Apr 11 2020 05:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99734 * 2 1 4 4 H 1.48504 * 109.47302 * 239.99832 * 3 2 1 5 5 H 1.48499 * 109.47436 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47063 * 120.00133 * 3 2 1 7 7 C 1.38808 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00362 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99940 * 359.97438 * 7 2 1 10 10 C 1.51826 * 127.61033 * 359.67089 * 9 7 2 11 11 C 1.54391 * 102.86597 * 140.54207 * 10 9 7 12 12 H 1.09002 * 117.61671 * 243.59303 * 11 10 9 13 13 C 1.54285 * 106.22189 * 24.11779 * 11 10 9 14 14 H 1.09007 * 121.81562 * 221.52879 * 13 11 10 15 15 C 1.48144 * 127.83598 * 179.97438 * 9 7 2 16 16 C 1.52992 * 59.72383 * 113.48963 * 13 11 10 17 17 H 1.09003 * 117.44347 * 252.34940 * 16 13 11 18 18 N 1.46497 * 117.40891 * 107.66215 * 16 13 11 19 19 C 1.34773 * 120.00197 * 135.77194 * 18 16 13 20 20 O 1.21700 * 120.00136 * 0.02562 * 19 18 16 21 21 C 1.46673 * 120.00206 * 180.02562 * 19 18 16 22 22 C 1.36719 * 125.85994 * 180.02562 * 21 19 18 23 23 C 1.39908 * 106.91889 * 179.97438 * 22 21 19 24 24 C 1.36523 * 107.01750 * 0.02562 * 23 22 21 25 25 C 1.47737 * 125.76366 * 180.02562 * 24 23 22 26 26 C 1.40034 * 120.93557 * 359.71627 * 25 24 23 27 27 C 1.37946 * 118.98566 * 179.73135 * 26 25 24 28 28 N 1.31932 * 120.90925 * 0.55861 * 27 26 25 29 29 C 1.31938 * 122.07237 * 359.71526 * 28 27 26 30 30 C 1.37942 * 120.91158 * 359.97438 * 29 28 27 31 31 O 1.34392 * 108.46179 * 359.76782 * 24 23 22 32 32 H 0.96995 * 119.99945 * 359.97438 * 1 2 3 33 33 H 1.08992 * 112.26519 * 21.85572 * 10 9 7 34 34 H 1.08999 * 110.21712 * 258.26579 * 10 9 7 35 35 H 1.09002 * 110.40706 * 100.80382 * 15 9 7 36 36 H 1.09001 * 110.41178 * 338.37370 * 15 9 7 37 37 H 0.97005 * 120.00004 * 315.77445 * 18 16 13 38 38 H 1.08007 * 126.54232 * 359.97438 * 22 21 19 39 39 H 1.07994 * 126.49538 * 179.97438 * 23 22 21 40 40 H 1.08000 * 120.50288 * 0.02562 * 26 25 24 41 41 H 1.07993 * 119.54531 * 180.24983 * 27 26 25 42 42 H 1.08000 * 119.54165 * 179.97438 * 29 28 27 43 43 H 1.07995 * 120.50779 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1793 -2.5892 0.0069 11 6 -0.3713 -3.7836 -0.9523 12 1 -0.9350 -3.6100 -1.8689 13 6 0.9649 -4.5550 -0.9529 14 1 1.3965 -4.9560 -1.8700 15 6 1.8845 -3.7600 -0.0016 16 6 -0.2957 -5.1961 -0.3693 17 1 -0.3528 -5.2960 0.7147 18 7 -0.9194 -6.2773 -1.1363 19 6 -1.3385 -7.3939 -0.5086 20 8 -1.1993 -7.5039 0.6954 21 6 -1.9624 -8.4766 -1.2766 22 6 -2.4293 -9.6554 -0.7650 23 6 -2.9410 -10.3912 -1.8394 24 6 -2.7659 -9.6339 -2.9618 25 6 -3.1611 -10.0176 -4.3326 26 6 -3.7698 -11.2528 -4.5872 27 6 -4.1275 -11.5675 -5.8817 28 7 -3.8935 -10.7284 -6.8726 29 6 -3.3176 -9.5575 -6.6777 30 6 -2.9328 -9.1585 -5.4146 31 8 -2.1783 -8.4782 -2.6080 32 1 -0.4850 0.8400 0.0004 33 1 -0.7146 -1.7148 -0.3630 34 1 -0.5197 -2.8483 1.0094 35 1 1.8513 -4.1847 1.0018 36 1 2.9071 -3.7537 -0.3789 37 1 -1.0306 -6.1896 -2.0959 38 1 -2.4073 -9.9604 0.2708 39 1 -3.3889 -11.3726 -1.7903 40 1 -3.9606 -11.9463 -3.7816 41 1 -4.6012 -12.5160 -6.0877 42 1 -3.1451 -8.9024 -7.5189 43 1 -2.4622 -8.1984 -5.2626 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960265193.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:27 Heat of formation + Delta-G solvation = 88.970799 kcal Electronic energy + Delta-G solvation = -27174.029664 eV Core-core repulsion = 23188.286862 eV Total energy + Delta-G solvation = -3985.742803 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.12384 -40.45132 -39.75384 -38.22454 -34.65537 -34.17721 -33.31370 -32.70415 -31.74419 -30.43687 -29.39542 -27.10054 -25.95589 -24.93065 -24.18401 -22.82635 -21.78574 -21.45507 -20.62033 -20.29998 -19.25556 -18.75718 -17.59617 -16.96269 -16.81442 -16.62820 -16.36097 -16.22682 -15.17773 -14.77067 -14.68041 -14.51024 -14.29438 -14.25585 -13.78192 -13.49372 -13.41223 -13.29217 -13.13840 -12.76183 -12.26109 -12.13242 -11.59064 -11.40176 -11.14818 -11.08300 -10.85635 -10.48318 -10.37941 -10.34763 -10.24565 -10.10512 -10.05492 -9.72562 -9.70537 -9.25871 -8.84636 -8.75188 -8.41148 -6.95985 -5.69273 -3.13496 -0.05478 0.60069 1.10812 2.05617 2.07566 2.92827 2.94575 3.34210 3.38641 3.42629 3.43967 3.83607 3.94820 4.23140 4.27370 4.39492 4.43396 4.44483 4.57593 4.61011 5.00662 5.07069 5.09814 5.20291 5.24597 5.30354 5.31011 5.36383 5.52315 5.54125 5.58644 5.74994 5.85596 5.90873 6.01181 6.09317 6.19863 6.35703 6.50045 6.63101 6.72070 6.84146 7.27481 7.37170 7.43862 7.51048 7.75825 7.95748 8.23954 9.09223 9.73460 10.44112 11.34180 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018806 B = 0.001968 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.496782 B =14220.889604 C =15291.275049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.014 4.014 3 Si 0.919 3.081 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.215 4.215 8 H 0.080 0.920 9 N -0.601 5.601 10 C 0.156 3.844 11 C -0.168 4.168 12 H 0.103 0.897 13 C -0.183 4.183 14 H 0.103 0.897 15 C 0.160 3.840 16 C 0.088 3.912 17 H 0.134 0.866 18 N -0.683 5.683 19 C 0.602 3.398 20 O -0.514 6.514 21 C -0.051 4.051 22 C -0.123 4.123 23 C -0.183 4.183 24 C 0.040 3.960 25 C 0.027 3.973 26 C -0.151 4.151 27 C 0.105 3.895 28 N -0.483 5.483 29 C 0.106 3.894 30 C -0.155 4.155 31 O -0.154 6.154 32 H 0.254 0.746 33 H 0.138 0.862 34 H 0.019 0.981 35 H 0.028 0.972 36 H 0.052 0.948 37 H 0.404 0.596 38 H 0.167 0.833 39 H 0.162 0.838 40 H 0.143 0.857 41 H 0.163 0.837 42 H 0.163 0.837 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.904 -23.928 -10.148 27.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.209 4.209 3 Si 0.749 3.251 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.343 4.343 8 H 0.098 0.902 9 N -0.325 5.325 10 C 0.031 3.969 11 C -0.189 4.189 12 H 0.121 0.879 13 C -0.204 4.204 14 H 0.121 0.879 15 C 0.033 3.967 16 C -0.018 4.018 17 H 0.152 0.848 18 N -0.330 5.330 19 C 0.387 3.613 20 O -0.391 6.391 21 C -0.104 4.104 22 C -0.144 4.144 23 C -0.202 4.202 24 C -0.011 4.011 25 C 0.019 3.981 26 C -0.171 4.171 27 C -0.051 4.051 28 N -0.192 5.192 29 C -0.050 4.050 30 C -0.174 4.174 31 O -0.050 6.050 32 H 0.065 0.935 33 H 0.155 0.845 34 H 0.037 0.963 35 H 0.046 0.954 36 H 0.071 0.929 37 H 0.238 0.762 38 H 0.185 0.815 39 H 0.179 0.821 40 H 0.160 0.840 41 H 0.180 0.820 42 H 0.180 0.820 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.949 -23.665 -10.317 27.323 hybrid contribution 0.616 0.862 0.344 1.114 sum -8.333 -22.803 -9.974 26.247 Atomic orbital electron populations 1.69463 1.04973 1.24949 1.57829 1.24765 0.95718 0.97747 1.02693 0.86078 0.78340 0.82752 0.77891 1.21185 1.21529 1.21182 1.19067 0.90380 0.82133 1.42756 0.90250 1.46124 1.01295 0.99389 1.85661 1.22580 0.85464 0.95119 0.93709 1.24674 0.99717 0.91507 1.03041 0.87899 1.24406 0.91137 1.02460 1.02418 0.87858 1.21080 0.94813 0.85784 0.94984 1.22042 0.98039 0.85381 0.96299 0.84801 1.45324 1.59601 1.16535 1.11541 1.16472 0.78203 0.80395 0.86201 1.90907 1.56426 1.79258 1.12501 1.22369 1.08445 0.99301 0.80310 1.21906 0.98772 0.92379 1.01294 1.21801 1.05595 1.02049 0.90780 1.20480 1.01163 0.85644 0.93858 1.18079 0.97067 0.94555 0.88414 1.22116 0.99758 0.95906 0.99337 1.22730 0.95906 0.98760 0.87751 1.67671 1.11966 1.03715 1.35854 1.22782 0.93208 0.92828 0.96178 1.22375 1.00878 1.01035 0.93147 1.84056 1.61049 1.35788 1.24086 0.93478 0.84515 0.96283 0.95430 0.92921 0.76156 0.81502 0.82063 0.83956 0.81969 0.81994 0.83868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.41 10.12 55.49 0.56 -25.84 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.92 21.80 29.55 -169.99 -5.02 16.78 16 4 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.22 -5.92 10.42 -15.06 -0.16 -6.08 16 8 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 9 N -0.60 -15.25 3.46 -165.73 -0.57 -15.82 16 10 C 0.16 3.70 6.43 -0.29 0.00 3.70 16 11 C -0.17 -3.18 6.96 -89.22 -0.62 -3.80 16 12 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 13 C -0.18 -3.26 7.05 -89.24 -0.63 -3.89 16 14 H 0.10 1.67 8.14 -51.93 -0.42 1.24 16 15 C 0.16 3.34 7.05 -2.43 -0.02 3.33 16 16 C 0.09 1.47 5.97 -67.94 -0.41 1.06 16 17 H 0.13 2.47 7.40 -51.93 -0.38 2.09 16 18 N -0.68 -9.53 5.56 -55.12 -0.31 -9.83 16 19 C 0.60 8.76 7.79 -12.86 -0.10 8.66 16 20 O -0.51 -9.03 16.43 5.19 0.09 -8.95 16 21 C -0.05 -0.62 7.12 -36.73 -0.26 -0.88 16 22 C -0.12 -1.25 10.59 -39.51 -0.42 -1.67 16 23 C -0.18 -1.50 10.26 -39.58 -0.41 -1.90 16 24 C 0.04 0.37 7.05 -36.32 -0.26 0.12 16 25 C 0.03 0.22 5.91 -104.67 -0.62 -0.40 16 26 C -0.15 -0.92 9.64 -39.02 -0.38 -1.30 16 27 C 0.10 0.66 11.17 -17.62 -0.20 0.47 16 28 N -0.48 -4.03 10.34 -13.36 -0.14 -4.17 16 29 C 0.11 0.78 11.17 -17.61 -0.20 0.58 16 30 C -0.15 -1.18 9.82 -39.02 -0.38 -1.56 16 31 O -0.15 -1.68 10.23 3.87 0.04 -1.64 16 32 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 33 H 0.14 3.64 5.34 -51.93 -0.28 3.36 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.40 4.73 8.58 -40.82 -0.35 4.38 16 38 H 0.17 1.51 8.06 -52.48 -0.42 1.09 16 39 H 0.16 0.80 7.33 -52.49 -0.38 0.41 16 40 H 0.14 0.49 7.11 -52.49 -0.37 0.12 16 41 H 0.16 0.55 8.06 -52.49 -0.42 0.13 16 42 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 43 H 0.14 0.96 7.99 -52.49 -0.42 0.54 16 LS Contribution 371.70 15.07 5.60 5.60 Total: -1.00 -32.64 371.70 -10.01 -42.66 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -5.12 Total: 5.27 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -5.14 Total: -4.06 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: -0.46 Total: -55.67 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.12 Total: -10.58 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.64 -10.01 -42.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960265193.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.628 kcal (2) G-P(sol) polarization free energy of solvation -32.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds