Wall clock time and date at job start Sat Apr 11 2020 05:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99734 * 2 1 4 4 H 1.48504 * 109.47302 * 239.99832 * 3 2 1 5 5 H 1.48499 * 109.47436 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47063 * 120.00133 * 3 2 1 7 7 C 1.38808 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00362 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99940 * 359.97438 * 7 2 1 10 10 C 1.51826 * 127.61033 * 359.67089 * 9 7 2 11 11 C 1.54391 * 102.86597 * 140.54207 * 10 9 7 12 12 H 1.09002 * 117.61671 * 243.59303 * 11 10 9 13 13 C 1.54285 * 106.22189 * 24.11779 * 11 10 9 14 14 H 1.09007 * 121.81562 * 221.52879 * 13 11 10 15 15 C 1.48144 * 127.83598 * 179.97438 * 9 7 2 16 16 C 1.52992 * 59.72383 * 113.48963 * 13 11 10 17 17 H 1.09003 * 117.44347 * 252.34940 * 16 13 11 18 18 N 1.46497 * 117.40891 * 107.66215 * 16 13 11 19 19 C 1.34773 * 120.00197 * 135.77194 * 18 16 13 20 20 O 1.21700 * 120.00136 * 0.02562 * 19 18 16 21 21 C 1.46673 * 120.00206 * 180.02562 * 19 18 16 22 22 C 1.36719 * 125.85994 * 180.02562 * 21 19 18 23 23 C 1.39908 * 106.91889 * 179.97438 * 22 21 19 24 24 C 1.36523 * 107.01750 * 0.02562 * 23 22 21 25 25 C 1.47737 * 125.76366 * 180.02562 * 24 23 22 26 26 C 1.40034 * 120.93557 * 359.71627 * 25 24 23 27 27 C 1.37946 * 118.98566 * 179.73135 * 26 25 24 28 28 N 1.31932 * 120.90925 * 0.55861 * 27 26 25 29 29 C 1.31938 * 122.07237 * 359.71526 * 28 27 26 30 30 C 1.37942 * 120.91158 * 359.97438 * 29 28 27 31 31 O 1.34392 * 108.46179 * 359.76782 * 24 23 22 32 32 H 0.96995 * 119.99945 * 359.97438 * 1 2 3 33 33 H 1.08992 * 112.26519 * 21.85572 * 10 9 7 34 34 H 1.08999 * 110.21712 * 258.26579 * 10 9 7 35 35 H 1.09002 * 110.40706 * 100.80382 * 15 9 7 36 36 H 1.09001 * 110.41178 * 338.37370 * 15 9 7 37 37 H 0.97005 * 120.00004 * 315.77445 * 18 16 13 38 38 H 1.08007 * 126.54232 * 359.97438 * 22 21 19 39 39 H 1.07994 * 126.49538 * 179.97438 * 23 22 21 40 40 H 1.08000 * 120.50288 * 0.02562 * 26 25 24 41 41 H 1.07993 * 119.54531 * 180.24983 * 27 26 25 42 42 H 1.08000 * 119.54165 * 179.97438 * 29 28 27 43 43 H 1.07995 * 120.50779 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1793 -2.5892 0.0069 11 6 -0.3713 -3.7836 -0.9523 12 1 -0.9350 -3.6100 -1.8689 13 6 0.9649 -4.5550 -0.9529 14 1 1.3965 -4.9560 -1.8700 15 6 1.8845 -3.7600 -0.0016 16 6 -0.2957 -5.1961 -0.3693 17 1 -0.3528 -5.2960 0.7147 18 7 -0.9194 -6.2773 -1.1363 19 6 -1.3385 -7.3939 -0.5086 20 8 -1.1993 -7.5039 0.6954 21 6 -1.9624 -8.4766 -1.2766 22 6 -2.4293 -9.6554 -0.7650 23 6 -2.9410 -10.3912 -1.8394 24 6 -2.7659 -9.6339 -2.9618 25 6 -3.1611 -10.0176 -4.3326 26 6 -3.7698 -11.2528 -4.5872 27 6 -4.1275 -11.5675 -5.8817 28 7 -3.8935 -10.7284 -6.8726 29 6 -3.3176 -9.5575 -6.6777 30 6 -2.9328 -9.1585 -5.4146 31 8 -2.1783 -8.4782 -2.6080 32 1 -0.4850 0.8400 0.0004 33 1 -0.7146 -1.7148 -0.3630 34 1 -0.5197 -2.8483 1.0094 35 1 1.8513 -4.1847 1.0018 36 1 2.9071 -3.7537 -0.3789 37 1 -1.0306 -6.1896 -2.0959 38 1 -2.4073 -9.9604 0.2708 39 1 -3.3889 -11.3726 -1.7903 40 1 -3.9606 -11.9463 -3.7816 41 1 -4.6012 -12.5160 -6.0877 42 1 -3.1451 -8.9024 -7.5189 43 1 -2.4622 -8.1984 -5.2626 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960265193.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:26 Heat of formation + Delta-G solvation = 68.687959 kcal Electronic energy + Delta-G solvation = -27174.909194 eV Core-core repulsion = 23188.286862 eV Total energy + Delta-G solvation = -3986.622333 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.88270 -41.14727 -40.87764 -39.68673 -36.13480 -34.95411 -34.33052 -34.01846 -32.22907 -32.16784 -30.28281 -28.85065 -27.69555 -25.87212 -24.73080 -23.89575 -22.79075 -22.49401 -22.02488 -21.40363 -20.84260 -19.65870 -18.91331 -18.36674 -17.75730 -17.62999 -17.11125 -16.74698 -16.69794 -16.14452 -15.82460 -15.56787 -15.30334 -14.93759 -14.86170 -14.70651 -14.60991 -14.28489 -14.11839 -13.84389 -13.78415 -13.28137 -13.12047 -13.04089 -12.70459 -12.60557 -12.17472 -12.02951 -11.79622 -11.70802 -11.69716 -11.59988 -11.11062 -10.97489 -10.71804 -10.57313 -10.19523 -9.91990 -9.35987 -8.97699 -7.76485 -5.23904 -0.73008 0.12927 0.33270 1.24366 1.40430 1.48265 1.51411 1.57717 1.82842 1.89823 2.49366 2.80747 2.83623 3.12133 3.32341 3.49514 3.54293 3.58871 3.73826 3.79204 3.85715 3.92305 3.97105 4.10357 4.11166 4.33055 4.40624 4.43423 4.51404 4.58101 4.69088 4.74598 4.83284 4.86569 4.93771 4.96925 5.03496 5.23497 5.25909 5.29037 5.44271 5.45015 5.63218 5.65993 5.76366 6.24411 6.28035 6.84555 6.95067 7.01541 7.68700 8.43150 9.24946 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018806 B = 0.001968 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.496782 B =14220.889604 C =15291.275049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.070 4.070 3 Si 0.985 3.015 4 H -0.276 1.276 5 H -0.294 1.294 6 H -0.280 1.280 7 C -0.231 4.231 8 H 0.085 0.915 9 N -0.625 5.625 10 C 0.154 3.846 11 C -0.172 4.172 12 H 0.119 0.881 13 C -0.168 4.168 14 H 0.130 0.870 15 C 0.154 3.846 16 C 0.113 3.887 17 H 0.117 0.883 18 N -0.674 5.674 19 C 0.605 3.395 20 O -0.551 6.551 21 C -0.083 4.083 22 C -0.114 4.114 23 C -0.176 4.176 24 C 0.044 3.956 25 C 0.007 3.993 26 C -0.141 4.141 27 C 0.099 3.901 28 N -0.507 5.507 29 C 0.097 3.903 30 C -0.163 4.163 31 O -0.162 6.162 32 H 0.249 0.751 33 H 0.109 0.891 34 H 0.001 0.999 35 H 0.026 0.974 36 H 0.063 0.937 37 H 0.417 0.583 38 H 0.176 0.824 39 H 0.199 0.801 40 H 0.173 0.827 41 H 0.192 0.808 42 H 0.178 0.822 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.171 -26.495 -11.575 30.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.262 4.262 3 Si 0.813 3.187 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.206 1.206 7 C -0.360 4.360 8 H 0.103 0.897 9 N -0.350 5.350 10 C 0.029 3.971 11 C -0.193 4.193 12 H 0.137 0.863 13 C -0.189 4.189 14 H 0.148 0.852 15 C 0.028 3.972 16 C 0.007 3.993 17 H 0.135 0.865 18 N -0.322 5.322 19 C 0.393 3.607 20 O -0.431 6.431 21 C -0.135 4.135 22 C -0.134 4.134 23 C -0.195 4.195 24 C -0.008 4.008 25 C -0.001 4.001 26 C -0.160 4.160 27 C -0.057 4.057 28 N -0.217 5.217 29 C -0.059 4.059 30 C -0.183 4.183 31 O -0.058 6.058 32 H 0.059 0.941 33 H 0.127 0.873 34 H 0.019 0.981 35 H 0.044 0.956 36 H 0.081 0.919 37 H 0.254 0.746 38 H 0.193 0.807 39 H 0.216 0.784 40 H 0.191 0.809 41 H 0.208 0.792 42 H 0.195 0.805 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -9.208 -26.267 -11.774 30.222 hybrid contribution 0.636 1.508 0.749 1.799 sum -8.572 -24.760 -11.025 28.427 Atomic orbital electron populations 1.69728 1.06222 1.25134 1.58847 1.25616 0.96637 1.00942 1.03049 0.85054 0.77030 0.78514 0.78127 1.20205 1.21975 1.20625 1.19452 0.90974 0.83329 1.42201 0.89732 1.46418 1.02090 1.00500 1.85958 1.22316 0.84898 0.96120 0.93733 1.24336 1.01359 0.90925 1.02686 0.86334 1.24321 0.90199 1.01850 1.02563 0.85182 1.21207 0.95927 0.84297 0.95750 1.21570 0.97106 0.84963 0.95671 0.86541 1.45128 1.59358 1.15761 1.11982 1.16717 0.77429 0.80632 0.85945 1.90883 1.57987 1.80113 1.14143 1.21853 1.11201 0.99438 0.81012 1.22207 0.97230 0.91696 1.02279 1.22180 1.04940 1.03158 0.89266 1.20926 0.99970 0.85063 0.94823 1.18270 0.98359 0.95709 0.87804 1.22447 0.98063 0.95354 1.00147 1.23269 0.95432 0.99430 0.87540 1.67701 1.12555 1.04342 1.37059 1.23056 0.93148 0.93020 0.96659 1.22498 1.01072 1.01326 0.93431 1.84021 1.61618 1.36786 1.23423 0.94110 0.87341 0.98127 0.95578 0.91881 0.74596 0.80694 0.78413 0.80924 0.79160 0.80458 0.83645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.99 10.12 21.65 0.22 -55.77 16 2 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 3 Si 0.98 45.35 29.55 68.60 2.03 47.38 16 4 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.23 -12.88 10.42 84.03 0.88 -12.01 16 8 H 0.08 4.48 7.83 -2.91 -0.02 4.45 16 9 N -0.62 -32.34 3.46 -678.24 -2.35 -34.68 16 10 C 0.15 7.58 6.43 85.80 0.55 8.13 16 11 C -0.17 -6.51 6.96 -9.89 -0.07 -6.57 16 12 H 0.12 4.10 8.14 -2.39 -0.02 4.08 16 13 C -0.17 -5.82 7.05 -9.90 -0.07 -5.89 16 14 H 0.13 3.85 8.14 -2.38 -0.02 3.84 16 15 C 0.15 6.41 7.05 86.52 0.61 7.02 16 16 C 0.11 3.77 5.97 44.99 0.27 4.04 16 17 H 0.12 4.39 7.40 -2.39 -0.02 4.37 16 18 N -0.67 -18.26 5.56 -446.52 -2.48 -20.74 16 19 C 0.60 17.35 7.79 86.45 0.67 18.02 16 20 O -0.55 -19.51 16.43 -4.35 -0.07 -19.58 16 21 C -0.08 -1.90 7.12 24.12 0.17 -1.72 16 22 C -0.11 -2.09 10.59 22.32 0.24 -1.85 16 23 C -0.18 -2.32 10.26 22.27 0.23 -2.09 16 24 C 0.04 0.71 7.05 24.38 0.17 0.88 16 25 C 0.01 0.09 5.91 -19.89 -0.12 -0.02 16 26 C -0.14 -1.24 9.64 22.64 0.22 -1.02 16 27 C 0.10 0.97 11.17 84.61 0.95 1.92 16 28 N -0.51 -7.52 10.34 -196.17 -2.03 -9.54 16 29 C 0.10 1.28 11.17 84.61 0.95 2.23 16 30 C -0.16 -2.27 9.82 22.64 0.22 -2.04 16 31 O -0.16 -3.30 10.23 -9.06 -0.09 -3.39 16 32 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 33 H 0.11 6.04 5.34 -2.39 -0.01 6.03 16 34 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 35 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.42 9.19 8.58 -92.70 -0.79 8.39 16 38 H 0.18 2.85 8.06 -2.91 -0.02 2.83 16 39 H 0.20 0.98 7.33 -2.91 -0.02 0.96 16 40 H 0.17 0.36 7.11 -2.91 -0.02 0.34 16 41 H 0.19 0.60 8.06 -2.91 -0.02 0.58 16 42 H 0.18 1.54 8.06 -2.91 -0.02 1.52 16 43 H 0.15 1.83 7.99 -2.91 -0.02 1.80 16 Total: -1.00 -72.62 371.70 1.82 -70.80 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 0.27 Total: 20.02 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: 6.33 Total: 5.51 kcal Atomic # 7 Polarization: -114.10 SS G_CDS: -6.64 Total: -120.74 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.16 Total: -22.97 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -72.62 1.82 -70.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960265193.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.487 kcal (2) G-P(sol) polarization free energy of solvation -72.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds