Wall clock time and date at job start Sat Apr 11 2020 05:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42893 * 114.00148 * 2 1 4 4 C 1.50701 * 109.47322 * 179.97438 * 3 2 1 5 5 N 1.28643 * 124.71916 * 90.00158 * 4 3 2 6 6 C 1.33557 * 115.76796 * 179.97438 * 5 4 3 7 7 C 1.47272 * 123.14608 * 180.02562 * 6 5 4 8 8 O 1.21626 * 120.00247 * 179.97438 * 7 6 5 9 9 N 1.34778 * 119.99434 * 359.95588 * 7 6 5 10 10 C 1.46503 * 119.99653 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.46003 * 60.03412 * 10 9 7 12 12 C 1.53042 * 109.46231 * 300.07115 * 10 9 7 13 13 C 1.53192 * 109.30934 * 301.34436 * 12 10 9 14 14 N 1.46920 * 108.78092 * 305.36376 * 13 12 10 15 15 C 1.36940 * 120.63106 * 233.63660 * 14 13 12 16 16 H 1.08001 * 120.00384 * 27.66442 * 15 14 13 17 17 C 1.38814 * 119.99804 * 207.66387 * 15 14 13 18 18 N 1.31621 * 119.99938 * 17.35579 * 17 15 14 19 19 Si 1.86801 * 119.99888 * 197.36022 * 17 15 14 20 20 H 1.48496 * 109.47201 * 60.00256 * 19 17 15 21 21 H 1.48500 * 109.46901 * 179.97438 * 19 17 15 22 22 H 1.48492 * 109.47113 * 300.00005 * 19 17 15 23 23 C 1.46925 * 118.73783 * 53.60908 * 14 13 12 24 24 C 1.53045 * 109.45758 * 180.02562 * 10 9 7 25 25 C 1.35205 * 113.71950 * 0.02562 * 6 5 4 26 26 S 1.70766 * 124.72072 * 269.96129 * 4 3 2 27 27 H 1.09005 * 109.46671 * 60.00076 * 1 2 3 28 28 H 1.08995 * 109.47056 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46856 * 300.00236 * 1 2 3 30 30 H 1.09004 * 109.47425 * 60.00087 * 3 2 1 31 31 H 1.09003 * 109.47442 * 299.99911 * 3 2 1 32 32 H 0.97001 * 120.00218 * 0.02562 * 9 7 6 33 33 H 1.08998 * 109.47264 * 59.99447 * 11 10 9 34 34 H 1.09001 * 109.47092 * 179.97438 * 11 10 9 35 35 H 1.09001 * 109.47021 * 299.99984 * 11 10 9 36 36 H 1.09002 * 109.49508 * 61.29490 * 12 10 9 37 37 H 1.08999 * 109.49600 * 181.39330 * 12 10 9 38 38 H 1.09007 * 109.58017 * 185.57679 * 13 12 10 39 39 H 1.08998 * 109.58703 * 65.15946 * 13 12 10 40 40 H 0.96998 * 119.99820 * 179.97438 * 18 17 15 41 41 H 1.08998 * 109.59015 * 186.60839 * 23 14 13 42 42 H 1.08997 * 109.70335 * 66.25440 * 23 14 13 43 43 H 1.09002 * 109.49685 * 178.61146 * 24 10 9 44 44 H 1.09000 * 109.49842 * 298.66841 * 24 10 9 45 45 H 1.07998 * 125.59032 * 179.73987 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 7 4.2434 1.1284 -1.0564 6 6 5.5586 1.0248 -0.8481 7 6 6.5433 0.9473 -1.9404 8 8 7.7288 0.8544 -1.6851 9 7 6.1306 0.9790 -3.2231 10 6 7.1102 0.9025 -4.3098 11 6 7.8870 -0.4114 -4.2042 12 6 8.0826 2.0794 -4.2035 13 6 7.2978 3.3931 -4.2750 14 7 6.4837 3.3917 -5.4980 15 6 6.5661 4.4255 -6.3923 16 1 7.4791 4.9965 -6.4750 17 6 5.4762 4.7395 -7.1925 18 7 4.2778 4.2970 -6.8756 19 14 5.7103 5.7900 -8.7193 20 1 6.6527 5.1132 -9.6461 21 1 4.4018 5.9790 -9.3955 22 1 6.2626 7.1124 -8.3304 23 6 5.5799 2.2596 -5.7437 24 6 6.3839 0.9592 -5.6557 25 6 5.9016 0.9977 0.4595 26 16 4.4817 1.1108 1.4046 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.6887 1.8464 0.8900 31 1 1.6887 1.8464 -0.8900 32 1 5.1851 1.0532 -3.4267 33 1 7.1946 -1.2499 -4.2792 34 1 8.6155 -0.4687 -5.0129 35 1 8.4039 -0.4518 -3.2454 36 1 8.6164 2.0257 -3.2546 37 1 8.7966 2.0369 -5.0260 38 1 7.9925 4.2328 -4.2994 39 1 6.6484 3.4787 -3.4038 40 1 3.5162 4.5167 -7.4346 41 1 5.1409 2.3514 -6.7372 42 1 4.7887 2.2517 -4.9940 43 1 7.1139 0.9271 -6.4646 44 1 5.7089 0.1076 -5.7411 45 1 6.9074 0.9145 0.8438 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045650236.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:39 Heat of formation + Delta-G solvation = -9.132640 kcal Electronic energy + Delta-G solvation = -28037.640306 eV Core-core repulsion = 24183.087371 eV Total energy + Delta-G solvation = -3854.552936 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.62413 -39.33359 -38.03866 -37.09906 -34.36636 -32.09991 -31.59771 -30.69377 -29.85219 -28.36617 -27.37162 -26.33664 -25.07626 -23.98479 -22.25417 -21.77403 -20.78148 -19.85977 -18.95366 -18.39924 -16.95289 -16.87504 -16.29833 -16.10759 -15.87816 -15.16977 -14.81999 -14.77247 -14.29902 -14.02932 -13.78952 -13.66097 -13.35912 -13.07980 -13.01139 -12.94401 -12.49815 -12.36183 -12.06607 -11.80093 -11.71620 -11.58344 -11.26865 -11.16079 -10.88962 -10.67796 -10.34302 -10.25429 -10.12825 -9.97399 -9.84269 -9.82542 -9.80499 -9.58700 -9.17987 -9.09306 -8.55037 -8.40804 -6.61683 -5.75374 -3.16461 0.36165 1.05236 1.45419 1.92874 3.31830 3.40510 3.45844 3.47717 3.50364 3.66825 4.07855 4.53063 4.59891 4.88560 5.01963 5.04618 5.09112 5.14901 5.24006 5.35015 5.38999 5.41041 5.49208 5.57966 5.67143 5.79656 6.05666 6.10905 6.24840 6.36163 6.39588 6.46214 6.59729 6.70649 6.71616 6.76736 6.87371 7.01801 7.11944 7.32706 7.36387 7.65362 7.82348 7.99107 8.48714 8.53423 9.25301 9.89148 10.46669 11.33103 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011444 B = 0.003466 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.111715 B = 8076.513947 C = 9463.710912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.384 6.384 3 C 0.140 3.860 4 C 0.018 3.982 5 N -0.418 5.418 6 C 0.017 3.983 7 C 0.594 3.406 8 O -0.539 6.539 9 N -0.687 5.687 10 C 0.182 3.818 11 C -0.161 4.161 12 C -0.143 4.143 13 C 0.150 3.850 14 N -0.590 5.590 15 C -0.250 4.250 16 H 0.064 0.936 17 C 0.002 3.998 18 N -0.904 5.904 19 Si 0.901 3.099 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.283 1.283 23 C 0.172 3.828 24 C -0.145 4.145 25 C -0.224 4.224 26 S 0.221 5.779 27 H 0.048 0.952 28 H 0.090 0.910 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.410 0.590 33 H 0.048 0.952 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.050 0.950 39 H 0.014 0.986 40 H 0.253 0.747 41 H 0.089 0.911 42 H 0.017 0.983 43 H 0.072 0.928 44 H 0.054 0.946 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.695 -9.615 16.891 19.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C 0.061 3.939 4 C -0.261 4.261 5 N -0.135 5.135 6 C -0.119 4.119 7 C 0.377 3.623 8 O -0.418 6.418 9 N -0.337 5.337 10 C 0.097 3.903 11 C -0.219 4.219 12 C -0.182 4.182 13 C 0.024 3.976 14 N -0.313 5.313 15 C -0.380 4.380 16 H 0.082 0.918 17 C -0.196 4.196 18 N -0.548 5.548 19 Si 0.731 3.269 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.210 1.210 23 C 0.046 3.954 24 C -0.185 4.185 25 C -0.366 4.366 26 S 0.477 5.523 27 H 0.067 0.933 28 H 0.108 0.892 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.246 0.754 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.032 0.968 40 H 0.063 0.937 41 H 0.107 0.893 42 H 0.035 0.965 43 H 0.091 0.909 44 H 0.073 0.927 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -4.388 -9.757 17.459 20.477 hybrid contribution 0.005 0.775 -1.666 1.837 sum -4.383 -8.982 15.794 18.690 Atomic orbital electron populations 1.22805 0.79964 1.03250 1.00461 1.87943 1.20325 1.26374 1.95555 1.20791 0.84288 0.86032 1.02837 1.26557 1.00686 1.06970 0.91891 1.66886 1.03282 1.12102 1.31226 1.20620 0.89948 1.07475 0.93842 1.16963 0.86438 0.76925 0.82011 1.90722 1.15895 1.51293 1.83858 1.46011 1.11701 1.71517 1.04506 1.20349 0.88713 0.94988 0.86257 1.22229 1.00241 0.96314 1.03083 1.22401 0.97934 0.95944 1.01966 1.20828 0.93187 0.94176 0.89404 1.44027 1.47414 1.20177 1.19695 1.19166 0.96202 1.09213 1.13426 0.91794 1.25008 0.94732 0.99227 1.00672 1.70025 0.97839 1.48987 1.37977 0.86383 0.76697 0.80289 0.83489 1.21078 1.21689 1.20974 1.20734 0.90053 0.82796 1.01858 1.22513 1.00376 1.00979 0.94629 1.26656 1.05995 1.07054 0.96889 1.82682 0.94917 1.63468 1.11221 0.93349 0.89202 0.93772 0.90789 0.89508 0.75362 0.93291 0.92097 0.90910 0.90892 0.91698 0.93132 0.96818 0.93683 0.89260 0.96455 0.90926 0.92701 0.79188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.38 -4.11 10.69 -35.23 -0.38 -4.49 16 3 C 0.14 1.39 6.51 36.01 0.23 1.62 16 4 C 0.02 0.23 6.97 -13.61 -0.09 0.13 16 5 N -0.42 -6.44 10.12 -8.51 -0.09 -6.53 16 6 C 0.02 0.26 6.70 -84.52 -0.57 -0.30 16 7 C 0.59 10.54 7.22 -12.59 -0.09 10.45 16 8 O -0.54 -10.25 12.93 5.25 0.07 -10.18 16 9 N -0.69 -12.36 4.10 -48.67 -0.20 -12.56 16 10 C 0.18 3.30 0.66 -131.77 -0.09 3.22 16 11 C -0.16 -2.58 8.40 37.16 0.31 -2.27 16 12 C -0.14 -2.79 4.67 -26.61 -0.12 -2.92 16 13 C 0.15 3.40 6.26 -3.71 -0.02 3.38 16 14 N -0.59 -15.04 2.99 -172.35 -0.52 -15.55 16 15 C -0.25 -6.97 9.59 -15.06 -0.14 -7.12 16 16 H 0.06 1.76 7.89 -52.49 -0.41 1.35 16 17 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 18 N -0.90 -26.18 11.19 55.49 0.62 -25.56 16 19 Si 0.90 21.85 29.59 -169.99 -5.03 16.82 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 C 0.17 4.06 5.03 -3.73 -0.02 4.04 16 24 C -0.15 -2.79 4.95 -26.63 -0.13 -2.92 16 25 C -0.22 -2.80 10.62 29.65 0.31 -2.49 16 26 S 0.22 2.13 22.92 -107.50 -2.46 -0.33 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.41 7.52 6.79 -40.82 -0.28 7.24 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 1.24 6.16 -51.93 -0.32 0.92 16 36 H 0.07 1.43 6.20 -51.93 -0.32 1.11 16 37 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.05 1.14 7.93 -51.92 -0.41 0.73 16 39 H 0.01 0.33 7.74 -51.93 -0.40 -0.07 16 40 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.09 2.37 6.03 -51.93 -0.31 2.05 16 42 H 0.02 0.43 6.94 -51.93 -0.36 0.07 16 43 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 44 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.19 2.10 8.03 -52.49 -0.42 1.68 16 LS Contribution 372.76 15.07 5.62 5.62 Total: -1.00 -32.47 372.76 -8.36 -40.83 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -6.60 Total: 5.81 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: 0.61 Total: 6.13 kcal Atomic # 7 Polarization: -60.02 SS G_CDS: -0.18 Total: -60.20 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.31 Total: -14.67 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Atomic # 16 Polarization: 2.13 SS G_CDS: -2.46 Total: -0.33 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.47 -8.36 -40.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045650236.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.698 kcal (2) G-P(sol) polarization free energy of solvation -32.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds