Wall clock time and date at job start Sat Apr 11 2020 05:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39838 * 126.45783 * 2 1 4 4 C 1.35447 * 107.86646 * 179.97438 * 3 2 1 5 5 N 1.35537 * 108.87313 * 0.02562 * 4 3 2 6 6 H 0.97000 * 125.67610 * 180.26654 * 5 4 3 7 7 C 1.37655 * 108.64132 * 359.97438 * 5 4 3 8 8 C 1.46678 * 126.23232 * 179.97438 * 7 5 4 9 9 O 1.21692 * 120.00135 * 180.02562 * 8 7 5 10 10 N 1.34783 * 119.99704 * 0.02863 * 8 7 5 11 11 C 1.46506 * 119.99531 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.46866 * 180.02562 * 11 10 8 13 13 C 1.52998 * 109.47258 * 179.97438 * 12 11 10 14 14 H 1.08999 * 109.46913 * 305.00174 * 13 12 11 15 15 C 1.52995 * 109.47380 * 184.99750 * 13 12 11 16 16 N 1.46503 * 109.47282 * 64.99601 * 13 12 11 17 17 C 1.34771 * 120.00053 * 205.00369 * 16 13 12 18 18 O 1.21282 * 119.99917 * 359.97438 * 17 16 13 19 19 C 1.50701 * 119.99714 * 179.97438 * 17 16 13 20 20 S 1.81003 * 109.47058 * 179.97438 * 19 17 16 21 21 C 1.76196 * 100.00024 * 180.02562 * 20 19 17 22 22 H 1.07995 * 120.00224 * 359.97438 * 21 20 19 23 23 C 1.38806 * 119.99793 * 180.02562 * 21 20 19 24 24 N 1.31624 * 119.99922 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99754 * 180.02562 * 23 21 20 26 26 H 1.48489 * 109.47313 * 59.99809 * 25 23 21 27 27 H 1.48501 * 109.46968 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.46852 * 299.99315 * 25 23 21 29 29 H 1.09000 * 109.47255 * 270.02540 * 1 2 3 30 30 H 1.09003 * 109.47536 * 30.02514 * 1 2 3 31 31 H 1.08997 * 109.47436 * 150.02870 * 1 2 3 32 32 H 1.07996 * 126.06666 * 359.96126 * 3 2 1 33 33 H 1.07997 * 125.56701 * 180.02562 * 4 3 2 34 34 H 0.96997 * 120.00369 * 359.97438 * 10 8 7 35 35 H 1.09000 * 109.46895 * 299.99536 * 11 10 8 36 36 H 1.08997 * 109.46995 * 60.00108 * 11 10 8 37 37 H 1.09006 * 109.47115 * 299.99842 * 12 11 10 38 38 H 1.09003 * 109.47497 * 59.99804 * 12 11 10 39 39 H 1.08999 * 109.47444 * 300.00099 * 15 13 12 40 40 H 1.09004 * 109.47029 * 59.99918 * 15 13 12 41 41 H 1.09000 * 109.47670 * 179.97438 * 15 13 12 42 42 H 0.97003 * 119.99562 * 24.99947 * 16 13 12 43 43 H 1.08996 * 109.47637 * 299.99779 * 19 17 16 44 44 H 1.09000 * 109.47489 * 60.00029 * 19 17 16 45 45 H 0.97000 * 119.99754 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6217 0.6929 0.0006 5 7 3.6284 -0.6625 0.0004 6 1 4.4191 -1.2243 0.0043 7 6 2.3262 -1.1089 0.0002 8 6 1.8898 -2.5092 -0.0005 9 8 0.7026 -2.7766 -0.0011 10 7 2.8037 -3.4999 -0.0006 11 6 2.3678 -4.8986 -0.0020 12 6 3.5932 -5.8146 -0.0011 13 6 3.1381 -7.2754 -0.0019 14 1 2.4665 -7.4470 0.8393 15 6 4.3581 -8.1898 0.1246 16 7 2.4365 -7.5676 -1.2543 17 6 1.5321 -8.5656 -1.3031 18 8 1.2994 -9.2221 -0.3102 19 6 0.8100 -8.8659 -2.5913 20 16 -0.3288 -10.2495 -2.3363 21 6 -1.0166 -10.3816 -3.9531 22 1 -0.6945 -9.7082 -4.7336 23 6 -1.9731 -11.3504 -4.2233 24 7 -2.3659 -12.1708 -3.2719 25 14 -2.7018 -11.4909 -5.9376 26 1 -1.6193 -11.7734 -6.9140 27 1 -3.6932 -12.5962 -5.9650 28 1 -3.3719 -10.2153 -6.2966 29 1 -0.3634 0.0005 1.0277 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5134 32 1 2.0136 2.1548 -0.0006 33 1 4.4972 1.3253 0.0011 34 1 3.7500 -3.2868 -0.0005 35 1 1.7686 -5.0932 0.8875 36 1 1.7698 -5.0919 -0.8925 37 1 4.1929 -5.6201 -0.8903 38 1 4.1910 -5.6212 0.8897 39 1 5.0297 -8.0181 -0.7165 40 1 4.8801 -7.9724 1.0565 41 1 4.0339 -9.2305 0.1246 42 1 2.6229 -7.0428 -2.0485 43 1 0.2488 -7.9864 -2.9068 44 1 1.5350 -9.1297 -3.3613 45 1 -3.0341 -12.8481 -3.4609 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076332630.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:01 Heat of formation + Delta-G solvation = -44.527409 kcal Electronic energy + Delta-G solvation = -25751.848181 eV Core-core repulsion = 21895.760413 eV Total energy + Delta-G solvation = -3856.087768 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.71760 -39.68386 -39.16240 -36.65958 -34.81820 -32.86016 -32.40748 -31.89208 -30.49293 -29.12647 -28.46510 -27.10981 -25.46261 -24.15933 -22.30184 -21.63548 -20.98753 -20.35621 -19.55566 -18.97668 -17.81220 -16.63410 -16.39668 -16.06671 -15.94427 -15.71255 -14.93022 -14.80019 -14.76028 -14.26015 -14.11002 -14.04969 -13.70853 -13.50893 -13.35467 -13.20875 -12.92768 -12.88285 -12.63850 -12.55749 -12.18089 -11.95828 -11.88820 -11.79372 -11.56641 -11.12757 -11.02330 -11.01582 -10.74680 -10.22589 -9.80364 -9.50075 -9.38468 -9.16736 -9.04410 -8.93022 -8.53379 -8.21979 -6.47564 -6.19310 -3.89724 1.10123 2.35286 2.64051 2.76318 3.03568 3.07695 3.10036 3.25518 3.29221 3.32706 3.71359 4.22760 4.37085 4.45022 4.59087 4.64842 4.68702 4.84044 4.95966 5.15145 5.15682 5.17555 5.27567 5.30764 5.44900 5.51748 5.55880 5.58096 5.64971 5.66082 5.71075 5.84173 5.90638 5.96469 5.97888 6.12561 6.13613 6.16584 6.33447 6.58082 6.63587 6.92360 7.13514 7.61509 7.69265 7.87148 8.37291 8.61665 9.25876 10.88056 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013047 B = 0.002035 C = 0.001827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.628615 B =13757.693512 C =15325.483590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.071 4.071 3 C -0.212 4.212 4 C 0.025 3.975 5 N -0.543 5.543 6 H 0.415 0.585 7 C -0.063 4.063 8 C 0.586 3.414 9 O -0.518 6.518 10 N -0.734 5.734 11 C 0.118 3.882 12 C -0.137 4.137 13 C 0.147 3.853 14 H 0.092 0.908 15 C -0.163 4.163 16 N -0.736 5.736 17 C 0.534 3.466 18 O -0.516 6.516 19 C -0.154 4.154 20 S -0.059 6.059 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.868 5.868 25 Si 0.919 3.081 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.143 0.857 33 H 0.171 0.829 34 H 0.392 0.608 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.055 0.945 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.397 0.603 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.858 25.908 6.928 32.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.079 4.079 3 C -0.237 4.237 4 C -0.110 4.110 5 N -0.139 5.139 6 H 0.252 0.748 7 C -0.175 4.175 8 C 0.373 3.627 9 O -0.393 6.393 10 N -0.386 5.386 11 C -0.005 4.005 12 C -0.176 4.176 13 C 0.041 3.959 14 H 0.110 0.890 15 C -0.221 4.221 16 N -0.391 5.391 17 C 0.320 3.680 18 O -0.390 6.390 19 C -0.305 4.305 20 S 0.167 5.833 21 C -0.684 4.684 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.200 1.200 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.161 0.839 33 H 0.188 0.812 34 H 0.225 0.775 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.231 0.769 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 17.558 24.282 8.651 31.189 hybrid contribution 0.989 0.870 -2.659 2.968 sum 18.547 25.153 5.992 31.821 Atomic orbital electron populations 1.20380 0.89140 1.03128 1.02389 1.20022 0.96051 0.90775 1.01076 1.20842 0.91841 0.98917 1.12054 1.22010 0.99605 0.82911 1.06516 1.41923 1.07046 1.07289 1.57659 0.74844 1.20238 0.83737 0.93528 1.19968 1.17064 0.85937 0.82997 0.76658 1.90872 1.15906 1.83121 1.49417 1.45895 1.09057 1.06732 1.76889 1.21448 0.96907 0.78470 1.03688 1.22111 0.97564 0.94342 1.03543 1.20766 0.94295 0.92146 0.88670 0.88990 1.22172 0.97236 1.01150 1.01548 1.46129 1.43291 1.36778 1.12910 1.20300 0.78343 0.79011 0.90310 1.90700 1.63594 1.48291 1.36402 1.23540 1.03233 1.06513 0.97221 1.85379 1.45881 1.35301 1.16710 1.22826 1.27764 1.21495 0.96331 0.91001 1.24991 0.95690 0.94724 0.98184 1.70005 1.29706 1.18153 1.32418 0.86225 0.78749 0.77938 0.82600 1.19976 1.20816 1.19913 0.91393 0.91896 0.89979 0.83894 0.81167 0.77549 0.90780 0.90576 0.90697 0.89821 0.92564 0.91904 0.91363 0.76942 0.89212 0.89297 0.92141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.92 9.83 36.00 0.35 -0.57 16 2 C -0.07 -0.70 6.21 -104.16 -0.65 -1.34 16 3 C -0.21 -1.57 10.76 -39.98 -0.43 -2.00 16 4 C 0.03 0.13 11.89 -16.91 -0.20 -0.07 16 5 N -0.54 -2.96 5.99 -9.39 -0.06 -3.02 16 6 H 0.41 0.85 8.19 -40.82 -0.33 0.52 16 7 C -0.06 -0.59 7.06 -81.98 -0.58 -1.16 16 8 C 0.59 6.50 7.79 -12.85 -0.10 6.40 16 9 O -0.52 -7.89 14.80 5.20 0.08 -7.81 16 10 N -0.73 -5.66 5.55 -61.61 -0.34 -6.00 16 11 C 0.12 1.06 5.56 -4.04 -0.02 1.04 16 12 C -0.14 -0.90 4.87 -26.73 -0.13 -1.03 16 13 C 0.15 1.51 2.57 -67.93 -0.17 1.34 16 14 H 0.09 1.16 7.58 -51.93 -0.39 0.77 16 15 C -0.16 -1.57 9.48 37.16 0.35 -1.22 16 16 N -0.74 -9.20 4.53 -53.81 -0.24 -9.45 16 17 C 0.53 9.77 7.81 -10.99 -0.09 9.68 16 18 O -0.52 -11.51 15.53 5.56 0.09 -11.42 16 19 C -0.15 -3.13 6.16 36.01 0.22 -2.90 16 20 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 21 C -0.54 -15.44 9.50 30.94 0.29 -15.14 16 22 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 23 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 24 N -0.87 -26.41 13.22 55.49 0.73 -25.68 16 25 Si 0.92 21.67 29.55 -169.99 -5.02 16.64 16 26 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 27 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 28 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.98 6.48 -51.93 -0.34 0.65 16 32 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 33 H 0.17 0.29 8.06 -52.49 -0.42 -0.14 16 34 H 0.39 1.62 7.60 -40.82 -0.31 1.31 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.08 0.83 7.75 -51.93 -0.40 0.43 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.40 3.90 8.60 -40.82 -0.35 3.55 16 43 H 0.09 1.71 8.14 -51.92 -0.42 1.28 16 44 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 45 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 395.90 15.07 5.97 5.97 Total: -1.00 -38.53 395.90 -9.00 -47.54 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -6.75 Total: 2.03 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -1.24 Total: -4.96 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 0.09 Total: -44.15 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: 0.16 Total: -19.23 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -38.53 -9.00 -47.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076332630.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.008 kcal (2) G-P(sol) polarization free energy of solvation -38.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds