Wall clock time and date at job start Sat Apr 11 2020 05:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.32746 * 2 1 4 4 C 1.47102 * 109.32336 * 119.64661 * 2 1 3 5 5 C 1.52569 * 114.32078 * 183.06504 * 4 2 1 6 6 H 1.09000 * 109.48998 * 34.97868 * 5 4 2 7 7 N 1.46498 * 109.48648 * 155.02198 * 5 4 2 8 8 C 1.34780 * 120.00141 * 204.99501 * 7 5 4 9 9 O 1.21642 * 119.99757 * 0.02562 * 8 7 5 10 10 C 1.47185 * 119.99942 * 179.97438 * 8 7 5 11 11 C 1.35093 * 122.48226 * 180.02562 * 10 8 7 12 12 S 1.76186 * 108.21426 * 179.76269 * 11 10 8 13 13 C 1.76055 * 90.16054 * 0.32703 * 12 11 10 14 14 O 1.35497 * 125.18013 * 179.97438 * 13 12 11 15 15 N 1.29250 * 109.63628 * 359.66431 * 13 12 11 16 16 C 1.50877 * 109.35702 * 274.98530 * 5 4 2 17 17 C 1.53913 * 110.08442 * 91.89793 * 16 5 4 18 18 N 1.47611 * 112.15762 * 319.41260 * 17 16 5 19 19 C 1.36938 * 118.64096 * 137.87572 * 18 17 16 20 20 H 1.07995 * 119.99714 * 205.55570 * 19 18 17 21 21 C 1.38818 * 119.99989 * 25.56807 * 19 18 17 22 22 N 1.31609 * 120.00217 * 17.90242 * 21 19 18 23 23 Si 1.86803 * 119.99409 * 197.90879 * 21 19 18 24 24 H 1.48496 * 109.47281 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.46808 * 119.99740 * 23 21 19 26 26 H 1.48501 * 109.47014 * 239.99395 * 23 21 19 27 27 C 1.44576 * 122.71097 * 317.89892 * 18 17 16 28 28 H 1.08999 * 109.47511 * 300.35564 * 1 2 3 29 29 H 1.09005 * 109.46787 * 60.34916 * 1 2 3 30 30 H 1.08998 * 109.47615 * 180.34888 * 1 2 3 31 31 H 1.08998 * 109.46848 * 179.64996 * 3 2 1 32 32 H 1.09000 * 109.47161 * 299.64661 * 3 2 1 33 33 H 1.08998 * 109.47451 * 59.64712 * 3 2 1 34 34 H 1.09000 * 108.51226 * 61.81141 * 4 2 1 35 35 H 1.08995 * 108.38969 * 304.22741 * 4 2 1 36 36 H 0.97008 * 120.00036 * 24.99779 * 7 5 4 37 37 H 1.07998 * 125.89363 * 0.02562 * 11 10 8 38 38 H 0.96695 * 113.99438 * 269.69940 * 14 13 12 39 39 H 1.09000 * 109.36545 * 212.08036 * 16 5 4 40 40 H 1.08999 * 109.37007 * 331.70052 * 16 5 4 41 41 H 1.09001 * 108.93333 * 198.72783 * 17 16 5 42 42 H 1.09008 * 108.94852 * 80.10511 * 17 16 5 43 43 H 0.97001 * 120.00177 * 180.02562 * 22 21 19 44 44 H 1.08993 * 109.45305 * 330.66146 * 27 18 17 45 45 H 1.09007 * 109.42572 * 210.72909 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0364 1.4438 0.0000 4 6 2.0168 -0.6866 1.2064 5 6 3.5348 -0.6881 1.3593 6 1 3.9398 0.2485 0.9761 7 7 3.8833 -0.8283 2.7753 8 6 5.0665 -0.3674 3.2270 9 8 5.8449 0.1654 2.4589 10 6 5.4163 -0.5077 4.6498 11 6 6.5874 -0.0637 5.1562 12 16 6.6098 -0.4160 6.8823 13 6 5.0148 -1.1508 6.7581 14 8 4.3246 -1.6973 7.7882 15 7 4.5997 -1.0839 5.5359 16 6 4.1146 -1.8436 0.5814 17 6 4.4800 -1.3910 -0.8436 18 7 3.4624 -0.4902 -1.4198 19 6 3.8806 0.6080 -2.1228 20 1 3.2421 1.4757 -2.1989 21 6 5.1250 0.6059 -2.7380 22 7 5.7498 -0.5319 -2.9551 23 14 5.9128 2.2181 -3.2573 24 1 5.0129 3.3452 -2.9039 25 1 7.2118 2.3826 -2.5566 26 1 6.1398 2.2079 -4.7249 27 6 2.0426 -0.7193 -1.2720 28 1 -0.3634 0.5193 0.8867 29 1 -0.3633 0.5084 -0.8932 30 1 -0.3634 -1.0276 0.0063 31 1 3.1264 1.4465 0.0063 32 1 1.6770 1.9549 -0.8931 33 1 1.6667 1.9585 0.8868 34 1 1.6706 -1.7199 1.1800 35 1 1.5816 -0.1992 2.0788 36 1 3.2624 -1.2529 3.3879 37 1 7.3724 0.4267 4.5998 38 1 4.4946 -2.6401 7.9191 39 1 5.0101 -2.2061 1.0863 40 1 3.3811 -2.6480 0.5284 41 1 4.5754 -2.2705 -1.4804 42 1 5.4376 -0.8710 -0.8152 43 1 6.6195 -0.5334 -3.3846 44 1 1.8548 -1.7893 -1.1845 45 1 1.5196 -0.3292 -2.1452 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089470673.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:04 Heat of formation + Delta-G solvation = 0.455096 kcal Electronic energy + Delta-G solvation = -28496.212914 eV Core-core repulsion = 24642.075734 eV Total energy + Delta-G solvation = -3854.137180 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.58745 -39.47890 -38.40369 -37.26853 -34.74321 -34.32829 -31.48975 -30.54128 -30.10540 -27.51267 -26.64672 -25.76931 -25.36489 -23.78359 -22.85955 -21.55359 -20.02797 -19.67136 -19.39885 -18.34497 -17.75585 -16.70438 -16.52687 -16.21605 -15.67869 -15.01594 -14.73156 -14.54073 -14.49068 -13.98385 -13.83361 -13.59233 -13.29175 -13.19457 -12.78026 -12.31083 -12.22548 -12.18769 -11.94514 -11.53155 -11.30361 -11.21776 -11.00545 -10.93501 -10.71634 -10.54153 -10.31191 -10.14171 -10.07871 -9.92937 -9.81800 -9.71247 -9.64655 -9.53315 -9.41526 -9.18309 -8.65192 -8.26393 -6.57444 -5.68469 -3.09552 0.11458 0.61745 1.14396 1.72763 3.02617 3.41790 3.45865 3.51440 3.54565 3.55362 4.44806 4.60173 4.93724 5.02806 5.15093 5.28093 5.47446 5.49628 5.59333 5.60478 5.76347 6.01353 6.05483 6.18427 6.22445 6.29939 6.31688 6.40595 6.44527 6.54316 6.63649 6.64403 6.69091 6.81303 6.87620 6.91660 6.95699 7.05324 7.15179 7.38281 7.51128 7.79097 7.81990 7.95348 8.43124 8.56859 9.33653 10.01456 10.45576 11.39284 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013322 B = 0.003501 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.317239 B = 7995.328224 C = 9262.486338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.092 4.092 3 C -0.131 4.131 4 C -0.097 4.097 5 C 0.148 3.852 6 H 0.111 0.889 7 N -0.706 5.706 8 C 0.584 3.416 9 O -0.518 6.518 10 C 0.030 3.970 11 C -0.165 4.165 12 S 0.097 5.903 13 C 0.253 3.747 14 O -0.431 6.431 15 N -0.459 5.459 16 C -0.147 4.147 17 C 0.182 3.818 18 N -0.587 5.587 19 C -0.256 4.256 20 H 0.071 0.929 21 C 0.006 3.994 22 N -0.901 5.901 23 Si 0.894 3.106 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.293 1.293 27 C 0.169 3.831 28 H 0.043 0.957 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.082 0.918 32 H 0.047 0.953 33 H 0.026 0.974 34 H 0.054 0.946 35 H 0.050 0.950 36 H 0.400 0.600 37 H 0.197 0.803 38 H 0.408 0.592 39 H 0.055 0.945 40 H 0.046 0.954 41 H 0.025 0.975 42 H 0.078 0.922 43 H 0.251 0.749 44 H 0.031 0.969 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.013 -3.910 20.496 21.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.096 4.096 3 C -0.188 4.188 4 C -0.135 4.135 5 C 0.045 3.955 6 H 0.129 0.871 7 N -0.356 5.356 8 C 0.365 3.635 9 O -0.393 6.393 10 C -0.102 4.102 11 C -0.306 4.306 12 S 0.344 5.656 13 C -0.067 4.067 14 O -0.238 6.238 15 N -0.185 5.185 16 C -0.187 4.187 17 C 0.057 3.943 18 N -0.308 5.308 19 C -0.386 4.386 20 H 0.088 0.912 21 C -0.192 4.192 22 N -0.545 5.545 23 Si 0.724 3.276 24 H -0.203 1.203 25 H -0.216 1.216 26 H -0.220 1.220 27 C 0.040 3.960 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.101 0.899 32 H 0.066 0.934 33 H 0.045 0.955 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.235 0.765 37 H 0.214 0.786 38 H 0.267 0.733 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.043 0.957 42 H 0.096 0.904 43 H 0.061 0.939 44 H 0.049 0.951 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.370 -3.111 20.653 21.020 hybrid contribution 0.102 0.084 -0.580 0.595 sum -2.268 -3.027 20.073 20.426 Atomic orbital electron populations 1.21799 0.95648 1.00712 1.00935 1.20459 0.93907 0.97337 0.97907 1.21931 1.03545 0.94294 0.99015 1.20596 0.94049 1.00473 0.98365 1.20724 0.95010 1.02152 0.77569 0.87082 1.46156 1.18189 1.59588 1.11628 1.17022 0.82736 0.79364 0.84362 1.90922 1.49608 1.43290 1.55512 1.20218 0.91661 1.02985 0.95319 1.27193 1.02587 1.05207 0.95587 1.85302 1.17606 1.56620 1.06073 1.24999 0.91658 1.02057 0.87979 1.84868 1.65178 1.29886 1.43876 1.66738 1.32750 1.18404 1.00647 1.22445 0.99682 0.96770 0.99784 1.20939 0.93187 0.93595 0.86629 1.43658 0.99000 1.28362 1.59757 1.19305 1.01328 0.92554 1.25387 0.91181 1.24970 0.99724 0.96229 0.98308 1.70083 1.15658 1.23634 1.45170 0.86360 0.79617 0.84052 0.77589 1.20271 1.21589 1.21989 1.20716 0.86082 0.95724 0.93470 0.93756 0.92820 0.93405 0.89924 0.93419 0.95507 0.92760 0.93171 0.76515 0.78586 0.73342 0.92666 0.93529 0.95655 0.90386 0.93881 0.95072 0.93522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 8.37 37.16 0.31 -1.57 16 2 C -0.09 -1.58 0.72 -156.36 -0.11 -1.69 16 3 C -0.13 -2.43 6.77 37.16 0.25 -2.18 16 4 C -0.10 -1.55 3.40 -29.78 -0.10 -1.65 16 5 C 0.15 2.69 1.98 -69.22 -0.14 2.55 16 6 H 0.11 2.46 4.72 -51.93 -0.25 2.21 16 7 N -0.71 -11.24 4.93 -56.22 -0.28 -11.51 16 8 C 0.58 9.94 7.61 -12.63 -0.10 9.84 16 9 O -0.52 -10.81 16.33 5.24 0.09 -10.72 16 10 C 0.03 0.41 6.67 -84.60 -0.56 -0.16 16 11 C -0.16 -1.87 10.84 29.61 0.32 -1.55 16 12 S 0.10 0.81 23.42 -107.50 -2.52 -1.71 16 13 C 0.25 2.45 8.88 51.68 0.46 2.91 16 14 O -0.43 -3.06 13.64 -18.18 -0.25 -3.31 16 15 N -0.46 -5.65 10.01 -11.34 -0.11 -5.76 16 16 C -0.15 -2.87 5.38 -27.32 -0.15 -3.02 16 17 C 0.18 4.39 4.68 -2.96 -0.01 4.37 16 18 N -0.59 -14.10 1.86 -172.11 -0.32 -14.42 16 19 C -0.26 -6.83 7.63 -15.06 -0.11 -6.94 16 20 H 0.07 1.84 6.43 -52.49 -0.34 1.51 16 21 C 0.01 0.18 4.81 -17.43 -0.08 0.09 16 22 N -0.90 -26.34 11.10 55.49 0.62 -25.73 16 23 Si 0.89 22.25 29.59 -169.99 -5.03 17.22 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 27 C 0.17 3.41 4.70 -4.09 -0.02 3.39 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 1.81 4.45 -51.93 -0.23 1.57 16 32 H 0.05 0.90 7.49 -51.93 -0.39 0.51 16 33 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.05 0.81 7.36 -51.93 -0.38 0.43 16 35 H 0.05 0.74 8.00 -51.93 -0.42 0.33 16 36 H 0.40 5.51 8.08 -40.82 -0.33 5.18 16 37 H 0.20 2.07 8.01 -52.49 -0.42 1.65 16 38 H 0.41 0.69 9.06 45.56 0.41 1.10 16 39 H 0.05 1.09 7.85 -51.93 -0.41 0.68 16 40 H 0.05 0.84 7.32 -51.93 -0.38 0.46 16 41 H 0.03 0.66 8.05 -51.93 -0.42 0.24 16 42 H 0.08 2.17 6.33 -51.92 -0.33 1.84 16 43 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 44 H 0.03 0.61 8.07 -51.93 -0.42 0.19 16 45 H 0.05 0.97 7.95 -51.92 -0.41 0.56 16 LS Contribution 364.67 15.07 5.50 5.50 Total: -1.00 -32.40 364.67 -7.88 -40.28 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -5.53 Total: 5.76 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -0.05 Total: 4.40 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: -0.09 Total: -57.43 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.16 Total: -14.04 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.03 Total: 17.22 kcal Atomic # 16 Polarization: 0.81 SS G_CDS: -2.52 Total: -1.71 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.40 -7.88 -40.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089470673.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.739 kcal (2) G-P(sol) polarization free energy of solvation -32.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds