Wall clock time and date at job start Sat Apr 11 2020 05:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.49918 * 2 1 4 4 C 1.53042 * 109.49303 * 120.06566 * 2 1 3 5 5 C 1.53043 * 109.53451 * 181.31548 * 4 2 1 6 6 C 1.53190 * 109.31351 * 298.63083 * 5 4 2 7 7 H 1.09002 * 109.59034 * 294.70543 * 6 5 4 8 8 C 1.52999 * 109.58834 * 174.42203 * 6 5 4 9 9 N 1.46497 * 109.47422 * 179.91017 * 8 6 5 10 10 C 1.34772 * 120.00234 * 180.02562 * 9 8 6 11 11 O 1.21649 * 119.99902 * 0.02562 * 10 9 8 12 12 C 1.47184 * 120.00319 * 180.02562 * 10 9 8 13 13 C 1.35085 * 122.48699 * 179.97438 * 12 10 9 14 14 S 1.76191 * 108.21722 * 179.71519 * 13 12 10 15 15 C 1.76056 * 90.15724 * 0.26390 * 14 13 12 16 16 O 1.35493 * 125.17570 * 180.02562 * 15 14 13 17 17 N 1.29249 * 109.63992 * 359.97438 * 15 14 13 18 18 N 1.46923 * 108.77416 * 54.63526 * 6 5 4 19 19 C 1.36937 * 120.62866 * 126.41201 * 18 6 5 20 20 H 1.08005 * 120.00060 * 328.32351 * 19 18 6 21 21 C 1.38812 * 120.00248 * 148.32573 * 19 18 6 22 22 N 1.31617 * 119.99848 * 345.35550 * 21 19 18 23 23 Si 1.86797 * 120.00505 * 165.35033 * 21 19 18 24 24 H 1.48500 * 109.46987 * 59.99887 * 23 21 19 25 25 H 1.48497 * 109.47583 * 180.02562 * 23 21 19 26 26 H 1.48508 * 109.47192 * 300.00432 * 23 21 19 27 27 C 1.46921 * 118.74161 * 306.39146 * 18 6 5 28 28 H 1.09000 * 109.47570 * 299.94099 * 1 2 3 29 29 H 1.09004 * 109.46972 * 59.93548 * 1 2 3 30 30 H 1.08994 * 109.47628 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46726 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.46829 * 300.05909 * 3 2 1 33 33 H 1.08999 * 109.46764 * 60.06285 * 3 2 1 34 34 H 1.09005 * 109.46385 * 61.29434 * 4 2 1 35 35 H 1.09003 * 109.44768 * 301.32658 * 4 2 1 36 36 H 1.09003 * 109.49403 * 178.67964 * 5 4 2 37 37 H 1.09002 * 109.52528 * 58.60079 * 5 4 2 38 38 H 1.09007 * 109.46766 * 59.91278 * 8 6 5 39 39 H 1.09000 * 109.47284 * 299.91874 * 8 6 5 40 40 H 0.96999 * 119.99812 * 0.02562 * 9 8 6 41 41 H 1.08000 * 125.89601 * 359.97438 * 13 12 10 42 42 H 0.96693 * 114.00593 * 359.96949 * 16 15 14 43 43 H 0.97001 * 120.00431 * 179.97438 * 22 21 19 44 44 H 1.09000 * 109.58722 * 293.82104 * 27 18 6 45 45 H 1.09003 * 109.70341 * 173.46156 * 27 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0407 1.4422 0.0000 4 6 2.0407 -0.7228 1.2486 5 6 3.5707 -0.6947 1.2662 6 6 4.1052 -1.4268 0.0313 7 1 3.8396 -2.4825 0.0888 8 6 5.6272 -1.2836 -0.0313 9 7 6.1358 -1.9863 -1.2118 10 6 7.4580 -1.9961 -1.4726 11 8 8.2292 -1.4219 -0.7274 12 6 7.9689 -2.7017 -2.6590 13 6 9.2832 -2.7432 -2.9684 14 16 9.4719 -3.6854 -4.4452 15 6 7.7304 -3.9340 -4.5148 16 8 7.0799 -4.6365 -5.4736 17 7 7.1670 -3.3454 -3.5115 18 7 3.5045 -0.8297 -1.1692 19 6 4.2935 -0.3802 -2.1942 20 1 5.2750 0.0192 -1.9851 21 6 3.8320 -0.4377 -3.5021 22 7 2.7809 -1.1729 -3.7972 23 14 4.7024 0.5282 -4.8432 24 1 6.1141 0.0778 -4.9409 25 1 4.0184 0.2996 -6.1413 26 1 4.6664 1.9758 -4.5135 27 6 2.0413 -0.7243 -1.2493 28 1 -0.3634 0.5129 0.8905 29 1 -0.3633 0.5149 -0.8894 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1307 1.4416 -0.0005 32 1 1.6767 1.9565 -0.8894 33 1 1.6785 1.9559 0.8906 34 1 1.6965 -1.7570 1.2359 35 1 1.6580 -0.2236 2.1389 36 1 3.9332 -1.1891 2.1675 37 1 3.9163 0.3390 1.2543 38 1 6.0698 -1.7146 0.8668 39 1 5.8904 -0.2278 -0.0953 40 1 5.5209 -2.4445 -1.8058 41 1 10.0812 -2.2824 -2.4052 42 1 7.6611 -5.0102 -6.1501 43 1 2.4581 -1.2129 -4.7111 44 1 1.6052 -1.7221 -1.2975 45 1 1.7616 -0.1599 -2.1390 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089683222.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:19 Heat of formation + Delta-G solvation = -5.311426 kcal Electronic energy + Delta-G solvation = -28766.699186 eV Core-core repulsion = 24912.311950 eV Total energy + Delta-G solvation = -3854.387235 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -40.13623 -38.96116 -38.33212 -37.17425 -35.05656 -33.13347 -32.08457 -29.96616 -29.93345 -27.69797 -26.57109 -25.41361 -25.23914 -23.38311 -22.25250 -21.63289 -20.15207 -20.04886 -19.06549 -17.85977 -17.33140 -16.59464 -15.96376 -15.70207 -15.40914 -15.35250 -15.01311 -14.28566 -14.07375 -13.86462 -13.67209 -13.41614 -13.25054 -12.93942 -12.76385 -12.51635 -12.20815 -12.13377 -11.99915 -11.59792 -11.35632 -11.23694 -11.10539 -10.79667 -10.73841 -10.58630 -10.36648 -10.07616 -10.04243 -9.80309 -9.75238 -9.56291 -9.52684 -9.37148 -9.20443 -8.63973 -8.47126 -8.15363 -6.55365 -5.76244 -3.21349 0.61665 0.83623 1.37250 2.28335 2.91734 3.39575 3.44159 3.47156 3.75594 3.94494 4.51056 4.91115 5.24684 5.25333 5.37043 5.42011 5.50513 5.54697 5.65941 5.80007 5.88950 5.96759 6.07397 6.14550 6.20867 6.27277 6.36901 6.40796 6.49149 6.51467 6.52228 6.56281 6.58659 6.69572 6.94869 6.98299 7.05413 7.16910 7.17546 7.43007 7.66645 7.70549 7.87210 8.29769 8.48660 8.81000 9.24484 9.85871 10.44175 11.31063 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014077 B = 0.004153 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.586750 B = 6740.814826 C = 7714.292863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.095 4.095 3 C -0.124 4.124 4 C -0.095 4.095 5 C -0.129 4.129 6 C 0.160 3.840 7 H 0.031 0.969 8 C 0.132 3.868 9 N -0.667 5.667 10 C 0.581 3.419 11 O -0.558 6.558 12 C 0.062 3.938 13 C -0.186 4.186 14 S 0.019 5.981 15 C 0.293 3.707 16 O -0.415 6.415 17 N -0.453 5.453 18 N -0.583 5.583 19 C -0.253 4.253 20 H 0.066 0.934 21 C 0.019 3.981 22 N -0.893 5.893 23 Si 0.890 3.110 24 H -0.284 1.284 25 H -0.292 1.292 26 H -0.285 1.285 27 C 0.190 3.810 28 H 0.041 0.959 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.044 0.956 33 H 0.030 0.970 34 H 0.052 0.948 35 H 0.044 0.956 36 H 0.050 0.950 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.069 0.931 40 H 0.426 0.574 41 H 0.193 0.807 42 H 0.414 0.586 43 H 0.253 0.747 44 H 0.017 0.983 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.885 -5.291 1.547 8.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.097 4.097 3 C -0.181 4.181 4 C -0.133 4.133 5 C -0.169 4.169 6 C 0.053 3.947 7 H 0.049 0.951 8 C 0.008 3.992 9 N -0.317 5.317 10 C 0.363 3.637 11 O -0.438 6.438 12 C -0.068 4.068 13 C -0.327 4.327 14 S 0.265 5.735 15 C -0.028 4.028 16 O -0.214 6.214 17 N -0.182 5.182 18 N -0.306 5.306 19 C -0.382 4.382 20 H 0.084 0.916 21 C -0.181 4.181 22 N -0.536 5.536 23 Si 0.720 3.280 24 H -0.211 1.211 25 H -0.218 1.218 26 H -0.212 1.212 27 C 0.064 3.936 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.049 0.951 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.266 0.734 41 H 0.210 0.790 42 H 0.268 0.732 43 H 0.063 0.937 44 H 0.035 0.965 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.011 -5.179 1.557 8.854 hybrid contribution 0.226 0.524 -1.017 1.166 sum 7.237 -4.654 0.540 8.622 Atomic orbital electron populations 1.21758 0.96090 1.00811 1.00464 1.21246 0.93793 0.96401 0.98230 1.21697 1.02163 0.95089 0.99165 1.21405 0.95317 0.99620 0.96939 1.22004 0.96083 1.01274 0.97547 1.20729 0.89960 0.95271 0.88770 0.95111 1.21386 0.94122 0.97360 0.86289 1.45919 1.06398 1.51872 1.27489 1.16982 0.83298 0.80427 0.82986 1.90764 1.57292 1.46715 1.49053 1.20223 0.88732 1.00815 0.97079 1.26705 1.00451 1.06176 0.99346 1.85134 1.10156 1.52358 1.25828 1.25382 0.88480 0.96296 0.92641 1.84801 1.35090 1.65689 1.35777 1.66232 1.35769 1.12704 1.03541 1.43984 1.01673 1.69380 1.15604 1.19010 0.99956 1.34437 0.84802 0.91637 1.24979 0.98024 0.98094 0.97008 1.69983 1.26054 1.39077 1.18513 0.86564 0.79334 0.80270 0.81798 1.21080 1.21753 1.21164 1.20757 0.82687 0.96440 0.93717 0.94009 0.93079 0.93347 0.91553 0.93683 0.95105 0.92943 0.93685 0.93144 0.91602 0.92415 0.91263 0.73377 0.79039 0.73189 0.93669 0.96498 0.89924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 8.48 37.16 0.32 -1.82 16 2 C -0.09 -1.72 0.77 -154.39 -0.12 -1.83 16 3 C -0.12 -2.23 7.99 37.16 0.30 -1.93 16 4 C -0.10 -1.56 4.71 -26.69 -0.13 -1.69 16 5 C -0.13 -2.16 5.03 -26.61 -0.13 -2.29 16 6 C 0.16 3.11 3.00 -67.60 -0.20 2.91 16 7 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 8 C 0.13 2.54 4.43 -4.04 -0.02 2.53 16 9 N -0.67 -13.74 3.88 -61.46 -0.24 -13.98 16 10 C 0.58 11.78 7.79 -12.63 -0.10 11.68 16 11 O -0.56 -11.95 16.67 5.23 0.09 -11.87 16 12 C 0.06 1.13 6.67 -84.60 -0.56 0.56 16 13 C -0.19 -2.72 10.84 29.61 0.32 -2.40 16 14 S 0.02 0.22 23.38 -107.50 -2.51 -2.29 16 15 C 0.29 4.33 8.91 51.68 0.46 4.79 16 16 O -0.41 -5.07 13.64 -18.17 -0.25 -5.32 16 17 N -0.45 -8.52 10.01 -11.34 -0.11 -8.63 16 18 N -0.58 -13.24 2.41 -164.78 -0.40 -13.64 16 19 C -0.25 -6.38 6.98 -15.06 -0.11 -6.49 16 20 H 0.07 1.72 5.90 -52.48 -0.31 1.41 16 21 C 0.02 0.51 4.95 -17.43 -0.09 0.42 16 22 N -0.89 -24.80 11.32 55.49 0.63 -24.17 16 23 Si 0.89 22.03 29.58 -169.99 -5.03 17.00 16 24 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 C 0.19 4.23 3.94 -3.71 -0.01 4.22 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 1.30 5.97 -51.93 -0.31 0.99 16 32 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 1.13 6.34 -51.93 -0.33 0.80 16 38 H 0.06 1.01 8.14 -51.92 -0.42 0.58 16 39 H 0.07 1.43 7.38 -51.93 -0.38 1.04 16 40 H 0.43 9.59 6.92 -40.82 -0.28 9.30 16 41 H 0.19 2.46 8.01 -52.49 -0.42 2.04 16 42 H 0.41 2.10 9.03 45.56 0.41 2.51 16 43 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.08 2.11 6.27 -51.93 -0.33 1.78 16 LS Contribution 370.37 15.07 5.58 5.58 Total: -1.00 -31.23 370.37 -8.05 -39.28 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -5.73 Total: 9.37 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: -0.08 Total: 8.66 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: -0.12 Total: -60.42 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.16 Total: -17.18 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.00 kcal Atomic # 16 Polarization: 0.22 SS G_CDS: -2.51 Total: -2.29 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.23 -8.05 -39.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089683222.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.967 kcal (2) G-P(sol) polarization free energy of solvation -31.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds