Wall clock time and date at job start Sat Apr 11 2020 05:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.49918 * 2 1 4 4 C 1.53042 * 109.49303 * 120.06566 * 2 1 3 5 5 C 1.53043 * 109.53451 * 181.31548 * 4 2 1 6 6 C 1.53190 * 109.31351 * 298.63083 * 5 4 2 7 7 H 1.09002 * 109.59034 * 294.70543 * 6 5 4 8 8 C 1.52999 * 109.58834 * 174.42203 * 6 5 4 9 9 N 1.46497 * 109.47422 * 179.91017 * 8 6 5 10 10 C 1.34772 * 120.00234 * 180.02562 * 9 8 6 11 11 O 1.21649 * 119.99902 * 0.02562 * 10 9 8 12 12 C 1.47184 * 120.00319 * 180.02562 * 10 9 8 13 13 C 1.35085 * 122.48699 * 179.97438 * 12 10 9 14 14 S 1.76191 * 108.21722 * 179.71519 * 13 12 10 15 15 C 1.76056 * 90.15724 * 0.26390 * 14 13 12 16 16 O 1.35493 * 125.17570 * 180.02562 * 15 14 13 17 17 N 1.29249 * 109.63992 * 359.97438 * 15 14 13 18 18 N 1.46923 * 108.77416 * 54.63526 * 6 5 4 19 19 C 1.36937 * 120.62866 * 126.41201 * 18 6 5 20 20 H 1.08005 * 120.00060 * 328.32351 * 19 18 6 21 21 C 1.38812 * 120.00248 * 148.32573 * 19 18 6 22 22 N 1.31617 * 119.99848 * 345.35550 * 21 19 18 23 23 Si 1.86797 * 120.00505 * 165.35033 * 21 19 18 24 24 H 1.48500 * 109.46987 * 59.99887 * 23 21 19 25 25 H 1.48497 * 109.47583 * 180.02562 * 23 21 19 26 26 H 1.48508 * 109.47192 * 300.00432 * 23 21 19 27 27 C 1.46921 * 118.74161 * 306.39146 * 18 6 5 28 28 H 1.09000 * 109.47570 * 299.94099 * 1 2 3 29 29 H 1.09004 * 109.46972 * 59.93548 * 1 2 3 30 30 H 1.08994 * 109.47628 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46726 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.46829 * 300.05909 * 3 2 1 33 33 H 1.08999 * 109.46764 * 60.06285 * 3 2 1 34 34 H 1.09005 * 109.46385 * 61.29434 * 4 2 1 35 35 H 1.09003 * 109.44768 * 301.32658 * 4 2 1 36 36 H 1.09003 * 109.49403 * 178.67964 * 5 4 2 37 37 H 1.09002 * 109.52528 * 58.60079 * 5 4 2 38 38 H 1.09007 * 109.46766 * 59.91278 * 8 6 5 39 39 H 1.09000 * 109.47284 * 299.91874 * 8 6 5 40 40 H 0.96999 * 119.99812 * 0.02562 * 9 8 6 41 41 H 1.08000 * 125.89601 * 359.97438 * 13 12 10 42 42 H 0.96693 * 114.00593 * 359.96949 * 16 15 14 43 43 H 0.97001 * 120.00431 * 179.97438 * 22 21 19 44 44 H 1.09000 * 109.58722 * 293.82104 * 27 18 6 45 45 H 1.09003 * 109.70341 * 173.46156 * 27 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0407 1.4422 0.0000 4 6 2.0407 -0.7228 1.2486 5 6 3.5707 -0.6947 1.2662 6 6 4.1052 -1.4268 0.0313 7 1 3.8396 -2.4825 0.0888 8 6 5.6272 -1.2836 -0.0313 9 7 6.1358 -1.9863 -1.2118 10 6 7.4580 -1.9961 -1.4726 11 8 8.2292 -1.4219 -0.7274 12 6 7.9689 -2.7017 -2.6590 13 6 9.2832 -2.7432 -2.9684 14 16 9.4719 -3.6854 -4.4452 15 6 7.7304 -3.9340 -4.5148 16 8 7.0799 -4.6365 -5.4736 17 7 7.1670 -3.3454 -3.5115 18 7 3.5045 -0.8297 -1.1692 19 6 4.2935 -0.3802 -2.1942 20 1 5.2750 0.0192 -1.9851 21 6 3.8320 -0.4377 -3.5021 22 7 2.7809 -1.1729 -3.7972 23 14 4.7024 0.5282 -4.8432 24 1 6.1141 0.0778 -4.9409 25 1 4.0184 0.2996 -6.1413 26 1 4.6664 1.9758 -4.5135 27 6 2.0413 -0.7243 -1.2493 28 1 -0.3634 0.5129 0.8905 29 1 -0.3633 0.5149 -0.8894 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1307 1.4416 -0.0005 32 1 1.6767 1.9565 -0.8894 33 1 1.6785 1.9559 0.8906 34 1 1.6965 -1.7570 1.2359 35 1 1.6580 -0.2236 2.1389 36 1 3.9332 -1.1891 2.1675 37 1 3.9163 0.3390 1.2543 38 1 6.0698 -1.7146 0.8668 39 1 5.8904 -0.2278 -0.0953 40 1 5.5209 -2.4445 -1.8058 41 1 10.0812 -2.2824 -2.4052 42 1 7.6611 -5.0102 -6.1501 43 1 2.4581 -1.2129 -4.7111 44 1 1.6052 -1.7221 -1.2975 45 1 1.7616 -0.1599 -2.1390 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089683222.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:18 Heat of formation + Delta-G solvation = -29.336360 kcal Electronic energy + Delta-G solvation = -28767.740985 eV Core-core repulsion = 24912.311950 eV Total energy + Delta-G solvation = -3855.429035 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.46632 -40.39881 -39.71121 -38.33508 -36.63017 -34.97937 -33.65148 -31.73240 -31.18270 -29.14407 -27.99559 -27.29763 -26.52679 -24.82205 -23.90086 -22.97241 -21.69241 -21.21375 -20.47641 -19.45186 -18.65553 -18.11877 -17.47962 -17.22668 -16.72583 -16.61912 -16.34163 -16.07105 -15.67936 -15.34366 -15.30343 -14.95465 -14.71582 -14.51767 -13.99185 -13.87639 -13.75777 -13.43934 -13.14717 -13.08444 -13.01617 -12.81352 -12.72633 -12.50873 -12.49036 -12.25590 -12.11369 -11.86914 -11.64456 -11.27393 -11.22859 -10.93823 -10.85506 -10.73389 -10.58673 -10.46614 -9.95634 -9.56578 -8.47592 -7.79472 -5.23879 -0.53464 -0.21518 0.25849 0.97765 1.37464 1.39225 1.43760 1.96478 2.32388 2.48105 2.52884 3.36806 3.60825 3.70608 4.00852 4.05854 4.14833 4.16541 4.22459 4.33978 4.44899 4.53584 4.66171 4.72620 4.80718 4.88777 4.94515 4.97985 5.07323 5.12096 5.15661 5.17786 5.27588 5.41332 5.48444 5.54689 5.59085 5.65048 5.73536 5.80784 5.84132 5.90752 6.48073 6.55352 6.79751 7.21490 7.25325 7.93979 8.47179 9.24880 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014077 B = 0.004153 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.586750 B = 6740.814826 C = 7714.292863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.091 4.091 3 C -0.117 4.117 4 C -0.091 4.091 5 C -0.122 4.122 6 C 0.158 3.842 7 H 0.025 0.975 8 C 0.136 3.864 9 N -0.676 5.676 10 C 0.577 3.423 11 O -0.578 6.578 12 C 0.025 3.975 13 C -0.189 4.189 14 S 0.143 5.857 15 C 0.277 3.723 16 O -0.427 6.427 17 N -0.511 5.511 18 N -0.593 5.593 19 C -0.228 4.228 20 H 0.056 0.944 21 C -0.025 4.025 22 N -0.920 5.920 23 Si 0.931 3.069 24 H -0.291 1.291 25 H -0.295 1.295 26 H -0.285 1.285 27 C 0.199 3.801 28 H 0.070 0.930 29 H 0.040 0.960 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.028 0.972 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.053 0.947 40 H 0.416 0.584 41 H 0.208 0.792 42 H 0.440 0.560 43 H 0.244 0.756 44 H -0.010 1.010 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.172 -5.510 2.645 10.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.093 4.093 3 C -0.174 4.174 4 C -0.128 4.128 5 C -0.161 4.161 6 C 0.052 3.948 7 H 0.042 0.958 8 C 0.013 3.987 9 N -0.324 5.324 10 C 0.361 3.639 11 O -0.460 6.460 12 C -0.105 4.105 13 C -0.330 4.330 14 S 0.390 5.610 15 C -0.044 4.044 16 O -0.230 6.230 17 N -0.242 5.242 18 N -0.317 5.317 19 C -0.358 4.358 20 H 0.074 0.926 21 C -0.222 4.222 22 N -0.566 5.566 23 Si 0.762 3.238 24 H -0.218 1.218 25 H -0.222 1.222 26 H -0.211 1.211 27 C 0.074 3.926 28 H 0.089 0.911 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.071 0.929 40 H 0.253 0.747 41 H 0.224 0.776 42 H 0.300 0.700 43 H 0.054 0.946 44 H 0.008 0.992 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.331 -5.410 2.644 10.280 hybrid contribution -0.017 0.502 -1.411 1.497 sum 8.314 -4.908 1.233 9.733 Atomic orbital electron populations 1.21708 0.94242 1.01264 1.01404 1.21143 0.95297 0.96049 0.96798 1.21615 1.00850 0.95075 0.99862 1.21391 0.94877 0.99693 0.96887 1.21938 0.96396 1.00930 0.96874 1.20890 0.90106 0.95064 0.88701 0.95778 1.21399 0.94026 0.96444 0.86874 1.45983 1.06669 1.52090 1.27675 1.17363 0.82881 0.80054 0.83589 1.90722 1.57481 1.47733 1.50071 1.19897 0.90027 1.03148 0.97409 1.27145 0.99630 1.05297 1.00948 1.84679 1.05205 1.49163 1.21953 1.25538 0.90829 0.95781 0.92224 1.84771 1.36815 1.65359 1.36072 1.66103 1.38169 1.14607 1.05357 1.44143 1.01825 1.69691 1.16058 1.18988 0.99301 1.32266 0.85293 0.92638 1.25378 0.98939 0.99502 0.98384 1.70097 1.27497 1.41022 1.17944 0.85911 0.78114 0.79394 0.80402 1.21787 1.22165 1.21142 1.20533 0.82487 0.94917 0.94702 0.91136 0.94041 0.93197 0.93446 0.95314 0.92008 0.92966 0.90572 0.90076 0.91815 0.90325 0.92904 0.74656 0.77554 0.70029 0.94609 0.99164 0.93655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.90 8.48 71.98 0.61 -3.29 16 2 C -0.09 -3.21 0.77 -52.10 -0.04 -3.25 16 3 C -0.12 -4.06 7.99 71.98 0.57 -3.49 16 4 C -0.09 -2.74 4.71 30.62 0.14 -2.59 16 5 C -0.12 -3.81 5.03 30.67 0.15 -3.66 16 6 C 0.16 6.18 3.00 44.97 0.14 6.31 16 7 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 8 C 0.14 5.29 4.43 86.38 0.38 5.67 16 9 N -0.68 -28.81 3.88 -466.59 -1.81 -30.62 16 10 C 0.58 23.99 7.79 86.59 0.67 24.67 16 11 O -0.58 -25.07 16.67 -4.19 -0.07 -25.14 16 12 C 0.03 0.93 6.67 40.50 0.27 1.20 16 13 C -0.19 -5.24 10.84 67.09 0.73 -4.51 16 14 S 0.14 2.80 23.38 -56.49 -1.32 1.48 16 15 C 0.28 7.91 8.91 130.62 1.16 9.07 16 16 O -0.43 -10.00 13.64 -87.94 -1.20 -11.20 16 17 N -0.51 -19.55 10.01 -304.25 -3.05 -22.59 16 18 N -0.59 -27.71 2.41 -675.23 -1.63 -29.33 16 19 C -0.23 -11.93 6.98 84.03 0.59 -11.34 16 20 H 0.06 3.02 5.90 -2.91 -0.02 3.00 16 21 C -0.03 -1.40 4.95 84.86 0.42 -0.98 16 22 N -0.92 -53.54 11.32 21.65 0.25 -53.29 16 23 Si 0.93 46.80 29.58 68.60 2.03 48.82 16 24 H -0.29 -14.80 7.11 99.48 0.71 -14.09 16 25 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 26 H -0.28 -14.10 7.11 99.48 0.71 -13.39 16 27 C 0.20 9.17 3.94 86.37 0.34 9.51 16 28 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 30 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.05 1.82 5.97 -2.39 -0.01 1.80 16 32 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.08 1.89 8.14 -2.39 -0.02 1.88 16 36 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.06 2.05 6.34 -2.39 -0.02 2.04 16 38 H 0.08 2.70 8.14 -2.38 -0.02 2.68 16 39 H 0.05 2.22 7.38 -2.39 -0.02 2.20 16 40 H 0.42 19.63 6.92 -92.71 -0.64 18.99 16 41 H 0.21 4.91 8.01 -2.91 -0.02 4.89 16 42 H 0.44 3.51 9.03 -74.06 -0.67 2.84 16 43 H 0.24 14.18 8.31 -92.71 -0.77 13.41 16 44 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 45 H 0.04 2.42 6.27 -2.39 -0.01 2.40 16 Total: -1.00 -71.77 370.37 -0.93 -72.70 By element: Atomic # 1 Polarization: 26.12 SS G_CDS: -0.28 Total: 25.84 kcal Atomic # 6 Polarization: 17.19 SS G_CDS: 6.14 Total: 23.33 kcal Atomic # 7 Polarization: -129.60 SS G_CDS: -6.23 Total: -135.84 kcal Atomic # 8 Polarization: -35.07 SS G_CDS: -1.27 Total: -36.34 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.82 kcal Atomic # 16 Polarization: 2.80 SS G_CDS: -1.32 Total: 1.48 kcal Total: -71.77 -0.93 -72.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089683222.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.361 kcal (2) G-P(sol) polarization free energy of solvation -71.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds