Wall clock time and date at job start Sat Apr 11 2020 05:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86801 * 120.00227 * 2 1 4 4 H 1.48499 * 109.47422 * 270.00538 * 3 2 1 5 5 H 1.48502 * 109.46760 * 29.99860 * 3 2 1 6 6 H 1.48496 * 109.47215 * 149.99842 * 3 2 1 7 7 C 1.38798 * 120.00399 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99535 * 359.97438 * 7 2 1 9 9 S 1.76194 * 120.00494 * 180.02562 * 7 2 1 10 10 C 1.80997 * 100.00257 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47471 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99959 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00254 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99897 * 179.97438 * 13 11 10 15 15 H 1.08995 * 110.54907 * 40.23436 * 14 13 11 16 16 C 1.54838 * 110.74385 * 277.27530 * 14 13 11 17 17 C 1.57341 * 103.38300 * 241.02619 * 16 14 13 18 18 H 1.09005 * 115.50414 * 158.94900 * 17 16 14 19 19 C 1.55843 * 105.76344 * 288.89717 * 17 16 14 20 20 C 1.54834 * 103.52065 * 71.20107 * 19 17 16 21 21 C 1.55850 * 110.60848 * 163.10063 * 14 13 11 22 22 H 1.08997 * 115.58752 * 319.77346 * 21 14 13 23 23 N 1.50649 * 101.02762 * 85.67228 * 21 14 13 24 24 C 1.46894 * 111.00189 * 298.36516 * 23 21 14 25 25 H 1.09004 * 110.53933 * 58.87918 * 24 23 21 26 26 C 1.54633 * 110.48608 * 296.26819 * 24 23 21 27 27 C 1.54486 * 101.76073 * 266.11543 * 26 24 23 28 28 N 1.46763 * 105.47429 * 334.58182 * 27 26 24 29 29 C 1.34417 * 111.30020 * 17.28511 * 28 27 26 30 30 O 1.21281 * 124.94118 * 179.30894 * 29 28 27 31 31 H 0.96996 * 120.00035 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.47301 * 59.99937 * 10 9 7 33 33 H 1.09005 * 109.47235 * 300.00003 * 10 9 7 34 34 H 0.97006 * 120.00019 * 359.97438 * 13 11 10 35 35 H 1.08997 * 110.61636 * 359.93999 * 16 14 13 36 36 H 1.09006 * 110.60902 * 122.76756 * 16 14 13 37 37 H 1.09006 * 110.61166 * 189.71119 * 19 17 16 38 38 H 1.09005 * 110.61335 * 312.53437 * 19 17 16 39 39 H 1.08994 * 110.61053 * 241.49253 * 20 19 17 40 40 H 1.09003 * 110.60921 * 118.50323 * 20 19 17 41 41 H 1.09002 * 110.96794 * 148.00167 * 26 24 23 42 42 H 1.08995 * 110.99946 * 24.24833 * 26 24 23 43 43 H 1.09001 * 110.24210 * 215.58248 * 27 26 24 44 44 H 1.08997 * 110.24170 * 93.58678 * 27 26 24 45 45 H 0.97000 * 124.34556 * 197.01355 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4401 0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 1.4704 -2.1373 -0.0005 9 16 3.7723 -1.2020 0.0001 10 6 4.0867 -2.9845 -0.0001 11 6 5.5731 -3.2325 0.0010 12 8 6.3441 -2.2963 0.0015 13 7 6.0458 -4.4947 0.0005 14 6 7.4908 -4.7357 0.0011 15 1 7.9960 -4.0305 0.6609 16 6 8.0626 -4.6442 -1.4349 17 6 8.6570 -6.0799 -1.6824 18 1 8.7896 -6.3592 -2.7277 19 6 9.9241 -6.1748 -0.7800 20 6 9.3428 -6.2585 0.6526 21 6 7.8020 -6.2030 0.4244 22 1 7.1915 -6.5983 1.2362 23 7 7.6806 -6.9161 -0.8970 24 6 6.3220 -6.7889 -1.4409 25 1 6.0616 -5.7394 -1.5782 26 6 5.2997 -7.4829 -0.5112 27 6 5.1995 -8.8877 -1.1463 28 7 5.5661 -8.7072 -2.5559 29 6 6.2080 -7.5419 -2.7481 30 8 6.6316 -7.1500 -3.8148 31 1 -0.4850 0.8400 -0.0004 32 1 3.6441 -3.4314 -0.8904 33 1 3.6434 -3.4318 0.8896 34 1 5.4291 -5.2435 -0.0002 35 1 7.2708 -4.4203 -2.1498 36 1 8.8495 -3.8917 -1.4874 37 1 10.4962 -7.0724 -1.0151 38 1 10.5438 -5.2853 -0.8939 39 1 9.6729 -5.4094 1.2508 40 1 9.6267 -7.1976 1.1276 41 1 4.3370 -6.9724 -0.5398 42 1 5.6774 -7.5423 0.5095 43 1 4.1801 -9.2656 -1.0670 44 1 5.8950 -9.5718 -0.6601 45 1 5.3737 -9.3484 -3.2578 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110305476.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:38 Heat of formation + Delta-G solvation = -28.364300 kcal Electronic energy + Delta-G solvation = -28353.859235 eV Core-core repulsion = 24498.472352 eV Total energy + Delta-G solvation = -3855.386883 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.04605 -39.84788 -38.79659 -36.61998 -34.33256 -32.73104 -32.46599 -30.51763 -30.06027 -29.29180 -27.99937 -26.66515 -25.63449 -22.83730 -22.36658 -21.42874 -20.76359 -19.83383 -19.41867 -17.97604 -17.65246 -17.54392 -16.67367 -16.54671 -15.57519 -15.32580 -15.07730 -14.92387 -14.72438 -14.54610 -14.09589 -13.90882 -13.71661 -13.54660 -13.18211 -12.92396 -12.82121 -12.69370 -12.62875 -12.30482 -11.92826 -11.85907 -11.71757 -11.55053 -11.34235 -11.29356 -11.04226 -11.02617 -10.74418 -10.53498 -10.04760 -9.88113 -9.57704 -9.41796 -9.14077 -9.02573 -8.93591 -8.54091 -6.95392 -6.31689 -4.03826 2.24626 2.68904 2.86451 3.03382 3.22735 3.31779 3.48221 3.50985 3.58990 3.84018 4.04463 4.23709 4.29894 4.31492 4.45640 4.53896 4.68624 4.73859 4.78475 4.88750 4.99165 5.06289 5.07477 5.10766 5.13090 5.19554 5.26128 5.27009 5.38421 5.46832 5.48766 5.67264 5.68506 5.76300 5.89529 5.90491 5.92665 5.95485 6.16565 6.42886 6.49588 6.51952 6.70312 7.45347 7.91269 7.98628 8.38151 8.39105 9.14492 10.77537 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015462 B = 0.003157 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.407192 B = 8868.343062 C = 9853.232729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.097 3.903 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.523 4.523 8 H 0.088 0.912 9 S -0.138 6.138 10 C -0.126 4.126 11 C 0.529 3.471 12 O -0.512 6.512 13 N -0.736 5.736 14 C 0.115 3.885 15 H 0.099 0.901 16 C -0.162 4.162 17 C 0.048 3.952 18 H 0.121 0.879 19 C -0.114 4.114 20 C -0.109 4.109 21 C 0.040 3.960 22 H 0.122 0.878 23 N -0.473 5.473 24 C 0.006 3.994 25 H 0.107 0.893 26 C -0.143 4.143 27 C 0.112 3.888 28 N -0.728 5.728 29 C 0.537 3.463 30 O -0.529 6.529 31 H 0.271 0.729 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.397 0.603 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.098 0.902 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.085 -21.424 1.490 26.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.088 5.912 10 C -0.277 4.277 11 C 0.315 3.685 12 O -0.385 6.385 13 N -0.393 5.393 14 C 0.009 3.991 15 H 0.117 0.883 16 C -0.202 4.202 17 C -0.060 4.060 18 H 0.139 0.861 19 C -0.152 4.152 20 C -0.147 4.147 21 C -0.068 4.068 22 H 0.140 0.860 23 N -0.198 5.198 24 C -0.107 4.107 25 H 0.124 0.876 26 C -0.181 4.181 27 C -0.013 4.013 28 N -0.384 5.384 29 C 0.321 3.679 30 O -0.404 6.404 31 H 0.081 0.919 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.234 0.766 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.109 0.891 42 H 0.117 0.883 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 17.530 -20.098 1.025 26.688 hybrid contribution -1.653 -0.115 -0.383 1.701 sum 15.877 -20.213 0.642 25.711 Atomic orbital electron populations 1.69934 1.05916 1.27807 1.47979 1.24704 0.94442 0.98954 0.93124 0.86742 0.81882 0.83297 0.79979 1.19181 1.19892 1.15932 1.22309 0.88246 0.97543 1.58924 0.89395 1.84806 1.09312 0.99692 1.97412 1.23303 0.93925 1.04758 1.05715 1.20361 0.90646 0.82372 0.75082 1.90704 1.58707 1.42090 1.47041 1.46479 1.07114 1.08168 1.77555 1.22713 0.81468 0.97612 0.97332 0.88330 1.24003 1.01710 0.98072 0.96437 1.24858 0.92337 0.90222 0.98536 0.86093 1.22598 0.96191 1.02325 0.94118 1.22521 0.92321 1.02655 0.97236 1.24804 0.98363 0.90463 0.93213 0.86039 1.67745 1.02772 1.46677 1.02620 1.23071 0.92089 1.01507 0.94015 0.87598 1.22867 0.99211 0.95816 1.00177 1.21955 1.01094 0.97377 0.80860 1.46137 1.59860 1.21568 1.10800 1.20524 0.76238 0.81528 0.89593 1.90754 1.49238 1.70784 1.29576 0.91905 0.88636 0.88428 0.76599 0.90446 0.89952 0.90907 0.90770 0.90586 0.90410 0.89112 0.88332 0.90155 0.90570 0.75143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.40 13.97 55.49 0.78 -25.62 16 2 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 3 Si 0.86 21.70 27.74 -169.99 -4.71 16.98 16 4 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 7 C -0.52 -14.92 10.04 30.94 0.31 -14.61 16 8 H 0.09 2.61 8.03 -52.48 -0.42 2.19 16 9 S -0.14 -3.47 18.55 -107.50 -1.99 -5.47 16 10 C -0.13 -2.38 6.16 36.01 0.22 -2.16 16 11 C 0.53 9.08 7.82 -10.98 -0.09 9.00 16 12 O -0.51 -10.71 15.65 5.56 0.09 -10.62 16 13 N -0.74 -8.94 3.77 -51.40 -0.19 -9.13 16 14 C 0.12 1.24 2.49 -65.44 -0.16 1.08 16 15 H 0.10 1.19 7.51 -51.93 -0.39 0.80 16 16 C -0.16 -1.86 5.53 -23.40 -0.13 -1.99 16 17 C 0.05 0.47 4.62 -61.72 -0.28 0.19 16 18 H 0.12 1.37 7.45 -51.93 -0.39 0.99 16 19 C -0.11 -0.86 6.46 -24.25 -0.16 -1.02 16 20 C -0.11 -0.73 6.45 -24.24 -0.16 -0.89 16 21 C 0.04 0.31 4.01 -62.56 -0.25 0.06 16 22 H 0.12 0.75 6.85 -51.93 -0.36 0.39 16 23 N -0.47 -4.14 5.39 -196.87 -1.06 -5.21 16 24 C 0.01 0.05 1.67 -67.72 -0.11 -0.06 16 25 H 0.11 1.21 3.69 -51.93 -0.19 1.02 16 26 C -0.14 -0.88 5.19 -25.09 -0.13 -1.01 16 27 C 0.11 0.60 7.78 -3.12 -0.02 0.57 16 28 N -0.73 -5.81 6.24 -59.20 -0.37 -6.18 16 29 C 0.54 6.20 7.71 -10.86 -0.08 6.11 16 30 O -0.53 -8.24 17.27 5.56 0.10 -8.15 16 31 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 32 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 33 H 0.10 1.68 8.14 -51.91 -0.42 1.26 16 34 H 0.40 3.88 5.02 -40.82 -0.20 3.67 16 35 H 0.08 1.08 7.00 -51.93 -0.36 0.72 16 36 H 0.08 0.95 7.90 -51.93 -0.41 0.54 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.53 7.90 -51.93 -0.41 0.12 16 39 H 0.08 0.49 7.85 -51.93 -0.41 0.08 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.09 0.52 7.85 -51.93 -0.41 0.11 16 42 H 0.10 0.46 6.32 -51.93 -0.33 0.14 16 43 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.41 2.70 8.96 -40.82 -0.37 2.33 16 LS Contribution 360.43 15.07 5.43 5.43 Total: -1.00 -35.96 360.43 -9.42 -45.38 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -6.34 Total: 4.61 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -1.14 Total: -2.02 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: -0.85 Total: -46.15 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: 0.18 Total: -18.77 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.71 Total: 16.98 kcal Atomic # 16 Polarization: -3.47 SS G_CDS: -1.99 Total: -5.47 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.96 -9.42 -45.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110305476.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.017 kcal (2) G-P(sol) polarization free energy of solvation -35.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds