Wall clock time and date at job start Sat Apr 11 2020 05:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86801 * 120.00227 * 2 1 4 4 H 1.48499 * 109.47422 * 270.00538 * 3 2 1 5 5 H 1.48502 * 109.46760 * 29.99860 * 3 2 1 6 6 H 1.48496 * 109.47215 * 149.99842 * 3 2 1 7 7 C 1.38798 * 120.00399 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99535 * 359.97438 * 7 2 1 9 9 S 1.76194 * 120.00494 * 180.02562 * 7 2 1 10 10 C 1.80997 * 100.00257 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47471 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99959 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00254 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99897 * 179.97438 * 13 11 10 15 15 H 1.08995 * 110.54907 * 40.23436 * 14 13 11 16 16 C 1.54838 * 110.74385 * 277.27530 * 14 13 11 17 17 C 1.57341 * 103.38300 * 241.02619 * 16 14 13 18 18 H 1.09005 * 115.50414 * 158.94900 * 17 16 14 19 19 C 1.55843 * 105.76344 * 288.89717 * 17 16 14 20 20 C 1.54834 * 103.52065 * 71.20107 * 19 17 16 21 21 C 1.55850 * 110.60848 * 163.10063 * 14 13 11 22 22 H 1.08997 * 115.58752 * 319.77346 * 21 14 13 23 23 N 1.50649 * 101.02762 * 85.67228 * 21 14 13 24 24 C 1.46894 * 111.00189 * 298.36516 * 23 21 14 25 25 H 1.09004 * 110.53933 * 58.87918 * 24 23 21 26 26 C 1.54633 * 110.48608 * 296.26819 * 24 23 21 27 27 C 1.54486 * 101.76073 * 266.11543 * 26 24 23 28 28 N 1.46763 * 105.47429 * 334.58182 * 27 26 24 29 29 C 1.34417 * 111.30020 * 17.28511 * 28 27 26 30 30 O 1.21281 * 124.94118 * 179.30894 * 29 28 27 31 31 H 0.96996 * 120.00035 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.47301 * 59.99937 * 10 9 7 33 33 H 1.09005 * 109.47235 * 300.00003 * 10 9 7 34 34 H 0.97006 * 120.00019 * 359.97438 * 13 11 10 35 35 H 1.08997 * 110.61636 * 359.93999 * 16 14 13 36 36 H 1.09006 * 110.60902 * 122.76756 * 16 14 13 37 37 H 1.09006 * 110.61166 * 189.71119 * 19 17 16 38 38 H 1.09005 * 110.61335 * 312.53437 * 19 17 16 39 39 H 1.08994 * 110.61053 * 241.49253 * 20 19 17 40 40 H 1.09003 * 110.60921 * 118.50323 * 20 19 17 41 41 H 1.09002 * 110.96794 * 148.00167 * 26 24 23 42 42 H 1.08995 * 110.99946 * 24.24833 * 26 24 23 43 43 H 1.09001 * 110.24210 * 215.58248 * 27 26 24 44 44 H 1.08997 * 110.24170 * 93.58678 * 27 26 24 45 45 H 0.97000 * 124.34556 * 197.01355 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4401 0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 1.4704 -2.1373 -0.0005 9 16 3.7723 -1.2020 0.0001 10 6 4.0867 -2.9845 -0.0001 11 6 5.5731 -3.2325 0.0010 12 8 6.3441 -2.2963 0.0015 13 7 6.0458 -4.4947 0.0005 14 6 7.4908 -4.7357 0.0011 15 1 7.9960 -4.0305 0.6609 16 6 8.0626 -4.6442 -1.4349 17 6 8.6570 -6.0799 -1.6824 18 1 8.7896 -6.3592 -2.7277 19 6 9.9241 -6.1748 -0.7800 20 6 9.3428 -6.2585 0.6526 21 6 7.8020 -6.2030 0.4244 22 1 7.1915 -6.5983 1.2362 23 7 7.6806 -6.9161 -0.8970 24 6 6.3220 -6.7889 -1.4409 25 1 6.0616 -5.7394 -1.5782 26 6 5.2997 -7.4829 -0.5112 27 6 5.1995 -8.8877 -1.1463 28 7 5.5661 -8.7072 -2.5559 29 6 6.2080 -7.5419 -2.7481 30 8 6.6316 -7.1500 -3.8148 31 1 -0.4850 0.8400 -0.0004 32 1 3.6441 -3.4314 -0.8904 33 1 3.6434 -3.4318 0.8896 34 1 5.4291 -5.2435 -0.0002 35 1 7.2708 -4.4203 -2.1498 36 1 8.8495 -3.8917 -1.4874 37 1 10.4962 -7.0724 -1.0151 38 1 10.5438 -5.2853 -0.8939 39 1 9.6729 -5.4094 1.2508 40 1 9.6267 -7.1976 1.1276 41 1 4.3370 -6.9724 -0.5398 42 1 5.6774 -7.5423 0.5095 43 1 4.1801 -9.2656 -1.0670 44 1 5.8950 -9.5718 -0.6601 45 1 5.3737 -9.3484 -3.2578 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110305476.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:37 Heat of formation + Delta-G solvation = -57.607682 kcal Electronic energy + Delta-G solvation = -28355.127323 eV Core-core repulsion = 24498.472352 eV Total energy + Delta-G solvation = -3856.654971 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.85235 -40.76138 -40.00216 -37.44402 -35.48391 -34.68471 -33.42812 -31.67694 -30.92132 -29.95866 -29.06139 -27.85699 -27.36876 -23.55683 -23.15274 -22.26475 -21.76218 -20.70737 -20.26727 -19.79318 -18.49166 -18.33759 -17.91770 -17.64992 -17.11002 -16.60273 -16.28882 -16.08623 -15.81482 -15.45436 -15.26428 -14.98198 -14.81992 -14.77228 -14.47799 -14.00090 -13.91853 -13.59292 -13.36808 -13.34159 -13.10621 -12.99821 -12.91499 -12.70368 -12.50296 -12.36075 -12.29724 -11.98910 -11.89238 -11.77803 -11.38591 -11.18901 -10.94701 -10.90637 -10.55942 -10.23106 -10.09755 -9.75569 -9.01759 -8.53091 -6.23946 0.95604 1.30068 1.39293 1.44740 1.48722 1.53088 2.11726 2.23555 2.37810 2.68662 2.78168 2.85443 3.17087 3.41282 3.51771 3.59443 3.71231 3.81007 3.97748 3.98698 4.13536 4.17319 4.22881 4.29822 4.38676 4.40677 4.44888 4.50761 4.53662 4.67308 4.79452 4.88284 4.93638 5.05326 5.05865 5.12884 5.22124 5.24267 5.39050 5.53000 5.69320 5.73675 5.86923 5.98520 6.09992 6.31479 6.92344 7.09464 7.20735 8.59265 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015462 B = 0.003157 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.407192 B = 8868.343062 C = 9853.232729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.048 3.952 3 Si 0.912 3.088 4 H -0.265 1.265 5 H -0.258 1.258 6 H -0.236 1.236 7 C -0.529 4.529 8 H 0.064 0.936 9 S -0.174 6.174 10 C -0.114 4.114 11 C 0.534 3.466 12 O -0.554 6.554 13 N -0.710 5.710 14 C 0.113 3.887 15 H 0.091 0.909 16 C -0.162 4.162 17 C 0.048 3.952 18 H 0.099 0.901 19 C -0.110 4.110 20 C -0.104 4.104 21 C 0.053 3.947 22 H 0.152 0.848 23 N -0.464 5.464 24 C 0.004 3.996 25 H 0.083 0.917 26 C -0.141 4.141 27 C 0.110 3.890 28 N -0.717 5.717 29 C 0.523 3.477 30 O -0.584 6.584 31 H 0.277 0.723 32 H 0.107 0.893 33 H 0.120 0.880 34 H 0.411 0.589 35 H 0.045 0.955 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.123 0.877 43 H 0.105 0.895 44 H 0.093 0.907 45 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.070 -23.582 3.532 29.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.158 4.158 3 Si 0.734 3.266 4 H -0.190 1.190 5 H -0.182 1.182 6 H -0.160 1.160 7 C -0.677 4.677 8 H 0.082 0.918 9 S 0.053 5.947 10 C -0.265 4.265 11 C 0.319 3.681 12 O -0.432 6.432 13 N -0.366 5.366 14 C 0.007 3.993 15 H 0.109 0.891 16 C -0.202 4.202 17 C -0.061 4.061 18 H 0.117 0.883 19 C -0.148 4.148 20 C -0.142 4.142 21 C -0.055 4.055 22 H 0.169 0.831 23 N -0.189 5.189 24 C -0.108 4.108 25 H 0.100 0.900 26 C -0.179 4.179 27 C -0.013 4.013 28 N -0.372 5.372 29 C 0.308 3.692 30 O -0.463 6.463 31 H 0.087 0.913 32 H 0.126 0.874 33 H 0.138 0.862 34 H 0.251 0.749 35 H 0.063 0.937 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.117 0.883 41 H 0.116 0.884 42 H 0.141 0.859 43 H 0.124 0.876 44 H 0.111 0.889 45 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 18.487 -22.346 3.100 29.167 hybrid contribution -1.948 0.362 -1.084 2.259 sum 16.539 -21.984 2.015 27.584 Atomic orbital electron populations 1.70007 1.07253 1.29024 1.49110 1.25525 0.95236 1.02140 0.92890 0.85902 0.80784 0.79810 0.80099 1.19010 1.18198 1.15987 1.22456 0.90178 0.96740 1.58279 0.91784 1.84743 1.06533 1.05897 1.97575 1.23297 0.95801 0.99958 1.07422 1.20049 0.89478 0.83487 0.75051 1.90693 1.59238 1.43701 1.49545 1.46238 1.08317 1.06789 1.75298 1.22896 0.79900 0.99910 0.96609 0.89142 1.23936 1.00664 0.99255 0.96312 1.24757 0.94042 0.89023 0.98249 0.88323 1.22598 0.95070 1.02896 0.94244 1.22567 0.90988 1.04110 0.96536 1.24995 0.99825 0.87551 0.93179 0.83065 1.67770 1.02164 1.46092 1.02841 1.23041 0.93343 1.00278 0.94186 0.89982 1.23008 0.98437 0.95813 1.00637 1.22223 1.03038 0.97187 0.78877 1.46229 1.58094 1.20383 1.12454 1.20980 0.76095 0.82563 0.89572 1.90717 1.51730 1.72283 1.31594 0.91347 0.87437 0.86187 0.74865 0.93663 0.90613 0.90044 0.90583 0.89869 0.88316 0.88401 0.85887 0.87641 0.88893 0.74476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.48 13.97 21.65 0.30 -55.17 16 2 C 0.05 2.78 5.50 84.86 0.47 3.25 16 3 Si 0.91 44.93 27.74 68.60 1.90 46.83 16 4 H -0.27 -12.88 7.11 99.48 0.71 -12.18 16 5 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 6 H -0.24 -11.57 6.74 99.48 0.67 -10.90 16 7 C -0.53 -30.52 10.04 67.95 0.68 -29.84 16 8 H 0.06 3.87 8.03 -2.91 -0.02 3.85 16 9 S -0.17 -8.72 18.55 -56.49 -1.05 -9.77 16 10 C -0.11 -4.19 6.16 71.24 0.44 -3.75 16 11 C 0.53 17.90 7.82 87.66 0.69 18.59 16 12 O -0.55 -23.24 15.65 -3.04 -0.05 -23.29 16 13 N -0.71 -16.13 3.77 -434.93 -1.64 -17.77 16 14 C 0.11 2.26 2.49 46.60 0.12 2.38 16 15 H 0.09 2.05 7.51 -2.39 -0.02 2.04 16 16 C -0.16 -3.80 5.53 32.75 0.18 -3.61 16 17 C 0.05 0.92 4.62 46.69 0.22 1.14 16 18 H 0.10 2.38 7.45 -2.38 -0.02 2.37 16 19 C -0.11 -1.46 6.46 32.20 0.21 -1.25 16 20 C -0.10 -1.03 6.45 32.21 0.21 -0.82 16 21 C 0.05 0.64 4.01 46.15 0.18 0.82 16 22 H 0.15 1.02 6.85 -2.39 -0.02 1.00 16 23 N -0.46 -7.17 5.39 -776.78 -4.19 -11.36 16 24 C 0.00 0.07 1.67 44.91 0.08 0.15 16 25 H 0.08 1.84 3.69 -2.38 -0.01 1.83 16 26 C -0.14 -1.24 5.19 31.66 0.16 -1.07 16 27 C 0.11 0.77 7.78 86.83 0.68 1.44 16 28 N -0.72 -10.25 6.24 -459.79 -2.87 -13.12 16 29 C 0.52 11.95 7.71 87.90 0.68 12.62 16 30 O -0.58 -19.15 17.27 -3.03 -0.05 -19.20 16 31 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 32 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 33 H 0.12 3.89 8.14 -2.39 -0.02 3.87 16 34 H 0.41 6.99 5.02 -92.70 -0.47 6.52 16 35 H 0.04 1.35 7.00 -2.39 -0.02 1.33 16 36 H 0.08 1.83 7.90 -2.38 -0.02 1.81 16 37 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 38 H 0.08 0.98 7.90 -2.38 -0.02 0.96 16 39 H 0.08 0.77 7.85 -2.39 -0.02 0.76 16 40 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.10 0.76 7.85 -2.39 -0.02 0.74 16 42 H 0.12 0.50 6.32 -2.39 -0.02 0.48 16 43 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 44 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 45 H 0.42 4.92 8.96 -92.71 -0.83 4.09 16 Total: -1.00 -81.71 360.43 -2.95 -84.66 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -0.29 Total: 18.14 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: 4.98 Total: 0.04 kcal Atomic # 7 Polarization: -89.02 SS G_CDS: -8.39 Total: -97.41 kcal Atomic # 8 Polarization: -42.39 SS G_CDS: -0.10 Total: -42.49 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.90 Total: 46.83 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.05 Total: -9.77 kcal Total: -81.71 -2.95 -84.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110305476.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.053 kcal (2) G-P(sol) polarization free energy of solvation -81.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds