Wall clock time and date at job start Sat Apr 11 2020 05:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86795 * 120.00330 * 2 1 4 4 H 1.48495 * 109.47383 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47375 * 300.00381 * 3 2 1 6 6 H 1.48505 * 109.46965 * 60.00065 * 3 2 1 7 7 C 1.38801 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99873 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00096 * 359.97438 * 7 2 1 10 10 C 1.81002 * 99.99878 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47200 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99507 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00020 * 179.97438 * 11 10 9 14 14 C 1.46496 * 119.99544 * 180.02562 * 13 11 10 15 15 H 1.08994 * 115.52294 * 9.41332 * 14 13 11 16 16 C 1.53009 * 117.43931 * 223.99519 * 14 13 11 17 17 H 1.08992 * 119.52647 * 4.09275 * 16 14 13 18 18 C 1.57641 * 116.13839 * 161.44353 * 16 14 13 19 19 N 1.48557 * 104.60026 * 87.43386 * 18 16 14 20 20 C 1.46905 * 110.99910 * 200.32139 * 19 18 16 21 21 C 1.50694 * 109.47213 * 285.41784 * 20 19 18 22 22 O 1.21280 * 120.00422 * 0.02562 * 21 20 19 23 23 N 1.34778 * 119.99767 * 180.02562 * 21 20 19 24 24 C 1.47064 * 136.05709 * 359.62653 * 23 21 20 25 25 C 1.53242 * 88.08105 * 207.20548 * 24 23 21 26 26 C 1.47070 * 136.05753 * 180.02562 * 23 21 20 27 27 C 1.48561 * 104.21977 * 319.87864 * 19 18 16 28 28 C 1.53006 * 117.44260 * 154.84103 * 14 13 11 29 29 H 1.09005 * 119.52435 * 355.89891 * 28 14 13 30 30 H 0.97001 * 119.99701 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.46925 * 60.00038 * 10 9 7 32 32 H 1.09000 * 109.47556 * 300.00312 * 10 9 7 33 33 H 0.96994 * 119.99756 * 0.02562 * 13 11 10 34 34 H 1.09005 * 110.95156 * 328.37766 * 18 16 14 35 35 H 1.09005 * 109.96814 * 205.99408 * 18 16 14 36 36 H 1.09001 * 109.46681 * 45.42443 * 20 19 18 37 37 H 1.08999 * 109.46712 * 165.41678 * 20 19 18 38 38 H 1.08998 * 113.47294 * 321.93586 * 24 23 21 39 39 H 1.08993 * 113.46734 * 92.38228 * 24 23 21 40 40 H 1.09002 * 114.32663 * 220.46815 * 25 24 23 41 41 H 1.09002 * 114.19930 * 87.73046 * 25 24 23 42 42 H 1.09003 * 113.46525 * 267.62236 * 26 23 21 43 43 H 1.09003 * 113.46603 * 38.05368 * 26 23 21 44 44 H 1.09005 * 110.41076 * 280.70361 * 27 19 18 45 45 H 1.09000 * 110.40766 * 158.26206 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3028 0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8440 -6.3432 -0.0003 14 6 2.3302 -7.7151 -0.0003 15 1 1.2567 -7.8145 -0.1608 16 6 2.9981 -8.7181 0.9426 17 1 3.7768 -8.3776 1.6250 18 6 2.1741 -10.0227 1.2655 19 7 2.5316 -10.9700 0.1784 20 6 1.5206 -12.0279 0.0485 21 6 1.6681 -13.0061 1.1853 22 8 2.5301 -12.8383 2.0218 23 7 0.8420 -14.0674 1.2725 24 6 -0.2877 -14.5968 0.4938 25 6 -0.8099 -15.2377 1.7841 26 6 0.6691 -15.2020 2.1921 27 6 2.5773 -10.1244 -1.0422 28 6 3.2336 -8.8065 -0.5780 29 1 4.1878 -8.5316 -1.0277 30 1 -0.4850 0.8401 -0.0004 31 1 3.1244 -3.7314 0.8895 32 1 3.1245 -3.7314 -0.8905 33 1 3.8007 -6.1835 -0.0006 34 1 1.1032 -9.8196 1.2559 35 1 2.4756 -10.4234 2.2334 36 1 0.5252 -11.5847 0.0772 37 1 1.6593 -12.5485 -0.8991 38 1 -0.9444 -13.8214 0.0995 39 1 0.0091 -15.3233 -0.2625 40 1 -1.2140 -16.2418 1.6551 41 1 -1.4528 -14.5876 2.3775 42 1 1.2236 -16.0916 1.8930 43 1 0.8245 -14.9400 3.2388 44 1 1.5695 -9.9373 -1.4130 45 1 3.1842 -10.6008 -1.8121 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113891069.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:45 Heat of formation + Delta-G solvation = 20.999132 kcal Electronic energy + Delta-G solvation = -25673.482961 eV Core-core repulsion = 21820.236637 eV Total energy + Delta-G solvation = -3853.246324 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.86957 -40.21778 -38.84468 -37.94839 -35.21718 -32.75162 -32.44001 -30.74722 -29.21287 -28.57633 -27.53604 -26.36763 -25.50049 -23.40667 -22.06732 -21.11619 -20.61829 -20.37094 -19.33554 -17.87187 -17.50572 -16.90629 -16.79588 -16.49186 -16.18227 -15.47029 -15.28179 -14.90091 -14.81577 -14.32635 -14.13301 -13.99803 -13.43676 -13.33625 -13.17191 -13.11519 -12.99261 -12.80422 -12.63062 -12.36475 -12.16256 -12.07059 -11.81158 -11.58777 -11.31454 -11.08107 -11.03465 -10.93277 -10.77585 -10.29635 -10.04866 -9.81840 -9.49966 -9.18423 -9.08742 -8.79677 -8.70021 -8.25792 -6.51949 -6.23231 -3.93934 2.21614 2.35141 2.86569 2.88698 3.21038 3.25318 3.30568 3.51280 3.58984 3.67128 3.78856 4.03922 4.18923 4.37111 4.41984 4.51385 4.58245 4.63185 4.75855 4.80295 4.84550 4.86830 4.92921 4.96969 5.07599 5.09626 5.12272 5.17576 5.19806 5.25742 5.35840 5.51355 5.57371 5.64730 5.80654 5.85347 5.88242 5.97278 6.11088 6.38495 6.48508 6.59384 7.27627 7.58616 7.62153 7.84519 8.34159 8.52618 9.22396 10.84294 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.031098 B = 0.001615 C = 0.001577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.173843 B =17336.170482 C =17749.089852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.074 0.926 9 S -0.059 6.059 10 C -0.153 4.153 11 C 0.538 3.462 12 O -0.514 6.514 13 N -0.709 5.709 14 C 0.119 3.881 15 H 0.133 0.867 16 C -0.168 4.168 17 H 0.125 0.875 18 C 0.065 3.935 19 N -0.493 5.493 20 C 0.032 3.968 21 C 0.544 3.456 22 O -0.516 6.516 23 N -0.656 5.656 24 C 0.098 3.902 25 C -0.157 4.157 26 C 0.104 3.896 27 C 0.065 3.935 28 C -0.176 4.176 29 H 0.120 0.880 30 H 0.268 0.732 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.401 0.599 34 H 0.049 0.951 35 H 0.096 0.904 36 H 0.068 0.932 37 H 0.104 0.896 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.052 0.948 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.247 -32.015 -0.881 32.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.684 4.684 8 H 0.092 0.908 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.324 3.676 12 O -0.388 6.388 13 N -0.360 5.360 14 C 0.012 3.988 15 H 0.151 0.849 16 C -0.189 4.189 17 H 0.143 0.857 18 C -0.062 4.062 19 N -0.217 5.217 20 C -0.099 4.099 21 C 0.333 3.667 22 O -0.390 6.390 23 N -0.394 5.394 24 C -0.025 4.025 25 C -0.194 4.194 26 C -0.018 4.018 27 C -0.062 4.062 28 C -0.196 4.196 29 H 0.138 0.862 30 H 0.078 0.922 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.236 0.764 34 H 0.067 0.933 35 H 0.114 0.886 36 H 0.086 0.914 37 H 0.123 0.877 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.110 0.890 41 H 0.113 0.887 42 H 0.102 0.898 43 H 0.096 0.904 44 H 0.070 0.930 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.221 -32.181 -0.350 32.206 hybrid contribution 1.789 1.598 -0.265 2.414 sum 3.010 -30.583 -0.614 30.737 Atomic orbital electron populations 1.70028 1.05962 1.27374 1.46918 1.24996 0.95033 0.99056 0.94497 0.86104 0.79589 0.81823 0.77907 1.19604 1.20552 1.20555 1.22914 0.94975 0.91595 1.58904 0.90820 1.85401 1.04785 0.96342 1.96728 1.23536 1.06728 0.94975 1.05132 1.20358 0.86461 0.86133 0.74606 1.90695 1.15365 1.85480 1.47243 1.45367 1.09948 1.03875 1.76822 1.21688 0.97800 0.79000 1.00328 0.84939 1.24622 1.03526 0.97619 0.93096 0.85749 1.23256 0.96954 0.89519 0.96516 1.65313 1.42814 1.09638 1.03940 1.22043 0.95754 0.94142 0.97981 1.20108 0.79412 0.80510 0.86704 1.90727 1.32708 1.74121 1.41456 1.49731 1.34687 1.24340 1.30678 1.22965 0.86420 0.97432 0.95719 1.23343 0.96283 1.02448 0.97360 1.22910 0.94419 0.88517 0.95997 1.22616 0.99828 0.91083 0.92684 1.23780 1.02092 0.96445 0.97260 0.86186 0.92219 0.89021 0.89017 0.76439 0.93318 0.88582 0.91376 0.87748 0.90279 0.89538 0.89048 0.88653 0.89827 0.90409 0.93009 0.89122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.12 13.22 55.49 0.73 -25.38 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.40 29.55 -169.99 -5.02 16.37 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.54 -15.24 9.50 30.94 0.29 -14.95 16 8 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 9 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 10 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 11 C 0.54 10.01 7.85 -10.98 -0.09 9.93 16 12 O -0.51 -11.61 15.43 5.56 0.09 -11.52 16 13 N -0.71 -9.65 5.56 -53.80 -0.30 -9.95 16 14 C 0.12 1.48 5.93 -67.92 -0.40 1.08 16 15 H 0.13 1.88 7.40 -51.93 -0.38 1.49 16 16 C -0.17 -1.86 7.32 -87.49 -0.64 -2.50 16 17 H 0.12 1.33 8.14 -51.93 -0.42 0.91 16 18 C 0.07 0.73 5.79 -0.37 0.00 0.73 16 19 N -0.49 -5.09 4.98 -229.19 -1.14 -6.23 16 20 C 0.03 0.27 5.15 -4.98 -0.03 0.24 16 21 C 0.54 5.67 7.92 -10.99 -0.09 5.58 16 22 O -0.52 -7.59 16.00 5.56 0.09 -7.50 16 23 N -0.66 -4.83 3.69 -185.45 -0.68 -5.51 16 24 C 0.10 0.33 8.40 -8.64 -0.07 0.26 16 25 C -0.16 -0.43 8.48 -26.36 -0.22 -0.65 16 26 C 0.10 0.55 8.61 -8.52 -0.07 0.48 16 27 C 0.07 0.58 6.26 -2.18 -0.01 0.57 16 28 C -0.18 -1.75 6.97 -89.31 -0.62 -2.37 16 29 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 31 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 32 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 33 H 0.40 4.28 8.83 -40.82 -0.36 3.91 16 34 H 0.05 0.53 7.75 -51.93 -0.40 0.13 16 35 H 0.10 1.22 7.23 -51.93 -0.38 0.84 16 36 H 0.07 0.48 7.77 -51.93 -0.40 0.08 16 37 H 0.10 0.64 8.08 -51.93 -0.42 0.22 16 38 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 40 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 41 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.05 0.43 8.00 -51.93 -0.42 0.02 16 45 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 390.87 15.07 5.89 5.89 Total: -1.00 -37.66 390.87 -11.35 -49.01 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -6.96 Total: 1.09 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -1.83 Total: -2.45 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: -1.39 Total: -47.07 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: 0.17 Total: -19.02 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.66 -11.35 -49.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113891069.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.006 kcal (2) G-P(sol) polarization free energy of solvation -37.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds