Wall clock time and date at job start Sat Apr 11 2020 05:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 119.99836 * 2 1 4 4 H 1.48502 * 109.47099 * 270.00220 * 3 2 1 5 5 H 1.48497 * 109.47083 * 30.00115 * 3 2 1 6 6 H 1.48494 * 109.47314 * 150.00065 * 3 2 1 7 7 C 1.38797 * 120.00449 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99608 * 359.97438 * 7 2 1 9 9 S 1.76196 * 120.00358 * 179.97438 * 7 2 1 10 10 C 1.80997 * 100.00270 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47335 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99647 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00030 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99816 * 180.02562 * 13 11 10 15 15 H 1.08993 * 115.49524 * 9.61168 * 14 13 11 16 16 C 1.57018 * 118.25111 * 223.47048 * 14 13 11 17 17 H 1.08998 * 121.18711 * 3.75352 * 16 14 13 18 18 C 1.54377 * 118.21057 * 161.86611 * 16 14 13 19 19 N 1.48550 * 104.59714 * 86.26158 * 18 16 14 20 20 C 1.46900 * 111.00124 * 200.96017 * 19 18 16 21 21 H 1.09007 * 109.40232 * 55.58864 * 20 19 18 22 22 C 1.53070 * 109.40150 * 295.84745 * 20 19 18 23 23 C 1.53327 * 108.43780 * 190.97655 * 22 20 19 24 24 C 1.52924 * 108.68401 * 67.51216 * 23 22 20 25 25 N 1.45761 * 110.48630 * 309.25366 * 24 23 22 26 26 C 1.33351 * 124.10578 * 19.09843 * 25 24 23 27 27 O 1.21275 * 118.24639 * 177.75648 * 26 25 24 28 28 C 1.48561 * 104.22474 * 320.51503 * 19 18 16 29 29 C 1.53000 * 117.44177 * 155.00206 * 14 13 11 30 30 H 1.09002 * 119.52778 * 355.90387 * 29 14 13 31 31 H 0.96997 * 120.00429 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.46718 * 60.00188 * 10 9 7 33 33 H 1.08997 * 109.47312 * 300.00286 * 10 9 7 34 34 H 0.96998 * 120.00017 * 359.97438 * 13 11 10 35 35 H 1.09007 * 110.40921 * 327.47874 * 18 16 14 36 36 H 1.08995 * 110.41196 * 205.04396 * 18 16 14 37 37 H 1.08994 * 109.67405 * 310.70300 * 22 20 19 38 38 H 1.09003 * 109.67554 * 71.23735 * 22 20 19 39 39 H 1.08990 * 109.59570 * 307.75446 * 23 22 20 40 40 H 1.08998 * 109.60488 * 187.27072 * 23 22 20 41 41 H 1.08997 * 109.29835 * 188.94725 * 24 23 22 42 42 H 1.09001 * 109.13652 * 69.45591 * 24 23 22 43 43 H 0.96999 * 117.94507 * 199.08302 * 25 24 23 44 44 H 1.08997 * 110.41547 * 280.70846 * 28 19 18 45 45 H 1.08997 * 110.51339 * 158.30837 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7723 -1.2019 -0.0012 10 6 4.0867 -2.9844 -0.0009 11 6 5.5732 -3.2323 -0.0008 12 8 6.3441 -2.2960 -0.0005 13 7 6.0458 -4.4945 -0.0011 14 6 7.4909 -4.7355 -0.0005 15 1 8.1131 -3.8559 0.1645 16 6 8.0594 -5.8474 -0.9522 17 1 7.4098 -6.3860 -1.6422 18 6 9.5678 -5.8262 -1.2799 19 7 10.2025 -6.5841 -0.1711 20 6 11.6278 -6.2486 -0.0523 21 1 11.7372 -5.1708 0.0688 22 6 12.3621 -6.6931 -1.3196 23 6 13.8710 -6.5895 -1.0674 24 6 14.2662 -7.6351 -0.0238 25 7 13.3990 -7.5433 1.1441 26 6 12.2065 -6.9465 1.1450 27 8 11.5546 -6.9682 2.1674 28 6 9.4527 -6.1578 1.0385 29 6 7.9836 -6.0656 0.5730 30 1 7.2681 -6.7561 1.0194 31 1 -0.4850 0.8400 -0.0004 32 1 3.6434 -3.4316 -0.8907 33 1 3.6441 -3.4313 0.8892 34 1 5.4293 -5.2433 -0.0011 35 1 9.9380 -4.8011 -1.3005 36 1 9.7566 -6.3186 -2.2338 37 1 12.0994 -7.7248 -1.5532 38 1 12.0838 -6.0458 -2.1513 39 1 14.1120 -5.5934 -0.6965 40 1 14.4107 -6.7771 -1.9956 41 1 15.2993 -7.4676 0.2805 42 1 14.1762 -8.6291 -0.4621 43 1 13.7087 -7.9415 1.9726 44 1 9.8048 -5.1847 1.3808 45 1 9.5544 -6.8985 1.8316 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113897472.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:51 Heat of formation + Delta-G solvation = -26.097164 kcal Electronic energy + Delta-G solvation = -26341.237496 eV Core-core repulsion = 22485.948924 eV Total energy + Delta-G solvation = -3855.288573 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.24574 -39.88497 -38.71496 -36.97985 -35.47525 -33.33938 -32.44255 -31.77539 -29.66906 -28.81701 -28.57067 -25.63736 -25.13787 -23.39754 -22.66422 -21.13900 -20.55636 -20.25319 -19.61325 -17.87868 -17.78383 -17.13043 -16.55192 -16.41339 -16.38280 -15.33067 -15.08433 -15.01209 -14.97919 -14.59368 -14.20577 -14.16650 -13.90534 -13.71559 -13.25900 -13.10824 -12.80287 -12.77030 -12.56627 -12.53917 -12.22949 -11.86568 -11.75837 -11.56840 -11.36994 -11.26888 -11.01606 -10.91655 -10.65097 -10.27554 -9.93363 -9.86575 -9.60677 -9.55003 -9.00826 -8.84779 -8.70985 -8.51458 -6.92737 -6.29099 -4.01175 2.15302 2.64892 2.73154 2.78481 3.16947 3.32980 3.50305 3.51434 3.53663 3.65192 3.98312 4.11804 4.25074 4.31055 4.32885 4.43947 4.52585 4.62196 4.70165 4.72115 4.77159 4.90852 4.98745 5.04446 5.09938 5.13960 5.19611 5.22129 5.25732 5.33166 5.41238 5.57986 5.67240 5.74021 5.85531 5.88841 5.97478 6.00069 6.29640 6.38693 6.47857 6.56430 6.84705 7.53624 7.79567 7.93855 8.41111 8.41861 9.16926 10.80081 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.031926 B = 0.001811 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.819227 B =15455.643406 C =15614.014063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.089 0.911 9 S -0.140 6.140 10 C -0.124 4.124 11 C 0.536 3.464 12 O -0.516 6.516 13 N -0.705 5.705 14 C 0.123 3.877 15 H 0.134 0.866 16 C -0.180 4.180 17 H 0.121 0.879 18 C 0.065 3.935 19 N -0.496 5.496 20 C 0.060 3.940 21 H 0.077 0.923 22 C -0.117 4.117 23 C -0.138 4.138 24 C 0.109 3.891 25 N -0.719 5.719 26 C 0.530 3.470 27 O -0.542 6.542 28 C 0.070 3.930 29 C -0.169 4.169 30 H 0.118 0.882 31 H 0.271 0.729 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.403 0.597 35 H 0.051 0.949 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.401 0.599 44 H 0.048 0.952 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.837 -19.146 -3.222 35.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.107 0.893 9 S 0.086 5.914 10 C -0.274 4.274 11 C 0.323 3.677 12 O -0.390 6.390 13 N -0.356 5.356 14 C 0.015 3.985 15 H 0.152 0.848 16 C -0.201 4.201 17 H 0.139 0.861 18 C -0.062 4.062 19 N -0.221 5.221 20 C -0.052 4.052 21 H 0.094 0.906 22 C -0.155 4.155 23 C -0.176 4.176 24 C -0.015 4.015 25 N -0.372 5.372 26 C 0.315 3.685 27 O -0.419 6.419 28 C -0.057 4.057 29 C -0.190 4.190 30 H 0.136 0.864 31 H 0.081 0.919 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.237 0.763 35 H 0.069 0.931 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.108 0.892 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.236 0.764 44 H 0.067 0.933 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 30.494 -17.939 -2.973 35.504 hybrid contribution -0.850 -0.158 0.306 0.917 sum 29.643 -18.097 -2.668 34.833 Atomic orbital electron populations 1.69933 1.05906 1.27778 1.48003 1.24708 0.94454 0.98962 0.93168 0.86735 0.81903 0.83290 0.79930 1.19196 1.19921 1.15927 1.22314 0.88219 0.97574 1.58856 0.89340 1.84793 1.09351 0.99801 1.97439 1.23277 0.93527 1.04613 1.06021 1.20327 0.90695 0.81942 0.74727 1.90697 1.58761 1.42088 1.47412 1.45278 1.05513 1.08384 1.76401 1.22267 0.83004 0.93273 0.99977 0.84834 1.24565 0.96496 1.05259 0.93799 0.86108 1.22624 0.91642 0.96703 0.95269 1.65566 0.99540 1.52754 1.04263 1.21716 0.90680 0.98782 0.93975 0.90564 1.21725 0.93746 1.03664 0.96325 1.21898 0.96469 0.99640 0.99582 1.21415 0.93904 0.99765 0.86453 1.45430 1.18906 1.58369 1.14517 1.19864 0.80787 0.78092 0.89715 1.90739 1.57539 1.59900 1.33710 1.22787 0.89065 1.00865 0.93000 1.24021 0.98348 1.00268 0.96321 0.86361 0.91927 0.88291 0.88244 0.76286 0.93076 0.89153 0.89849 0.90295 0.90840 0.89183 0.90395 0.91399 0.76369 0.93348 0.87330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.57 13.97 55.49 0.78 -25.80 16 2 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 3 Si 0.86 21.82 27.74 -169.99 -4.71 17.11 16 4 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 7 C -0.52 -15.06 10.04 30.94 0.31 -14.74 16 8 H 0.09 2.65 8.03 -52.48 -0.42 2.23 16 9 S -0.14 -3.56 18.55 -107.50 -1.99 -5.55 16 10 C -0.12 -2.38 6.16 36.01 0.22 -2.16 16 11 C 0.54 9.56 7.85 -10.98 -0.09 9.48 16 12 O -0.52 -11.13 15.43 5.56 0.09 -11.05 16 13 N -0.70 -9.25 5.60 -51.70 -0.29 -9.54 16 14 C 0.12 1.49 6.15 -65.75 -0.40 1.09 16 15 H 0.13 1.88 7.40 -51.93 -0.38 1.49 16 16 C -0.18 -1.76 7.26 -87.06 -0.63 -2.39 16 17 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 18 C 0.06 0.56 5.41 -2.19 -0.01 0.55 16 19 N -0.50 -4.67 5.19 -223.67 -1.16 -5.83 16 20 C 0.06 0.48 1.99 -69.08 -0.14 0.34 16 21 H 0.08 0.61 7.97 -51.93 -0.41 0.20 16 22 C -0.12 -0.57 5.01 -26.53 -0.13 -0.70 16 23 C -0.14 -0.39 6.02 -26.60 -0.16 -0.55 16 24 C 0.11 0.31 7.17 -4.48 -0.03 0.28 16 25 N -0.72 -4.26 5.45 -61.38 -0.33 -4.59 16 26 C 0.53 4.90 7.44 -11.87 -0.09 4.81 16 27 O -0.54 -7.04 14.29 5.56 0.08 -6.96 16 28 C 0.07 0.77 4.82 -2.18 -0.01 0.76 16 29 C -0.17 -1.77 6.91 -89.23 -0.62 -2.38 16 30 H 0.12 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 32 H 0.10 1.76 8.14 -51.92 -0.42 1.33 16 33 H 0.10 1.78 8.14 -51.92 -0.42 1.36 16 34 H 0.40 4.11 8.83 -40.82 -0.36 3.75 16 35 H 0.05 0.45 7.90 -51.93 -0.41 0.03 16 36 H 0.09 0.64 7.96 -51.93 -0.41 0.23 16 37 H 0.08 0.45 8.13 -51.93 -0.42 0.03 16 38 H 0.08 0.33 7.65 -51.93 -0.40 -0.06 16 39 H 0.07 0.23 8.12 -51.93 -0.42 -0.19 16 40 H 0.09 0.11 8.14 -51.93 -0.42 -0.32 16 41 H 0.08 0.09 8.14 -51.93 -0.42 -0.34 16 42 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 43 H 0.40 2.06 8.80 -40.82 -0.36 1.70 16 44 H 0.05 0.58 7.96 -51.93 -0.41 0.16 16 45 H 0.11 1.37 6.37 -51.93 -0.33 1.04 16 LS Contribution 375.31 15.07 5.66 5.66 Total: -1.00 -36.04 375.31 -10.64 -46.67 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -6.86 Total: 2.81 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -1.88 Total: -2.93 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: -1.01 Total: -45.76 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: 0.17 Total: -18.00 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.71 Total: 17.11 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.04 -10.64 -46.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113897472.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.576 kcal (2) G-P(sol) polarization free energy of solvation -36.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds