Wall clock time and date at job start Sat Apr 11 2020 05:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 119.99836 * 2 1 4 4 H 1.48502 * 109.47099 * 270.00220 * 3 2 1 5 5 H 1.48497 * 109.47083 * 30.00115 * 3 2 1 6 6 H 1.48494 * 109.47314 * 150.00065 * 3 2 1 7 7 C 1.38797 * 120.00449 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99608 * 359.97438 * 7 2 1 9 9 S 1.76196 * 120.00358 * 179.97438 * 7 2 1 10 10 C 1.80997 * 100.00270 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47335 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99647 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00030 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99816 * 180.02562 * 13 11 10 15 15 H 1.08993 * 115.49524 * 9.61168 * 14 13 11 16 16 C 1.57018 * 118.25111 * 223.47048 * 14 13 11 17 17 H 1.08998 * 121.18711 * 3.75352 * 16 14 13 18 18 C 1.54377 * 118.21057 * 161.86611 * 16 14 13 19 19 N 1.48550 * 104.59714 * 86.26158 * 18 16 14 20 20 C 1.46900 * 111.00124 * 200.96017 * 19 18 16 21 21 H 1.09007 * 109.40232 * 55.58864 * 20 19 18 22 22 C 1.53070 * 109.40150 * 295.84745 * 20 19 18 23 23 C 1.53327 * 108.43780 * 190.97655 * 22 20 19 24 24 C 1.52924 * 108.68401 * 67.51216 * 23 22 20 25 25 N 1.45761 * 110.48630 * 309.25366 * 24 23 22 26 26 C 1.33351 * 124.10578 * 19.09843 * 25 24 23 27 27 O 1.21275 * 118.24639 * 177.75648 * 26 25 24 28 28 C 1.48561 * 104.22474 * 320.51503 * 19 18 16 29 29 C 1.53000 * 117.44177 * 155.00206 * 14 13 11 30 30 H 1.09002 * 119.52778 * 355.90387 * 29 14 13 31 31 H 0.96997 * 120.00429 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.46718 * 60.00188 * 10 9 7 33 33 H 1.08997 * 109.47312 * 300.00286 * 10 9 7 34 34 H 0.96998 * 120.00017 * 359.97438 * 13 11 10 35 35 H 1.09007 * 110.40921 * 327.47874 * 18 16 14 36 36 H 1.08995 * 110.41196 * 205.04396 * 18 16 14 37 37 H 1.08994 * 109.67405 * 310.70300 * 22 20 19 38 38 H 1.09003 * 109.67554 * 71.23735 * 22 20 19 39 39 H 1.08990 * 109.59570 * 307.75446 * 23 22 20 40 40 H 1.08998 * 109.60488 * 187.27072 * 23 22 20 41 41 H 1.08997 * 109.29835 * 188.94725 * 24 23 22 42 42 H 1.09001 * 109.13652 * 69.45591 * 24 23 22 43 43 H 0.96999 * 117.94507 * 199.08302 * 25 24 23 44 44 H 1.08997 * 110.41547 * 280.70846 * 28 19 18 45 45 H 1.08997 * 110.51339 * 158.30837 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7723 -1.2019 -0.0012 10 6 4.0867 -2.9844 -0.0009 11 6 5.5732 -3.2323 -0.0008 12 8 6.3441 -2.2960 -0.0005 13 7 6.0458 -4.4945 -0.0011 14 6 7.4909 -4.7355 -0.0005 15 1 8.1131 -3.8559 0.1645 16 6 8.0594 -5.8474 -0.9522 17 1 7.4098 -6.3860 -1.6422 18 6 9.5678 -5.8262 -1.2799 19 7 10.2025 -6.5841 -0.1711 20 6 11.6278 -6.2486 -0.0523 21 1 11.7372 -5.1708 0.0688 22 6 12.3621 -6.6931 -1.3196 23 6 13.8710 -6.5895 -1.0674 24 6 14.2662 -7.6351 -0.0238 25 7 13.3990 -7.5433 1.1441 26 6 12.2065 -6.9465 1.1450 27 8 11.5546 -6.9682 2.1674 28 6 9.4527 -6.1578 1.0385 29 6 7.9836 -6.0656 0.5730 30 1 7.2681 -6.7561 1.0194 31 1 -0.4850 0.8400 -0.0004 32 1 3.6434 -3.4316 -0.8907 33 1 3.6441 -3.4313 0.8892 34 1 5.4293 -5.2433 -0.0011 35 1 9.9380 -4.8011 -1.3005 36 1 9.7566 -6.3186 -2.2338 37 1 12.0994 -7.7248 -1.5532 38 1 12.0838 -6.0458 -2.1513 39 1 14.1120 -5.5934 -0.6965 40 1 14.4107 -6.7771 -1.9956 41 1 15.2993 -7.4676 0.2805 42 1 14.1762 -8.6291 -0.4621 43 1 13.7087 -7.9415 1.9726 44 1 9.8048 -5.1847 1.3808 45 1 9.5544 -6.8985 1.8316 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113897472.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:51 Heat of formation + Delta-G solvation = -55.032752 kcal Electronic energy + Delta-G solvation = -26342.492237 eV Core-core repulsion = 22485.948924 eV Total energy + Delta-G solvation = -3856.543314 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.93722 -40.91611 -39.83660 -37.54472 -36.36763 -34.68093 -34.32000 -32.46338 -30.85242 -29.61548 -29.39038 -27.86318 -25.74093 -24.07323 -23.26029 -22.04932 -21.86622 -21.05950 -20.12237 -19.85188 -18.33854 -18.11922 -17.90336 -17.23519 -17.12724 -17.07245 -16.48386 -16.01977 -15.74854 -15.64069 -15.19094 -15.08597 -14.85737 -14.84821 -14.41858 -14.29452 -13.97555 -13.80814 -13.39623 -13.33945 -13.32322 -13.06869 -13.01932 -12.68301 -12.52144 -12.21617 -12.07758 -11.98309 -11.87603 -11.78025 -11.17963 -11.17362 -11.05270 -10.64722 -10.55156 -10.04951 -9.79076 -9.61449 -9.00598 -8.51856 -6.23021 0.95208 1.31014 1.40015 1.43279 1.48244 1.53765 2.01676 2.22971 2.24846 2.59801 2.68266 2.86341 2.90814 3.43339 3.53455 3.66027 3.72054 3.76642 3.79751 3.87180 4.08234 4.12460 4.19149 4.21551 4.24446 4.44591 4.44708 4.53016 4.55665 4.73894 4.77541 4.85417 4.93799 5.02511 5.05566 5.10469 5.12322 5.29887 5.40522 5.61424 5.70388 5.75976 5.88933 6.11239 6.29698 6.37423 6.93191 7.10352 7.18040 8.60443 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.031926 B = 0.001811 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.819227 B =15455.643406 C =15614.014063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.046 3.954 3 Si 0.914 3.086 4 H -0.261 1.261 5 H -0.259 1.259 6 H -0.238 1.238 7 C -0.530 4.530 8 H 0.063 0.937 9 S -0.174 6.174 10 C -0.110 4.110 11 C 0.541 3.459 12 O -0.560 6.560 13 N -0.680 5.680 14 C 0.098 3.902 15 H 0.110 0.890 16 C -0.158 4.158 17 H 0.140 0.860 18 C 0.065 3.935 19 N -0.497 5.497 20 C 0.057 3.943 21 H 0.070 0.930 22 C -0.111 4.111 23 C -0.134 4.134 24 C 0.102 3.898 25 N -0.710 5.710 26 C 0.520 3.480 27 O -0.591 6.591 28 C 0.075 3.925 29 C -0.161 4.161 30 H 0.130 0.870 31 H 0.277 0.723 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.420 0.580 35 H 0.048 0.952 36 H 0.115 0.885 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.115 0.885 41 H 0.101 0.899 42 H 0.081 0.919 43 H 0.404 0.596 44 H 0.030 0.970 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.110 -20.612 -4.806 38.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.160 4.160 3 Si 0.736 3.264 4 H -0.186 1.186 5 H -0.183 1.183 6 H -0.162 1.162 7 C -0.677 4.677 8 H 0.082 0.918 9 S 0.052 5.948 10 C -0.261 4.261 11 C 0.328 3.672 12 O -0.437 6.437 13 N -0.331 5.331 14 C -0.009 4.009 15 H 0.128 0.872 16 C -0.178 4.178 17 H 0.158 0.842 18 C -0.062 4.062 19 N -0.222 5.222 20 C -0.054 4.054 21 H 0.088 0.912 22 C -0.149 4.149 23 C -0.172 4.172 24 C -0.020 4.020 25 N -0.361 5.361 26 C 0.307 3.693 27 O -0.472 6.472 28 C -0.053 4.053 29 C -0.181 4.181 30 H 0.148 0.852 31 H 0.086 0.914 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.258 0.742 35 H 0.067 0.933 36 H 0.133 0.867 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.088 0.912 40 H 0.134 0.866 41 H 0.119 0.881 42 H 0.100 0.900 43 H 0.240 0.760 44 H 0.048 0.952 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 32.806 -19.478 -4.584 38.427 hybrid contribution -1.433 0.099 0.804 1.646 sum 31.373 -19.379 -3.780 37.069 Atomic orbital electron populations 1.70010 1.07271 1.29028 1.49071 1.25555 0.95278 1.02240 0.92889 0.85871 0.80638 0.79636 0.80259 1.18571 1.18346 1.16180 1.22458 0.90176 0.96757 1.58324 0.91842 1.84725 1.06522 1.05932 1.97604 1.23251 0.95181 0.99867 1.07792 1.19994 0.89596 0.82916 0.74721 1.90687 1.59343 1.43713 1.49995 1.44947 1.06501 1.07255 1.74439 1.22238 0.81818 0.93472 1.03402 0.87182 1.24679 0.97360 1.02233 0.93522 0.84220 1.22733 0.90655 0.96918 0.95927 1.65573 1.00375 1.52752 1.03545 1.21832 0.90032 0.98372 0.95186 0.91197 1.21737 0.94762 1.03625 0.94737 1.21933 0.95131 0.99470 1.00701 1.21719 0.94334 1.00590 0.85402 1.45503 1.18110 1.56718 1.15802 1.20194 0.81442 0.78217 0.89473 1.90716 1.59175 1.61986 1.35316 1.22622 0.89800 0.99323 0.93554 1.23993 0.98032 0.98811 0.97302 0.85175 0.91354 0.86371 0.86627 0.74242 0.93334 0.86679 0.89902 0.89257 0.91177 0.86622 0.88059 0.90049 0.76049 0.95174 0.89096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.88 13.97 21.65 0.30 -55.57 16 2 C 0.05 2.70 5.50 84.86 0.47 3.17 16 3 Si 0.91 45.18 27.74 68.60 1.90 47.08 16 4 H -0.26 -12.55 7.11 99.48 0.71 -11.84 16 5 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 6 H -0.24 -11.78 6.74 99.48 0.67 -11.10 16 7 C -0.53 -30.89 10.04 67.95 0.68 -30.21 16 8 H 0.06 3.89 8.03 -2.91 -0.02 3.87 16 9 S -0.17 -8.84 18.55 -56.49 -1.05 -9.89 16 10 C -0.11 -4.13 6.16 71.24 0.44 -3.69 16 11 C 0.54 18.86 7.85 87.66 0.69 19.55 16 12 O -0.56 -24.28 15.43 -3.04 -0.05 -24.33 16 13 N -0.68 -16.83 5.60 -435.88 -2.44 -19.28 16 14 C 0.10 2.30 6.15 46.40 0.29 2.59 16 15 H 0.11 3.18 7.40 -2.39 -0.02 3.16 16 16 C -0.16 -2.73 7.26 -8.49 -0.06 -2.79 16 17 H 0.14 1.98 8.14 -2.39 -0.02 1.96 16 18 C 0.06 0.98 5.41 86.45 0.47 1.45 16 19 N -0.50 -8.88 5.19 -861.56 -4.47 -13.35 16 20 C 0.06 0.86 1.99 44.03 0.09 0.95 16 21 H 0.07 1.13 7.97 -2.38 -0.02 1.11 16 22 C -0.11 -0.81 5.01 30.73 0.15 -0.66 16 23 C -0.13 -0.37 6.02 30.68 0.18 -0.19 16 24 C 0.10 0.30 7.17 86.49 0.62 0.92 16 25 N -0.71 -7.59 5.45 -467.30 -2.55 -10.14 16 26 C 0.52 9.57 7.44 87.72 0.65 10.22 16 27 O -0.59 -16.04 14.29 -3.01 -0.04 -16.08 16 28 C 0.07 1.68 4.82 86.45 0.42 2.09 16 29 C -0.16 -3.20 6.91 -9.90 -0.07 -3.26 16 30 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.28 15.62 8.31 -92.71 -0.77 14.85 16 32 H 0.12 4.00 8.14 -2.40 -0.02 3.98 16 33 H 0.12 3.98 8.14 -2.40 -0.02 3.96 16 34 H 0.42 7.53 8.83 -92.71 -0.82 6.71 16 35 H 0.05 0.78 7.90 -2.38 -0.02 0.76 16 36 H 0.12 1.23 7.96 -2.39 -0.02 1.21 16 37 H 0.08 0.65 8.13 -2.39 -0.02 0.63 16 38 H 0.09 0.49 7.65 -2.39 -0.02 0.47 16 39 H 0.07 0.28 8.12 -2.39 -0.02 0.26 16 40 H 0.12 -0.20 8.14 -2.39 -0.02 -0.22 16 41 H 0.10 -0.11 8.14 -2.39 -0.02 -0.13 16 42 H 0.08 0.09 8.14 -2.39 -0.02 0.07 16 43 H 0.40 3.84 8.80 -92.71 -0.82 3.02 16 44 H 0.03 0.77 7.96 -2.39 -0.02 0.75 16 45 H 0.09 2.40 6.37 -2.39 -0.02 2.39 16 Total: -1.00 -80.55 375.31 -4.02 -84.57 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -0.65 Total: 16.84 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: 5.02 Total: 0.14 kcal Atomic # 7 Polarization: -89.18 SS G_CDS: -9.16 Total: -98.34 kcal Atomic # 8 Polarization: -40.32 SS G_CDS: -0.09 Total: -40.41 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.90 Total: 47.08 kcal Atomic # 16 Polarization: -8.84 SS G_CDS: -1.05 Total: -9.89 kcal Total: -80.55 -4.02 -84.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113897472.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.537 kcal (2) G-P(sol) polarization free energy of solvation -80.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds