Wall clock time and date at job start Sat Apr 11 2020 05:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86800 * 120.00110 * 2 1 4 4 H 1.48503 * 109.47372 * 270.00389 * 3 2 1 5 5 H 1.48505 * 109.46785 * 29.99802 * 3 2 1 6 6 H 1.48494 * 109.47572 * 149.99691 * 3 2 1 7 7 C 1.38956 * 120.00299 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00014 * 0.02562 * 7 2 1 9 9 N 1.37099 * 120.00089 * 180.02562 * 7 2 1 10 10 C 1.34776 * 120.00155 * 180.02562 * 9 7 2 11 11 O 1.21296 * 119.99632 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00118 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.46987 * 179.97438 * 12 10 9 14 14 C 1.46899 * 110.99921 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.47150 * 180.02562 * 14 13 12 16 16 N 1.46506 * 109.47492 * 180.02562 * 15 14 13 17 17 C 1.34772 * 120.00455 * 179.97438 * 16 15 14 18 18 O 1.21282 * 119.99648 * 0.02562 * 17 16 15 19 19 C 1.50704 * 120.00049 * 179.97438 * 17 16 15 20 20 N 1.46500 * 109.46842 * 180.02562 * 19 17 16 21 21 C 1.34587 * 125.74442 * 125.00490 * 20 19 17 22 22 N 1.30874 * 107.62148 * 179.97438 * 21 20 19 23 23 C 1.34549 * 107.26746 * 359.97438 * 22 21 20 24 24 C 1.47873 * 126.04221 * 180.02562 * 23 22 21 25 25 N 1.34777 * 119.99972 * 359.97438 * 24 23 22 26 26 O 1.21550 * 119.99939 * 179.97438 * 24 23 22 27 27 N 1.28845 * 125.74934 * 305.00314 * 20 19 17 28 28 H 0.96997 * 120.00287 * 0.02562 * 1 2 3 29 29 H 0.97004 * 119.99716 * 0.02562 * 9 7 2 30 30 H 1.09002 * 109.47189 * 59.99783 * 12 10 9 31 31 H 1.08995 * 109.47113 * 299.99939 * 12 10 9 32 32 H 1.00904 * 111.00306 * 303.95593 * 13 12 10 33 33 H 1.09005 * 109.46908 * 60.00618 * 14 13 12 34 34 H 1.09002 * 109.47645 * 300.00423 * 14 13 12 35 35 H 1.08999 * 109.47390 * 60.00560 * 15 14 13 36 36 H 1.09003 * 109.47151 * 300.00130 * 15 14 13 37 37 H 0.97004 * 119.99413 * 0.02562 * 16 15 14 38 38 H 1.08999 * 109.46561 * 60.00507 * 19 17 16 39 39 H 1.08995 * 109.47021 * 300.00806 * 19 17 16 40 40 H 1.07996 * 126.19000 * 0.26455 * 21 20 19 41 41 H 0.96990 * 120.00613 * 359.97438 * 25 24 23 42 42 H 0.97000 * 119.99577 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4454 2.6526 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 1.4689 -2.1387 0.0005 9 7 3.3799 -1.2033 0.0011 10 6 4.0538 -2.3705 0.0011 11 8 3.4474 -3.4209 0.0011 12 6 5.5608 -2.3704 0.0022 13 7 6.0505 -3.7553 0.0026 14 6 7.5190 -3.7945 0.0031 15 6 7.9903 -5.2500 0.0029 16 7 9.4549 -5.2891 0.0040 17 6 10.0974 -6.4738 0.0045 18 8 9.4632 -7.5076 0.0036 19 6 11.6039 -6.5140 0.0051 20 7 12.0552 -7.9077 0.0050 21 6 12.8939 -8.4625 -0.8895 22 7 13.0552 -9.7177 -0.5560 23 6 12.3151 -9.9363 0.5462 24 6 12.1957 -11.2181 1.2738 25 7 12.8663 -12.3039 0.8407 26 8 11.4927 -11.2923 2.2627 27 7 11.7161 -8.8089 0.8612 28 1 -0.4850 0.8400 -0.0004 29 1 3.8648 -0.3632 0.0014 30 1 5.9235 -1.8569 0.8927 31 1 5.9248 -1.8562 -0.8872 32 1 5.6744 -4.2717 0.7837 33 1 7.8955 -3.2904 0.8933 34 1 7.8963 -3.2906 -0.8867 35 1 7.6139 -5.7537 -0.8874 36 1 7.6131 -5.7543 0.8926 37 1 9.9621 -4.4623 0.0052 38 1 11.9804 -6.0099 0.8952 39 1 11.9811 -6.0101 -0.8847 40 1 13.3546 -7.9612 -1.7279 41 1 13.4270 -12.2448 0.0514 42 1 12.7882 -13.1446 1.3183 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001127648403.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:01 Heat of formation + Delta-G solvation = 3.292465 kcal Electronic energy + Delta-G solvation = -27089.079384 eV Core-core repulsion = 22721.064778 eV Total energy + Delta-G solvation = -4368.014606 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.93702 -40.20405 -39.44107 -38.56669 -36.59729 -35.06618 -34.63130 -33.95099 -33.86593 -32.26920 -31.71419 -30.30749 -28.61439 -26.22677 -24.89283 -23.80899 -22.96273 -22.29685 -21.30588 -20.87847 -19.46275 -18.74075 -18.47796 -18.12978 -17.66566 -16.91227 -16.69069 -16.32535 -16.04698 -15.99356 -15.69234 -15.41378 -15.01126 -14.80569 -14.45091 -14.29520 -14.23423 -13.85943 -13.55231 -13.38481 -13.10309 -12.62838 -12.41879 -12.35278 -11.96052 -11.68607 -11.63674 -11.19708 -11.06868 -10.92852 -10.75374 -10.63881 -10.55765 -10.12509 -10.01253 -9.93216 -9.61735 -9.55844 -8.69286 -8.31633 -8.21888 -6.34472 -3.86316 0.97658 1.46861 1.62153 1.98756 2.48693 2.89719 2.97952 3.02908 3.03378 3.11544 3.64530 3.67989 3.76875 3.91950 4.06147 4.14447 4.19200 4.25515 4.53778 4.66041 4.71349 4.92265 5.16793 5.20144 5.48012 5.48484 5.62526 5.67807 5.71939 5.78110 5.83598 5.87796 5.93510 6.32723 6.82291 6.84237 6.92501 7.38694 7.53526 7.53706 7.62388 7.84931 8.10497 8.55352 8.91161 9.38082 9.77554 10.78592 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.031865 B = 0.001408 C = 0.001365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.500781 B =19884.557139 C =20503.349634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.042 3.958 3 Si 0.881 3.119 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.270 1.270 7 C -0.307 4.307 8 H 0.120 0.880 9 N -0.589 5.589 10 C 0.448 3.552 11 O -0.563 6.563 12 C 0.050 3.950 13 N -0.666 5.666 14 C 0.050 3.950 15 C 0.120 3.880 16 N -0.722 5.722 17 C 0.498 3.502 18 O -0.502 6.502 19 C 0.101 3.899 20 N -0.291 5.291 21 C 0.196 3.804 22 N -0.484 5.484 23 C 0.132 3.868 24 C 0.623 3.377 25 N -0.834 5.834 26 O -0.517 6.517 27 N -0.217 5.217 28 H 0.274 0.726 29 H 0.370 0.630 30 H 0.046 0.954 31 H 0.089 0.911 32 H 0.355 0.645 33 H 0.034 0.966 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.402 0.598 38 H 0.131 0.869 39 H 0.142 0.858 40 H 0.229 0.771 41 H 0.411 0.589 42 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.139 -9.859 -2.704 36.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.161 4.161 3 Si 0.707 3.293 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.435 4.435 8 H 0.138 0.862 9 N -0.229 5.229 10 C 0.233 3.767 11 O -0.445 6.445 12 C -0.082 4.082 13 N -0.299 5.299 14 C -0.080 4.080 15 C -0.003 4.003 16 N -0.376 5.376 17 C 0.280 3.720 18 O -0.375 6.375 19 C -0.024 4.024 20 N -0.087 5.087 21 C -0.099 4.099 22 N -0.210 5.210 23 C -0.148 4.148 24 C 0.403 3.597 25 N -0.399 5.399 26 O -0.389 6.389 27 N -0.056 5.056 28 H 0.084 0.916 29 H 0.203 0.797 30 H 0.064 0.936 31 H 0.107 0.893 32 H 0.175 0.825 33 H 0.052 0.948 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.236 0.764 38 H 0.148 0.852 39 H 0.160 0.840 40 H 0.245 0.755 41 H 0.240 0.760 42 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 33.220 -11.364 -2.351 35.189 hybrid contribution 1.299 2.284 0.362 2.653 sum 34.520 -9.080 -1.989 35.749 Atomic orbital electron populations 1.69617 1.05662 1.27545 1.49135 1.25043 0.95489 0.97980 0.97593 0.86661 0.79705 0.84039 0.78878 1.19588 1.20161 1.19582 1.19445 0.79203 0.96694 1.48208 0.86243 1.42192 1.07560 1.06100 1.67001 1.19660 0.88102 0.84639 0.84284 1.90586 1.69351 1.30907 1.53636 1.21697 0.95310 0.89821 1.01408 1.59906 1.04854 1.13267 1.51920 1.22069 0.89782 0.95051 1.01086 1.21350 0.77680 0.97344 1.03943 1.45739 1.08233 1.07822 1.75815 1.20201 0.89110 0.84544 0.78164 1.90896 1.67377 1.32514 1.46673 1.21888 0.94666 0.77809 1.08029 1.46900 1.32371 1.09982 1.19426 1.26516 0.95513 0.90165 0.97734 1.71212 1.23035 1.14041 1.12667 1.23620 0.99802 0.95215 0.96139 1.16237 0.79495 0.81336 0.82589 1.43417 1.50584 1.12125 1.33812 1.90908 1.38659 1.84018 1.25286 1.74454 1.18299 0.98051 1.14783 0.91561 0.79694 0.93560 0.89315 0.82480 0.94761 0.90353 0.89845 0.90914 0.76381 0.85156 0.84014 0.75471 0.75952 0.75695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.49 13.96 55.50 0.77 -24.72 16 2 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 3 Si 0.88 18.92 27.74 -169.99 -4.71 14.20 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.23 6.52 56.52 0.37 -4.86 16 7 C -0.31 -8.59 10.16 -14.93 -0.15 -8.74 16 8 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 9 N -0.59 -13.69 5.09 -10.96 -0.06 -13.74 16 10 C 0.45 9.87 7.82 -10.99 -0.09 9.78 16 11 O -0.56 -14.97 15.78 5.54 0.09 -14.89 16 12 C 0.05 0.76 6.17 -4.98 -0.03 0.73 16 13 N -0.67 -9.37 6.12 -115.06 -0.70 -10.07 16 14 C 0.05 0.45 5.80 -3.83 -0.02 0.43 16 15 C 0.12 1.12 5.94 -4.04 -0.02 1.09 16 16 N -0.72 -4.27 5.56 -60.29 -0.33 -4.60 16 17 C 0.50 4.00 7.84 -10.99 -0.09 3.91 16 18 O -0.50 -7.17 15.67 5.56 0.09 -7.08 16 19 C 0.10 0.33 6.93 -5.19 -0.04 0.29 16 20 N -0.29 -2.20 3.18 -63.76 -0.20 -2.40 16 21 C 0.20 1.11 12.57 -90.48 -1.14 -0.03 16 22 N -0.48 -4.21 11.09 -12.36 -0.14 -4.34 16 23 C 0.13 1.52 7.96 -156.36 -1.24 0.28 16 24 C 0.62 7.22 8.10 -12.32 -0.10 7.12 16 25 N -0.83 -5.40 8.87 30.54 0.27 -5.13 16 26 O -0.52 -8.10 17.92 5.32 0.10 -8.00 16 27 N -0.22 -2.69 11.04 32.07 0.35 -2.33 16 28 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.37 7.44 5.76 -40.82 -0.24 7.21 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.36 5.33 8.43 -39.29 -0.33 5.00 16 33 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.40 0.75 8.47 -40.82 -0.35 0.41 16 38 H 0.13 0.11 8.14 -51.93 -0.42 -0.32 16 39 H 0.14 -0.28 8.06 -51.93 -0.42 -0.70 16 40 H 0.23 -0.02 8.06 -52.49 -0.42 -0.44 16 41 H 0.41 1.83 8.54 -40.82 -0.35 1.48 16 42 H 0.41 1.84 8.93 -40.82 -0.36 1.47 16 LS Contribution 376.48 15.07 5.67 5.67 Total: -1.00 -44.04 376.48 -6.80 -50.85 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -4.98 Total: 10.67 kcal Atomic # 6 Polarization: 18.93 SS G_CDS: -3.01 Total: 15.91 kcal Atomic # 7 Polarization: -67.30 SS G_CDS: -0.04 Total: -67.34 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: 0.27 Total: -29.97 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -4.71 Total: 14.20 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -44.04 -6.80 -50.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127648403.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.140 kcal (2) G-P(sol) polarization free energy of solvation -44.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds