Wall clock time and date at job start Sat Apr 11 2020 05:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86800 * 120.00110 * 2 1 4 4 H 1.48503 * 109.47372 * 270.00389 * 3 2 1 5 5 H 1.48505 * 109.46785 * 29.99802 * 3 2 1 6 6 H 1.48494 * 109.47572 * 149.99691 * 3 2 1 7 7 C 1.38956 * 120.00299 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00014 * 0.02562 * 7 2 1 9 9 N 1.37099 * 120.00089 * 180.02562 * 7 2 1 10 10 C 1.34776 * 120.00155 * 180.02562 * 9 7 2 11 11 O 1.21296 * 119.99632 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00118 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.46987 * 179.97438 * 12 10 9 14 14 C 1.46899 * 110.99921 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.47150 * 180.02562 * 14 13 12 16 16 N 1.46506 * 109.47492 * 180.02562 * 15 14 13 17 17 C 1.34772 * 120.00455 * 179.97438 * 16 15 14 18 18 O 1.21282 * 119.99648 * 0.02562 * 17 16 15 19 19 C 1.50704 * 120.00049 * 179.97438 * 17 16 15 20 20 N 1.46500 * 109.46842 * 180.02562 * 19 17 16 21 21 C 1.34587 * 125.74442 * 125.00490 * 20 19 17 22 22 N 1.30874 * 107.62148 * 179.97438 * 21 20 19 23 23 C 1.34549 * 107.26746 * 359.97438 * 22 21 20 24 24 C 1.47873 * 126.04221 * 180.02562 * 23 22 21 25 25 N 1.34777 * 119.99972 * 359.97438 * 24 23 22 26 26 O 1.21550 * 119.99939 * 179.97438 * 24 23 22 27 27 N 1.28845 * 125.74934 * 305.00314 * 20 19 17 28 28 H 0.96997 * 120.00287 * 0.02562 * 1 2 3 29 29 H 0.97004 * 119.99716 * 0.02562 * 9 7 2 30 30 H 1.09002 * 109.47189 * 59.99783 * 12 10 9 31 31 H 1.08995 * 109.47113 * 299.99939 * 12 10 9 32 32 H 1.00904 * 111.00306 * 303.95593 * 13 12 10 33 33 H 1.09005 * 109.46908 * 60.00618 * 14 13 12 34 34 H 1.09002 * 109.47645 * 300.00423 * 14 13 12 35 35 H 1.08999 * 109.47390 * 60.00560 * 15 14 13 36 36 H 1.09003 * 109.47151 * 300.00130 * 15 14 13 37 37 H 0.97004 * 119.99413 * 0.02562 * 16 15 14 38 38 H 1.08999 * 109.46561 * 60.00507 * 19 17 16 39 39 H 1.08995 * 109.47021 * 300.00806 * 19 17 16 40 40 H 1.07996 * 126.19000 * 0.26455 * 21 20 19 41 41 H 0.96990 * 120.00613 * 359.97438 * 25 24 23 42 42 H 0.97000 * 119.99577 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4454 2.6526 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 1.4689 -2.1387 0.0005 9 7 3.3799 -1.2033 0.0011 10 6 4.0538 -2.3705 0.0011 11 8 3.4474 -3.4209 0.0011 12 6 5.5608 -2.3704 0.0022 13 7 6.0505 -3.7553 0.0026 14 6 7.5190 -3.7945 0.0031 15 6 7.9903 -5.2500 0.0029 16 7 9.4549 -5.2891 0.0040 17 6 10.0974 -6.4738 0.0045 18 8 9.4632 -7.5076 0.0036 19 6 11.6039 -6.5140 0.0051 20 7 12.0552 -7.9077 0.0050 21 6 12.8939 -8.4625 -0.8895 22 7 13.0552 -9.7177 -0.5560 23 6 12.3151 -9.9363 0.5462 24 6 12.1957 -11.2181 1.2738 25 7 12.8663 -12.3039 0.8407 26 8 11.4927 -11.2923 2.2627 27 7 11.7161 -8.8089 0.8612 28 1 -0.4850 0.8400 -0.0004 29 1 3.8648 -0.3632 0.0014 30 1 5.9235 -1.8569 0.8927 31 1 5.9248 -1.8562 -0.8872 32 1 5.6744 -4.2717 0.7837 33 1 7.8955 -3.2904 0.8933 34 1 7.8963 -3.2906 -0.8867 35 1 7.6139 -5.7537 -0.8874 36 1 7.6131 -5.7543 0.8926 37 1 9.9621 -4.4623 0.0052 38 1 11.9804 -6.0099 0.8952 39 1 11.9811 -6.0101 -0.8847 40 1 13.3546 -7.9612 -1.7279 41 1 13.4270 -12.2448 0.0514 42 1 12.7882 -13.1446 1.3183 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001127648403.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:00 Heat of formation + Delta-G solvation = -40.546741 kcal Electronic energy + Delta-G solvation = -27090.980394 eV Core-core repulsion = 22721.064778 eV Total energy + Delta-G solvation = -4369.915617 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.49604 -40.87102 -40.32517 -40.25790 -37.55803 -36.06100 -35.65299 -35.31280 -34.62535 -33.75431 -32.86634 -31.13675 -29.36241 -27.61466 -25.78202 -25.15983 -23.55582 -23.03783 -21.96951 -21.51829 -21.29963 -20.30122 -19.33386 -18.77763 -18.26725 -17.78824 -17.56752 -17.32860 -17.12302 -16.85014 -16.57545 -16.48877 -15.97618 -15.72980 -15.58550 -15.33203 -15.11069 -14.89510 -14.84872 -14.50317 -14.28536 -13.97240 -13.69157 -13.39295 -12.98521 -12.94073 -12.60240 -12.40754 -12.39418 -11.97064 -11.69887 -11.64269 -11.54124 -11.51122 -11.23402 -10.87834 -10.53013 -10.45936 -10.25338 -10.22919 -9.37912 -8.41160 -6.02985 0.29239 1.00110 1.18280 1.30662 1.37342 1.44165 1.46326 1.92146 1.96124 2.22681 2.24220 2.32565 2.79535 3.15120 3.18151 3.36408 3.55959 3.71515 3.87555 3.92559 4.09492 4.11316 4.16522 4.19603 4.45822 4.47637 4.60103 4.82511 4.89968 4.93942 5.24945 5.26336 5.52334 5.55223 5.73247 5.88010 6.01325 6.19725 6.28418 6.42833 6.59545 6.88125 6.96560 7.14711 7.16707 7.39549 7.97183 8.76714 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.031865 B = 0.001408 C = 0.001365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.500781 B =19884.557139 C =20503.349634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.016 4.016 3 Si 0.969 3.031 4 H -0.256 1.256 5 H -0.277 1.277 6 H -0.227 1.227 7 C -0.333 4.333 8 H 0.051 0.949 9 N -0.589 5.589 10 C 0.443 3.557 11 O -0.619 6.619 12 C 0.067 3.933 13 N -0.694 5.694 14 C 0.061 3.939 15 C 0.127 3.873 16 N -0.700 5.700 17 C 0.491 3.509 18 O -0.576 6.576 19 C 0.102 3.898 20 N -0.294 5.294 21 C 0.215 3.785 22 N -0.500 5.500 23 C 0.108 3.892 24 C 0.615 3.385 25 N -0.806 5.806 26 O -0.574 6.574 27 N -0.269 5.269 28 H 0.279 0.721 29 H 0.392 0.608 30 H 0.084 0.916 31 H 0.123 0.877 32 H 0.344 0.656 33 H 0.062 0.938 34 H 0.104 0.896 35 H 0.055 0.945 36 H 0.046 0.954 37 H 0.427 0.573 38 H 0.161 0.839 39 H 0.208 0.792 40 H 0.289 0.711 41 H 0.423 0.577 42 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 40.404 -6.086 -4.114 41.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.215 4.215 3 Si 0.789 3.211 4 H -0.180 1.180 5 H -0.202 1.202 6 H -0.150 1.150 7 C -0.462 4.462 8 H 0.069 0.931 9 N -0.231 5.231 10 C 0.232 3.768 11 O -0.504 6.504 12 C -0.065 4.065 13 N -0.327 5.327 14 C -0.068 4.068 15 C 0.002 3.998 16 N -0.355 5.355 17 C 0.276 3.724 18 O -0.454 6.454 19 C -0.020 4.020 20 N -0.089 5.089 21 C -0.080 4.080 22 N -0.226 5.226 23 C -0.171 4.171 24 C 0.396 3.604 25 N -0.371 5.371 26 O -0.450 6.450 27 N -0.108 5.108 28 H 0.089 0.911 29 H 0.227 0.773 30 H 0.102 0.898 31 H 0.141 0.859 32 H 0.162 0.838 33 H 0.080 0.920 34 H 0.122 0.878 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.266 0.734 38 H 0.179 0.821 39 H 0.224 0.776 40 H 0.304 0.696 41 H 0.255 0.745 42 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 38.593 -7.555 -3.799 39.508 hybrid contribution -0.357 1.009 0.718 1.288 sum 38.236 -6.546 -3.081 38.915 Atomic orbital electron populations 1.69813 1.08337 1.29326 1.50178 1.26185 0.96480 1.02933 0.95885 0.85312 0.79537 0.76283 0.80009 1.18022 1.20221 1.14990 1.19011 0.81703 0.94870 1.50628 0.93066 1.41999 1.05685 1.07667 1.67705 1.21135 0.91343 0.83237 0.81128 1.90566 1.71572 1.33024 1.55225 1.21621 0.89077 0.91166 1.04650 1.59884 1.08142 1.12727 1.51971 1.22087 0.86543 0.94676 1.03513 1.21034 0.79846 0.97502 1.01433 1.45479 1.06802 1.08712 1.74544 1.21140 0.91278 0.83671 0.76306 1.90883 1.69367 1.35079 1.50068 1.22431 0.90576 0.76372 1.12629 1.47197 1.32263 1.10684 1.18799 1.27678 0.93556 0.89194 0.97530 1.71180 1.23336 1.16070 1.11982 1.23613 1.00989 0.95112 0.97432 1.16565 0.79219 0.82521 0.82113 1.43232 1.48965 1.11346 1.33605 1.90860 1.41354 1.85042 1.27776 1.74355 1.19794 0.99353 1.17334 0.91139 0.77257 0.89840 0.85941 0.83787 0.91953 0.87809 0.92618 0.93580 0.73419 0.82148 0.77561 0.69610 0.74485 0.74519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.37 13.96 21.66 0.30 -56.07 16 2 C -0.02 -0.90 5.50 84.93 0.47 -0.43 16 3 Si 0.97 37.55 27.74 68.60 1.90 39.45 16 4 H -0.26 -9.34 7.11 99.48 0.71 -8.64 16 5 H -0.28 -10.75 7.11 99.48 0.71 -10.04 16 6 H -0.23 -7.15 6.52 99.48 0.65 -6.50 16 7 C -0.33 -19.43 10.16 84.04 0.85 -18.57 16 8 H 0.05 3.60 7.39 -2.91 -0.02 3.58 16 9 N -0.59 -26.95 5.09 -306.98 -1.56 -28.52 16 10 C 0.44 19.42 7.82 87.66 0.69 20.11 16 11 O -0.62 -34.46 15.78 -3.08 -0.05 -34.51 16 12 C 0.07 1.79 6.17 85.56 0.53 2.32 16 13 N -0.69 -18.30 6.12 -517.95 -3.17 -21.48 16 14 C 0.06 0.88 5.80 86.30 0.50 1.38 16 15 C 0.13 2.24 5.94 86.38 0.51 2.75 16 16 N -0.70 -6.31 5.56 -463.05 -2.57 -8.88 16 17 C 0.49 7.00 7.84 87.66 0.69 7.69 16 18 O -0.58 -17.00 15.67 -3.04 -0.05 -17.05 16 19 C 0.10 0.23 6.93 85.63 0.59 0.82 16 20 N -0.29 -3.73 3.18 -355.65 -1.13 -4.86 16 21 C 0.21 1.67 12.57 180.30 2.27 3.93 16 22 N -0.50 -7.93 11.09 -193.03 -2.14 -10.07 16 23 C 0.11 2.54 7.96 137.13 1.09 3.63 16 24 C 0.61 15.14 8.10 86.79 0.70 15.84 16 25 N -0.81 -10.66 8.87 -175.58 -1.56 -12.22 16 26 O -0.57 -19.51 17.92 -3.87 -0.07 -19.58 16 27 N -0.27 -6.70 11.04 -52.44 -0.58 -7.28 16 28 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 29 H 0.39 14.37 5.76 -92.70 -0.53 13.84 16 30 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.34 10.34 8.43 -89.69 -0.76 9.59 16 33 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 34 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.43 -0.52 8.47 -92.71 -0.79 -1.30 16 38 H 0.16 -0.53 8.14 -2.39 -0.02 -0.55 16 39 H 0.21 -2.30 8.06 -2.39 -0.02 -2.32 16 40 H 0.29 -1.87 8.06 -2.91 -0.02 -1.89 16 41 H 0.42 3.56 8.54 -92.72 -0.79 2.77 16 42 H 0.42 3.86 8.93 -92.71 -0.83 3.03 16 Total: -1.00 -112.94 376.48 -4.39 -117.33 By element: Atomic # 1 Polarization: 26.85 SS G_CDS: -2.60 Total: 24.24 kcal Atomic # 6 Polarization: 30.59 SS G_CDS: 8.89 Total: 39.48 kcal Atomic # 7 Polarization: -136.95 SS G_CDS: -12.41 Total: -149.36 kcal Atomic # 8 Polarization: -70.98 SS G_CDS: -0.17 Total: -71.14 kcal Atomic # 14 Polarization: 37.55 SS G_CDS: 1.90 Total: 39.45 kcal Total: -112.94 -4.39 -117.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127648403.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.787 kcal (2) G-P(sol) polarization free energy of solvation -112.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -117.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds